Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005639.1

Orthogroup ID

OG0018931

Physical Location & Seq

Genomic Coordinates Forward (+)

46631 .. 48716

Gene Structure 2086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005639.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

atgaccaaaatgcttgagtttcatcacaatttacgggcattgccactggtttctggcaccgccagatccaccacttcctccctcagatctcccttgatctacttcaatcgaagagttgttgcaactgtcagactccatgcgccaaggccaggccatcccagccacgacgacggtgatgtgagctcgcagagaagggaatcagagactgcgagtagtagctatgagaatgccacgggtacaaccactacaagcatggcgtacttgccccaaaccattgtcttgtgtgagcttcgccacgacgagttcgaggcgcgagtccctacaggtccttctgatagcggatttgtttcgaaatggcggcctaaagaccgaaagaaaaagaatcctactaatgctcctgctattgcaaatgaagctgctattgaaccaaggacacgttcagcaataaagaagaaaaagaattttgctactgatactgctcctgctattgcaaatgaagctgctactgaaccaaagacacgttcagcaataaagaagaaaaagaatcctgctactgctactgcaattgcaaatgaagctgttactgaactaaggacatgttcaacaataaagaagaaaaagaaatttgacgaagagctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0001101 GO:0001558 GO:0001932 GO:0001934 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008361 GO:0009267 GO:0009605 GO:0009719 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009893 GO:0009894 GO:0009987 GO:0009991 GO:0010033 GO:0010073 GO:0010074 GO:0010154 GO:0010243 GO:0010492 GO:0010506 GO:0010562 GO:0010604 GO:0016043 GO:0019220 GO:0019222 GO:0019827 GO:0022414 GO:0023052 GO:0030307 GO:0030674 GO:0031323 GO:0031325 GO:0031329 GO:0031399 GO:0031401 GO:0031461 GO:0031667 GO:0031668 GO:0031669 GO:0031929 GO:0031931 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032535 GO:0032991 GO:0033554 GO:0033674 GO:0035556 GO:0038201 GO:0040008 GO:0042221 GO:0042325 GO:0042327 GO:0042594 GO:0043085 GO:0043200 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045927 GO:0045937 GO:0048316 GO:0048507 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0060090 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071840 GO:0071900 GO:0071902 GO:0080008 GO:0080090 GO:0090066 GO:0098727 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04714 ko04910 ko05206 map04136 map04138 map04140 map04150 map04151 map04152 map04211 map04213 map04714 map04910 map05206

Pfam Domains

Protein Families

HEAT Raptor_N WD40

Protein Analysis

213

Amino Acids

23.47

Weight (kDa)

9.97

Isoelectric Point (pI)

