Rh1CG190500

Regulatory-associated protein of TOR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0018931
Physical Location & Seq
Forward (+)
41386325 .. 41431866
45542 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG190500.1

Sequence Viewer

Length: 711 bp
ATGGTGGAGCTGAAGGGGGAGATTAAGAGGAACAAGGAGGAGAAGAGGAGGAAGAGGGAGGAGAGGGAGAAGAAGAAGAAGGAGAATATTCTCAAGACTGGGACCAAACTGCAGATTATTTCCAACCCCAAGACGATTAAGAGGATTTTGAAAACCAAGGCTAGGAATCAACTCAAGCCTATTCCGGAGGAGATGATCAAGAGGAACAATAAGGTTTCTGGCACCGCCAGATCCACCACTTCCTCCCTCAGATCTCCCTTGATCTACTTCAATCGAAGAGTTGTTGCAACTGTCAGACTCCATGCGCCAAGGCCAGGCCATCCCAGCCACAACGACGGTGATGTGAGCTCGCAGAGAAGGGAATCAGAGACTGCGAGTAGTAGCTATGAGAATGCCACGGGTACAACCACTACAAGCATGGCGTACTTGCCCCAAACCATTGTCTTGTGTGAGCTTCGCCACGACGAGTTCGAGGCGCGAGTCCCTTCAGGTCCTTCTGATAGCGGATTTGTTTCGAAATGGCGGCCTAAAGATCGAGTGCAAAATGGTGATCTTGCTATTGATAATGACACATTCGACACGAAGACCTTCTTCTCAAGCACTAGCAATGGCCAAAAGAATGAGAGAAATCCAGCTAAGGACAAGATTTGTGAAGAATCTAATCTGAATCAGAACTGCCTTGATCTTCTTTGGCCAATAGTTGCTACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000151 GO:0001101 GO:0001558 GO:0001932 GO:0001934 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008361 GO:0009267 GO:0009605 GO:0009719 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009893 GO:0009894 GO:0009987 GO:0009991 GO:0010033 GO:0010073 GO:0010074 GO:0010154 GO:0010243 GO:0010492 GO:0010506 GO:0010562 GO:0010604 GO:0016043 GO:0019220 GO:0019222 GO:0019827 GO:0022414 GO:0023052 GO:0030307 GO:0030674 GO:0031323 GO:0031325 GO:0031329 GO:0031399 GO:0031401 GO:0031461 GO:0031667 GO:0031668 GO:0031669 GO:0031929 GO:0031931 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032535 GO:0032991 GO:0033554 GO:0033674 GO:0035556 GO:0038201 GO:0040008 GO:0042221 GO:0042325 GO:0042327 GO:0042594 GO:0043085 GO:0043200 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045927 GO:0045937 GO:0048316 GO:0048507 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0060090 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071840 GO:0071900 GO:0071902 GO:0080008 GO:0080090 GO:0090066 GO:0098727 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902494 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko04136 ko04138 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04714 ko04910 ko05206 map04136 map04138 map04140 map04150 map04151 map04152 map04211 map04213 map04714 map04910 map05206
Pfam Domains
Protein Families
HEAT Raptor_N WD40

Protein Analysis

236

Amino Acids

26.85

Weight (kDa)

9.85

Isoelectric Point (pI)

57.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018931)

