Rh3BG340300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0023114
Physical Location & Seq
Forward (+)
36534105 .. 36534533
429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG340300.1

Sequence Viewer

Length: 429 bp
ATGGGCCACTCCACCCAAAACGACGCCGCACTCGTTTCCAACCTCGGCATCGGACCCCACTCCACCCAAAACGAGATCGAGACTCCGCGCTGGCAACATCAACGTTCTTCTGCAACTCGACTCTCTCCAAACGCCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATTATCCTTCTCAACTCGACGCCTCCAATTCTGATCCACAAGACCCAGCCTCGATTCCGGACCCGAAGAAGATTTTGGTGACCGGCAACAGAGGAAGAGGATCCACATCGCCGGAAGATGATTTTGGTGATCGGATGCCGATGCTCGAGAACTCTGTCCCCGATTCGTCGTCAGGGTCAACGTTGGAGCTCTACCCAGGACCTCCGGCGCTCGACCCAGCTCTCCGGCGCTCGACTCATGCCAATGGTAGAGGAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

15.15

Weight (kDa)

5.25

Isoelectric Point (pI)

52.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0023114)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0005500.1_g000007
rosa_samantha Rh3BG340300 Rh5CG315500 Rh7AG304000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 88
AccIII TCCGGA 1 cut(s) 226
AciI CCGC 2 cut(s) 27, 86
AclI AACGTT 2 cut(s) 103, 350
AclWI GGATC 3 cut(s) 197, 264, 277
AcyI GRCGYC 2 cut(s) 24, 189
AjnI CCWGG 1 cut(s) 364
AjuI GAANNNNNNNTTGG 4 cut(s) 227, 259, 276, 308
AluBI AGCT 2 cut(s) 358, 389
AluI AGCT 2 cut(s) 358, 389
Alw21I GWGCWC 1 cut(s) 360
Alw26I GTCTC 1 cut(s) 74
AlwI GGATC 3 cut(s) 197, 264, 277
Ama87I CYCGRG 1 cut(s) 314
Aor13HI TCCGGA 1 cut(s) 226
AoxI GGCC 1 cut(s) 4
AspLEI GCGC 3 cut(s) 90, 379, 399
AspS9I GGNCC 4 cut(s) 4, 53, 229, 368
AsuHPI GGTGA 2 cut(s) 259, 308
AvaI CYCGRG 1 cut(s) 314
AvaII GGWCC 3 cut(s) 53, 229, 368
BamHI GGATCC 1 cut(s) 269
BanII GRGCYC 1 cut(s) 360
Bbv12I GWGCWC 1 cut(s) 360
BccI CCATC 1 cut(s) 143
BciT130I CCWGG 1 cut(s) 366
BcoDI GTCTC 1 cut(s) 74
BfoI RGCGCY 2 cut(s) 380, 400
BisI GCNGC 1 cut(s) 27
BlsI GCNGC 1 cut(s) 28
Bme1390I CCNGG 1 cut(s) 366
Bme18I GGWCC 3 cut(s) 53, 229, 368
BmeT110I CYCGRG 1 cut(s) 314
BmgT120I GGNCC 4 cut(s) 4, 53, 229, 368
BmiI GGNNCC 3 cut(s) 55, 231, 271
BmrFI CCNGG 1 cut(s) 366
BmsI GCATC 3 cut(s) 57, 294, 300
BsaBI GATNNNNATC 1 cut(s) 274
BsaHI GRCGYC 2 cut(s) 24, 189
BsaJI CCNNGG 2 cut(s) 43, 364
BsaWI WCCGGW 1 cut(s) 226
Bse118I RCCGGY 1 cut(s) 251
Bse8I GATNNNNATC 1 cut(s) 274
BseAI TCCGGA 1 cut(s) 226
BseBI CCWGG 1 cut(s) 366
BseDI CCNNGG 2 cut(s) 43, 364
BseGI GGATG 1 cut(s) 309
BseJI GATNNNNATC 1 cut(s) 274
BseYI CCCAGC 2 cut(s) 214, 385
Bsh1236I CGCG 1 cut(s) 88
BshFI GGCC 1 cut(s) 6
BsiHKAI GWGCWC 1 cut(s) 360
BsiHKCI CYCGRG 1 cut(s) 314
BsiSI CCGG 5 cut(s) 227, 252, 281, 374, 394