53.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018931)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g17230
rosa_laevigata	RLG00000013604
rosa_multiflora	Rmu_sc0005639.1_g000009 Rmu_sc0009474.1_g000008
rosa_samantha	Rh1AG205200 Rh1CG190500 Rh2CG012900 Rh2CG160000
rosa_wichuraiana	Rw1G032490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	56
AccII	CGCG	1 cut(s)	313
AciI	CCGC	3 cut(s)	60, 339, 358
AclWI	GGATC	1 cut(s)	60
AcsI	RAATTY	2 cut(s)	460, 623
AfaI	GTAC	2 cut(s)	238, 260
AfiI	CCNNNNNNNGG	1 cut(s)	149
AflIII	ACRYGT	3 cut(s)	434, 518, 596
AgsI	TTSAA	3 cut(s)	106, 425, 603
AjnI	CCWGG	1 cut(s)	148
AjuI	GAANNNNNNNTTGG	4 cut(s)	421, 453, 505, 537
AluBI	AGCT	7 cut(s)	183, 219, 289, 416, 500, 578, 637
AluI	AGCT	7 cut(s)	183, 219, 289, 416, 500, 578, 637
Alw21I	GWGCWC	1 cut(s)	185
Alw26I	GTCTC	1 cut(s)	197
AlwI	GGATC	1 cut(s)	60
AlwNI	CAGNNNCTG	1 cut(s)	206
AoxI	GGCC	3 cut(s)	146, 151, 359
ApeKI	GCWGC	2 cut(s)	416, 500
ApoI	RAATTY	2 cut(s)	460, 623
AspLEI	GCGC	2 cut(s)	142, 313
AspS9I	GGNCC	1 cut(s)	326
AsuHPI	GGTGA	1 cut(s)	185
AsuII	TTCGAA	1 cut(s)	350
AvaII	GGWCC	1 cut(s)	326
BanI	GGYRCC	1 cut(s)	56
BanII	GRGCYC	1 cut(s)	185
Bbv12I	GWGCWC	1 cut(s)	185
BbvI	GCAGC	2 cut(s)	403, 487
BccI	CCATC	1 cut(s)	162
BciT130I	CCWGG	1 cut(s)	150
BcoDI	GTCTC	1 cut(s)	197
BfmI	CTRYAG	1 cut(s)	321
BglII	AGATCT	1 cut(s)	86
BisI	GCNGC	3 cut(s)	359, 417, 501
BlsI	GCNGC	3 cut(s)	360, 418, 502
Bme1390I	CCNGG	1 cut(s)	150
Bme18I	GGWCC	1 cut(s)	326
BmgT120I	GGNCC	1 cut(s)	326
BmiI	GGNNCC	1 cut(s)	58
BmrFI	CCNGG	1 cut(s)	150
Bpu14I	TTCGAA	1 cut(s)	350
BpuEI	CTTGAG	1 cut(s)	35
BsaJI	CCNNGG	3 cut(s)	143, 231, 428
BsaXI	ACNNNNNCTCC	2 cut(s)	379, 409
Bsc4I	CCNNNNNNNGG	1 cut(s)	149
Bse1I	ACTGG	1 cut(s)	51
Bse3DI	GCAATG	1 cut(s)	38
BseBI	CCWGG	1 cut(s)	150
BseDI	CCNNGG	3 cut(s)	143, 231, 428
BseGI	GGATG	1 cut(s)	154
BseLI	CCNNNNNNNGG	1 cut(s)	149
BseMI	GCAATG	1 cut(s)	38
BseMII	CTCAG	1 cut(s)	97
BseNI	ACTGG	1 cut(s)	51
BseXI	GCAGC	2 cut(s)	403, 487
BseYI	CCCAGC	1 cut(s)	158
Bsh1236I	CGCG	1 cut(s)	313
BshFI	GGCC	3 cut(s)	148, 153, 361
BshNI	GGYRCC	1 cut(s)	56
BsiHKAI	GWGCWC	1 cut(s)	185
BslFI	GGGAC	1 cut(s)	302
BslI	CCNNNNNNNGG	1 cut(s)	149
BsmAI	GTCTC	1 cut(s)	197
BsmFI	GGGAC	1 cut(s)	302
BsmI	GAATGC	1 cut(s)	232
BsnI	GGCC	3 cut(s)	148, 153, 361
Bsp119I	TTCGAA	1 cut(s)	350
Bsp1286I	GDGCHC	1 cut(s)	185
Bsp143I	GATC	3 cut(s)	65, 86, 96
BspACI	CCGC	3 cut(s)	60, 339, 358
BspANI	GGCC	3 cut(s)	148, 153, 361
BspCNI	CTCAG	1 cut(s)	96
BspFNI	CGCG	1 cut(s)	313
BspLI	GGNNCC	1 cut(s)	58