Species Orthologous Gene IDs
pyrus_communis pycom12g17230
rosa_laevigata RLG00000013604
rosa_multiflora Rmu_sc0005639.1_g000009 Rmu_sc0009474.1_g000008
rosa_samantha Rh1AG205200 Rh1CG190500 Rh2CG012900 Rh2CG160000
rosa_wichuraiana Rw1G032490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 221
AccII CGCG 1 cut(s) 478
AccIII TCCGGA 1 cut(s) 184
AciI CCGC 3 cut(s) 225, 504, 523
AclWI GGATC 1 cut(s) 225
AcoI YGGCCR 2 cut(s) 610, 692
AcuI CTGAAG 2 cut(s) 32, 471
AfaI GTAC 2 cut(s) 403, 425
AfiI CCNNNNNNNGG 2 cut(s) 162, 314
AgsI TTSAA 2 cut(s) 151, 271
AjnI CCWGG 1 cut(s) 313
AluBI AGCT 5 cut(s) 10, 348, 384, 454, 635
AluI AGCT 5 cut(s) 10, 348, 384, 454, 635
Alw21I GWGCWC 1 cut(s) 350
Alw26I GTCTC 1 cut(s) 362
AlwI GGATC 1 cut(s) 225
AlwNI CAGNNNCTG 1 cut(s) 371
Aor13HI TCCGGA 1 cut(s) 184
AoxI GGCC 5 cut(s) 311, 316, 524, 610, 692
Asp700I GAANNNNTTC 1 cut(s) 587
AspLEI GCGC 2 cut(s) 307, 478
AspS9I GGNCC 2 cut(s) 102, 491
AsuHPI GGTGA 2 cut(s) 350, 560
AsuII TTCGAA 1 cut(s) 515
AvaII GGWCC 2 cut(s) 102, 491
BalI TGGCCA 2 cut(s) 612, 694
BanI GGYRCC 1 cut(s) 221
BanII GRGCYC 1 cut(s) 350
BbsI GAAGAC 1 cut(s) 590
Bbv12I GWGCWC 1 cut(s) 350
BccI CCATC 1 cut(s) 327
BciT130I CCWGG 1 cut(s) 315
BclI TGATCA 1 cut(s) 195
BcoDI GTCTC 1 cut(s) 362
BfaI CTAG 2 cut(s) 162, 603
BfmI CTRYAG 1 cut(s) 110
BglII AGATCT 1 cut(s) 251
BisI GCNGC 1 cut(s) 524
BlsI GCNGC 1 cut(s) 525
Bme1390I CCNGG 1 cut(s) 315
Bme18I GGWCC 2 cut(s) 102, 491
BmgT120I GGNCC 2 cut(s) 102, 491
BmiI GGNNCC 2 cut(s) 103, 223
BmrFI CCNGG 1 cut(s) 315
BmrI ACTGGG 1 cut(s) 108
BmuI ACTGGG 1 cut(s) 108
BpiI GAAGAC 1 cut(s) 590
Bpu10I CCTNAGC 1 cut(s) 636
Bpu14I TTCGAA 1 cut(s) 515
BpuEI CTTGAG 3 cut(s) 77, 158, 580
BsaJI CCNNGG 3 cut(s) 156, 308, 396
BsaWI WCCGGW 1 cut(s) 184
Bsc4I CCNNNNNNNGG 2 cut(s) 162, 314
Bse1I ACTGG 1 cut(s) 103
Bse3DI GCAATG 1 cut(s) 613
BseAI TCCGGA 1 cut(s) 184
BseBI CCWGG 1 cut(s) 315
BseDI CCNNGG 3 cut(s) 156, 308, 396
BseGI GGATG 1 cut(s) 319
BseLI CCNNNNNNNGG 2 cut(s) 162, 314
BseMI GCAATG 1 cut(s) 613
BseMII CTCAG 1 cut(s) 262
BseNI ACTGG 1 cut(s) 103
BseRI GAGGAG 4 cut(s) 53, 61, 74, 203
BseYI CCCAGC 1 cut(s) 323
Bsh1236I CGCG 1 cut(s) 478
BshFI GGCC 5 cut(s) 313, 318, 526, 612, 694
BshNI GGYRCC 1 cut(s) 221
BsiHKAI GWGCWC 1 cut(s) 350
BsiSI CCGG 1 cut(s) 185
BslFI GGGAC 2 cut(s) 115, 467