BslFI GGGAC 1 cut(s) 311
BsmAI GTCTC 1 cut(s) 74
BsmFI GGGAC 1 cut(s) 311
BsnI GGCC 1 cut(s) 6
BsoBI CYCGRG 1 cut(s) 314
Bsp1286I GDGCHC 1 cut(s) 360
Bsp13I TCCGGA 1 cut(s) 226
Bsp143I GATC 4 cut(s) 75, 202, 269, 298
BspACI CCGC 2 cut(s) 27, 86
BspANI GGCC 1 cut(s) 6
BspEI TCCGGA 1 cut(s) 226
BspFNI CGCG 1 cut(s) 88
BspLI GGNNCC 3 cut(s) 55, 231, 271
BspPI GGATC 3 cut(s) 197, 264, 277
BsrFI RCCGGY 1 cut(s) 251
BssAI RCCGGY 1 cut(s) 251
BssECI CCNNGG 2 cut(s) 43, 364
BssMI GATC 4 cut(s) 75, 202, 269, 298
BssNI GRCGYC 2 cut(s) 24, 189
Bst2UI CCWGG 1 cut(s) 366
Bst6I CTCTTC 1 cut(s) 259
BstACI GRCGYC 2 cut(s) 24, 189
BstC8I GCNNGC 1 cut(s) 92
BstEII GGTNACC 1 cut(s) 247
BstF5I GGATG 1 cut(s) 309
BstFNI CGCG 1 cut(s) 88
BstH2I RGCGCY 2 cut(s) 380, 400
BstHHI GCGC 3 cut(s) 90, 379, 399
BstKTI GATC 4 cut(s) 78, 205, 272, 301
BstMAI GTCTC 1 cut(s) 74
BstMBI GATC 4 cut(s) 75, 202, 269, 298
BstNI CCWGG 1 cut(s) 366
BstPI GGTNACC 1 cut(s) 247
BstSCI CCNGG 1 cut(s) 364
BstUI CGCG 1 cut(s) 88
BstX2I RGATCY 1 cut(s) 269
BstYI RGATCY 1 cut(s) 269
BsuRI GGCC 1 cut(s) 6
BtgZI GCGATG 1 cut(s) 261
BtsCI GGATG 1 cut(s) 309
Cac8I GCNNGC 1 cut(s) 92
CfoI GCGC 3 cut(s) 90, 379, 399
Cfr10I RCCGGY 1 cut(s) 251
Cfr13I GGNCC 4 cut(s) 4, 53, 229, 368
CseI GACGC 2 cut(s) 32, 197
CviAII CATG 1 cut(s) 407
CviJI RGCY 4 cut(s) 6, 218, 358, 389
CviKI_1 RGCY 4 cut(s) 6, 218, 358, 389
DpnI GATC 4 cut(s) 77, 204, 271, 300
DpnII GATC 4 cut(s) 75, 202, 269, 298
Eam1104I CTCTTC 1 cut(s) 259
EarI CTCTTC 1 cut(s) 259
Ecl136II GAGCTC 1 cut(s) 358
Eco24I GRGCYC 1 cut(s) 360
Eco47I GGWCC 3 cut(s) 53, 229, 368
Eco53kI GAGCTC 1 cut(s) 358
Eco88I CYCGRG 1 cut(s) 314
Eco91I GGTNACC 1 cut(s) 247
EcoICRI GAGCTC 1 cut(s) 358
EcoO109I RGGNCCY 1 cut(s) 368
EcoO65I GGTNACC 1 cut(s) 247
EcoRII CCWGG 1 cut(s) 364
EcoT38I GRGCYC 1 cut(s) 360
FaeI CATG 1 cut(s) 410
FaiI YATR 1 cut(s) 408
FaqI GGGAC 1 cut(s) 311
FatI CATG 1 cut(s) 406
Fnu4HI GCNGC 1 cut(s) 27
FokI GGATG 1 cut(s) 316
FriOI GRGCYC 1 cut(s) 360
Fsp4HI GCNGC 1 cut(s) 27
GlaI GCGC 3 cut(s) 89, 378, 398
GluI GCNGC 1 cut(s) 27
GsaI CCCAGC 2 cut(s) 218, 389
HaeII RGCGCY 2 cut(s) 380, 400
HaeIII GGCC 1 cut(s) 6
HapII CCGG 5 cut(s) 227, 252, 281, 374, 394
HgaI GACGC 2 cut(s) 32, 197
HhaI GCGC 3 cut(s) 90, 379, 399
Hin1I GRCGYC 2 cut(s) 24, 189
Hin1II CATG 1 cut(s) 410
Hin6I GCGC 3 cut(s) 88, 377, 397
HinP1I GCGC 3 cut(s) 88, 377, 397
HincII GTYRAC 1 cut(s) 348
HindII GTYRAC 1 cut(s) 348
HinfI GANTC 5 cut(s) 82, 120, 223, 332, 403
HpaII CCGG 5 cut(s) 227, 252, 281, 374, 394
HphI GGTGA 2 cut(s) 259, 308
Hpy166II GTNNAC 1 cut(s) 348