BspPI	GGATC	1 cut(s)	60
BspQI	GCTCTTC	1 cut(s)	627
BspT104I	TTCGAA	1 cut(s)	350
BspT107I	GGYRCC	1 cut(s)	56
BsrDI	GCAATG	1 cut(s)	38
BsrI	ACTGG	1 cut(s)	51
BssECI	CCNNGG	3 cut(s)	143, 231, 428
BssMI	GATC	3 cut(s)	65, 86, 96
BssT1I	CCWWGG	2 cut(s)	143, 428
Bst2UI	CCWGG	1 cut(s)	150
Bst4CI	ACNGT	2 cut(s)	127, 173
Bst6I	CTCTTC	2 cut(s)	106, 627
BstBI	TTCGAA	1 cut(s)	350
BstC8I	GCNNGC	1 cut(s)	185
BstDEI	CTNAG	2 cut(s)	83, 590
BstDSI	CCRYGG	1 cut(s)	231
BstF5I	GGATG	1 cut(s)	154
BstFNI	CGCG	1 cut(s)	313
BstHHI	GCGC	2 cut(s)	142, 313
BstKTI	GATC	3 cut(s)	68, 89, 99
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	3 cut(s)	65, 86, 96
BstMWI	GCNNNNNNNGC	4 cut(s)	159, 413, 497, 575
BstNI	CCWGG	1 cut(s)	150
BstNSI	RCATGY	1 cut(s)	600
BstSCI	CCNGG	1 cut(s)	148
BstSFI	CTRYAG	1 cut(s)	321
BstUI	CGCG	1 cut(s)	313
BstV1I	GCAGC	2 cut(s)	403, 487
BstX2I	RGATCY	2 cut(s)	65, 86
BstYI	RGATCY	2 cut(s)	65, 86
BsuRI	GGCC	3 cut(s)	148, 153, 361
BtgI	CCRYGG	1 cut(s)	231
BtsCI	GGATG	1 cut(s)	154
BtsIMutI	CAGTG	1 cut(s)	44
Cac8I	GCNNGC	1 cut(s)	185
CaiI	CAGNNNCTG	1 cut(s)	206
CfoI	GCGC	2 cut(s)	142, 313
Cfr13I	GGNCC	1 cut(s)	326
Csp6I	GTAC	2 cut(s)	237, 259
CviAII	CATG	3 cut(s)	137, 253, 597
CviQI	GTAC	2 cut(s)	237, 259
DdeI	CTNAG	2 cut(s)	83, 590
DpnI	GATC	3 cut(s)	67, 88, 98
DpnII	GATC	3 cut(s)	65, 86, 96
Eam1104I	CTCTTC	2 cut(s)	106, 627
EarI	CTCTTC	2 cut(s)	106, 627
Ecl136II	GAGCTC	1 cut(s)	183
Eco130I	CCWWGG	2 cut(s)	143, 428
Eco24I	GRGCYC	1 cut(s)	185
Eco47I	GGWCC	1 cut(s)	326
Eco53kI	GAGCTC	1 cut(s)	183
EcoICRI	GAGCTC	1 cut(s)	183
EcoO109I	RGGNCCY	1 cut(s)	326
EcoRII	CCWGG	1 cut(s)	148
EcoT14I	CCWWGG	2 cut(s)	143, 428
EcoT38I	GRGCYC	1 cut(s)	185
ErhI	CCWWGG	2 cut(s)	143, 428
FaeI	CATG	3 cut(s)	140, 256, 600
FaiI	YATR	4 cut(s)	138, 222, 254, 598
FaqI	GGGAC	1 cut(s)	302
FatI	CATG	3 cut(s)	136, 252, 596
Fnu4HI	GCNGC	3 cut(s)	359, 417, 501
FokI	GGATG	1 cut(s)	141
FriOI	GRGCYC	1 cut(s)	185
Fsp4HI	GCNGC	3 cut(s)	359, 417, 501
GlaI	GCGC	2 cut(s)	141, 312
GluI	GCNGC	3 cut(s)	359, 417, 501
GsaI	CCCAGC	1 cut(s)	162
HaeIII	GGCC	3 cut(s)	148, 153, 361
HhaI	GCGC	2 cut(s)	142, 313
Hin1II	CATG	3 cut(s)	140, 256, 600
Hin6I	GCGC	2 cut(s)	140, 311
HinP1I	GCGC	2 cut(s)	140, 311
HinfI	GANTC	5 cut(s)	132, 197, 315, 382, 544
HphI	GGTGA	1 cut(s)	185
Hpy188I	TCNGA	4 cut(s)	86, 131, 202, 334
Hpy99I	CGWCG	3 cut(s)	170, 173, 302
HpyAV	CCTTC	2 cut(s)	186, 339
HpyCH4III	ACNGT	2 cut(s)	127, 173
HpyCH4IV	ACGT	2 cut(s)	436, 520
HpyCH4V	TGCA	5 cut(s)	122, 407, 491, 563, 569
HpyF10VI	GCNNNNNNNGC	4 cut(s)	159, 413, 497, 575