Hpy188I TCNGA 3 cut(s) 53, 202, 303
Hpy188III TCNNGA 3 cut(s) 79, 227, 316
Hpy8I GTNNAC 1 cut(s) 348
Hpy99I CGWCG 3 cut(s) 26, 191, 340
HpyAV CCTTC 1 cut(s) 186
HpyCH4IV ACGT 2 cut(s) 103, 350
HpyCH4V TGCA 1 cut(s) 113
HpySE526I ACGT 2 cut(s) 103, 350
Hsp92I GRCGYC 2 cut(s) 24, 189
Hsp92II CATG 1 cut(s) 410
HspAI GCGC 3 cut(s) 88, 377, 397
Kpn2I TCCGGA 1 cut(s) 226
Kzo9I GATC 4 cut(s) 75, 202, 269, 298
LmnI GCTCC 1 cut(s) 355
LweI GCATC 3 cut(s) 57, 294, 300
MaeII ACGT 2 cut(s) 103, 350
MaeIII GTNAC 1 cut(s) 247
MalI GATC 4 cut(s) 77, 204, 271, 300
MboI GATC 4 cut(s) 75, 202, 269, 298
MboII GAAGA 5 cut(s) 99, 247, 250, 276, 296
MflI RGATCY 1 cut(s) 269
MhlI GDGCHC 1 cut(s) 360
MluCI AATT 1 cut(s) 196
MlyI GAGTC 3 cut(s) 76, 114, 397
MmeI TCCRAC 2 cut(s) 63, 333
MnlI CCTC 7 cut(s) 53, 202, 229, 254, 260, 381, 413
MroI TCCGGA 1 cut(s) 226
MslI CAYNNNNRTG 1 cut(s) 411
MspI CCGG 5 cut(s) 227, 252, 281, 374, 394
MspR9I CCNGG 1 cut(s) 366
MvaI CCWGG 1 cut(s) 366
MvnI CGCG 1 cut(s) 88
NdeII GATC 4 cut(s) 75, 202, 269, 298
NlaIII CATG 1 cut(s) 410
NlaIV GGNNCC 3 cut(s) 55, 231, 271
NmeAIII GCCGAG 1 cut(s) 24
NmuCI GTSAC 1 cut(s) 247
PaeR7I CTCGAG 1 cut(s) 314
PcsI WCGNNNNNNNCGW 1 cut(s) 30
PfeI GAWTC 2 cut(s) 223, 332
PkrI GCNGC 1 cut(s) 28
PleI GAGTC 3 cut(s) 76, 114, 397
PpsI GAGTC 3 cut(s) 76, 114, 397
PpuMI RGGWCCY 1 cut(s) 368
Psp124BI GAGCTC 1 cut(s) 360
Psp1406I AACGTT 2 cut(s) 103, 350
Psp5II RGGWCCY 1 cut(s) 368
Psp6I CCWGG 1 cut(s) 364
PspEI GGTNACC 1 cut(s) 247
PspFI CCCAGC 2 cut(s) 214, 385
PspGI CCWGG 1 cut(s) 364
PspN4I GGNNCC 3 cut(s) 55, 231, 271
PspPI GGNCC 4 cut(s) 4, 53, 229, 368
PspPPI RGGWCCY 1 cut(s) 368
PsuI RGATCY 1 cut(s) 269
RseI CAYNNNNRTG 1 cut(s) 411
SacI GAGCTC 1 cut(s) 360
SatI GCNGC 1 cut(s) 27
Sau3AI GATC 4 cut(s) 75, 202, 269, 298
Sau96I GGNCC 4 cut(s) 4, 53, 229, 368
SchI GAGTC 3 cut(s) 76, 114, 397
ScrFI CCNGG 1 cut(s) 366
SduI GDGCHC 1 cut(s) 360
SetI ASST 6 cut(s) 45, 106, 353, 360, 373, 391
SfaNI GCATC 3 cut(s) 57, 294, 300
Sfr274I CTCGAG 1 cut(s) 314
SinI GGWCC 3 cut(s) 53, 229, 368
SlaI CTCGAG 1 cut(s) 314
SmiMI CAYNNNNRTG 1 cut(s) 411
SmlI CTYRAG 1 cut(s) 314
SmoI CTYRAG 1 cut(s) 314
Sse9I AATT 1 cut(s) 196
SsiI CCGC 2 cut(s) 27, 86
SstI GAGCTC 1 cut(s) 360
StyD4I CCNGG 1 cut(s) 364
TaiI ACGT 2 cut(s) 106, 353
TaqI TCGA 7 cut(s) 78, 118, 186, 221, 315, 381, 401
TasI AATT 1 cut(s) 196
TauI GCSGC 1 cut(s) 29
TfiI GAWTC 2 cut(s) 223, 332
TseFI GTSAC 1 cut(s) 247
Tsp45I GTSAC 1 cut(s) 247
VpaK11BI GGWCC 3 cut(s) 53, 229, 368
XhoI CTCGAG 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.