HpyF3I	CTNAG	2 cut(s)	83, 590
HpySE526I	ACGT	2 cut(s)	436, 520
Hsp92II	CATG	3 cut(s)	140, 256, 600
HspAI	GCGC	2 cut(s)	140, 311
Kzo9I	GATC	3 cut(s)	65, 86, 96
LguI	GCTCTTC	1 cut(s)	627
LmnI	GCTCC	2 cut(s)	400, 484
Lsp1109I	GCAGC	2 cut(s)	403, 487
MaeII	ACGT	2 cut(s)	436, 520
MaeIII	GTNAC	1 cut(s)	580
MalI	GATC	3 cut(s)	67, 88, 98
MboI	GATC	3 cut(s)	65, 86, 96
MboII	GAAGA	4 cut(s)	123, 463, 547, 625
MfeI	CAATTG	1 cut(s)	564
MflI	RGATCY	2 cut(s)	65, 86
MhlI	GDGCHC	1 cut(s)	185
MluCI	AATT	4 cut(s)	28, 460, 564, 623
MlyI	GAGTC	2 cut(s)	126, 324
MnlI	CCTC	3 cut(s)	88, 92, 301
MspR9I	CCNGG	1 cut(s)	150
MunI	CAATTG	1 cut(s)	564
Mva1269I	GAATGC	1 cut(s)	232
MvaI	CCWGG	1 cut(s)	150
MvnI	CGCG	1 cut(s)	313
MwoI	GCNNNNNNNGC	4 cut(s)	159, 413, 497, 575
NdeII	GATC	3 cut(s)	65, 86, 96
NlaIII	CATG	3 cut(s)	140, 256, 600
NlaIV	GGNNCC	1 cut(s)	58
NspI	RCATGY	1 cut(s)	600
NspV	TTCGAA	1 cut(s)	350
PciI	ACATGT	1 cut(s)	596
PciSI	GCTCTTC	1 cut(s)	627
PcsI	WCGNNNNNNNCGW	1 cut(s)	303
PctI	GAATGC	1 cut(s)	232
PfeI	GAWTC	3 cut(s)	197, 382, 544
PkrI	GCNGC	3 cut(s)	360, 418, 502
PleI	GAGTC	2 cut(s)	126, 323
PpsI	GAGTC	2 cut(s)	126, 323
PpuMI	RGGWCCY	1 cut(s)	326
PscI	ACATGT	1 cut(s)	596
Psp124BI	GAGCTC	1 cut(s)	185
Psp5II	RGGWCCY	1 cut(s)	326
Psp6I	CCWGG	1 cut(s)	148
PspFI	CCCAGC	1 cut(s)	158
PspGI	CCWGG	1 cut(s)	148
PspN4I	GGNNCC	1 cut(s)	58
PspPI	GGNCC	1 cut(s)	326
PspPPI	RGGWCCY	1 cut(s)	326
PstNI	CAGNNNCTG	1 cut(s)	206
PsuI	RGATCY	2 cut(s)	65, 86
RsaI	GTAC	2 cut(s)	238, 260
RsaNI	GTAC	2 cut(s)	237, 259
SacI	GAGCTC	1 cut(s)	185
SapI	GCTCTTC	1 cut(s)	627
SatI	GCNGC	3 cut(s)	359, 417, 501
Sau3AI	GATC	3 cut(s)	65, 86, 96
Sau96I	GGNCC	1 cut(s)	326
SchI	GAGTC	2 cut(s)	126, 324
ScrFI	CCNGG	1 cut(s)	150
SduI	GDGCHC	1 cut(s)	185
SfcI	CTRYAG	1 cut(s)	321
SfuI	TTCGAA	1 cut(s)	350
SinI	GGWCC	1 cut(s)	326
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
Sse9I	AATT	4 cut(s)	28, 460, 564, 623
SsiI	CCGC	3 cut(s)	60, 339, 358
SstI	GAGCTC	1 cut(s)	185
StyD4I	CCNGG	1 cut(s)	148
StyI	CCWWGG	2 cut(s)	143, 428
TaaI	ACNGT	2 cut(s)	127, 173
TaiI	ACGT	2 cut(s)	439, 523
TaqI	TCGA	3 cut(s)	109, 306, 350
TaqII	GACCGA	1 cut(s)	384
TasI	AATT	4 cut(s)	28, 460, 564, 623
TauI	GCSGC	1 cut(s)	361
TfiI	GAWTC	3 cut(s)	197, 382, 544
TscAI	CASTG	1 cut(s)	51
TseI	GCWGC	2 cut(s)	416, 500
TspDTI	ATGAA	4 cut(s)	11, 426, 510, 588
TspRI	CASTG	1 cut(s)	51
VpaK11BI	GGWCC	1 cut(s)	326
XapI	RAATTY	2 cut(s)	460, 623
XceI	RCATGY	1 cut(s)	600
XcmI	CCANNNNNNNNNTGG	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.