BslI CCNNNNNNNGG 2 cut(s) 162, 314
BsmAI GTCTC 1 cut(s) 362
BsmFI GGGAC 2 cut(s) 115, 467
BsmI GAATGC 1 cut(s) 397
BsnI GGCC 5 cut(s) 313, 318, 526, 612, 694
Bsp119I TTCGAA 1 cut(s) 515
Bsp1286I GDGCHC 1 cut(s) 350
Bsp13I TCCGGA 1 cut(s) 184
Bsp143I GATC 7 cut(s) 195, 230, 251, 261, 532, 550, 682
BspACI CCGC 3 cut(s) 225, 504, 523
BspANI GGCC 5 cut(s) 313, 318, 526, 612, 694
BspCNI CTCAG 1 cut(s) 261
BspEI TCCGGA 1 cut(s) 184
BspFNI CGCG 1 cut(s) 478
BspLI GGNNCC 2 cut(s) 103, 223
BspMAI CTGCAG 1 cut(s) 114
BspPI GGATC 1 cut(s) 225
BspT104I TTCGAA 1 cut(s) 515
BspT107I GGYRCC 1 cut(s) 221
BsrDI GCAATG 1 cut(s) 613
BsrI ACTGG 1 cut(s) 103
BssECI CCNNGG 3 cut(s) 156, 308, 396
BssMI GATC 7 cut(s) 195, 230, 251, 261, 532, 550, 682
BssT1I CCWWGG 2 cut(s) 156, 308
Bst2UI CCWGG 1 cut(s) 315
Bst4CI ACNGT 2 cut(s) 292, 338
Bst6I CTCTTC 3 cut(s) 38, 47, 271
BstBI TTCGAA 1 cut(s) 515
BstC8I GCNNGC 1 cut(s) 350
BstDEI CTNAG 2 cut(s) 248, 636
BstDSI CCRYGG 1 cut(s) 396
BstF5I GGATG 1 cut(s) 319
BstFNI CGCG 1 cut(s) 478
BstHHI GCGC 2 cut(s) 307, 478
BstKTI GATC 7 cut(s) 198, 233, 254, 264, 535, 553, 685
BstMAI GTCTC 1 cut(s) 362
BstMBI GATC 7 cut(s) 195, 230, 251, 261, 532, 550, 682
BstMWI GCNNNNNNNGC 1 cut(s) 324
BstNI CCWGG 1 cut(s) 315
BstSCI CCNGG 1 cut(s) 313
BstSFI CTRYAG 1 cut(s) 110
BstUI CGCG 1 cut(s) 478
BstV2I GAAGAC 1 cut(s) 590
BstX2I RGATCY 2 cut(s) 230, 251
BstYI RGATCY 2 cut(s) 230, 251
BsuRI GGCC 5 cut(s) 313, 318, 526, 612, 694
BtgI CCRYGG 1 cut(s) 396
BtsCI GGATG 1 cut(s) 319
Cac8I GCNNGC 1 cut(s) 350
CaiI CAGNNNCTG 1 cut(s) 371
CfoI GCGC 2 cut(s) 307, 478
Cfr13I GGNCC 2 cut(s) 102, 491
Csp6I GTAC 2 cut(s) 402, 424
CviAII CATG 2 cut(s) 302, 418
CviQI GTAC 2 cut(s) 402, 424
DdeI CTNAG 2 cut(s) 248, 636
DpnI GATC 7 cut(s) 197, 232, 253, 263, 534, 552, 684
DpnII GATC 7 cut(s) 195, 230, 251, 261, 532, 550, 682
EaeI YGGCCR 2 cut(s) 610, 692
Eam1104I CTCTTC 3 cut(s) 38, 47, 271
EarI CTCTTC 3 cut(s) 38, 47, 271
Ecl136II GAGCTC 1 cut(s) 348
Eco130I CCWWGG 2 cut(s) 156, 308
Eco24I GRGCYC 1 cut(s) 350
Eco47I GGWCC 2 cut(s) 102, 491
Eco53kI GAGCTC 1 cut(s) 348
Eco57I CTGAAG 2 cut(s) 32, 471
EcoICRI GAGCTC 1 cut(s) 348
EcoO109I RGGNCCY 1 cut(s) 491
EcoRII CCWGG 1 cut(s) 313
EcoT14I CCWWGG 2 cut(s) 156, 308
EcoT38I GRGCYC 1 cut(s) 350
ErhI CCWWGG 2 cut(s) 156, 308
FaeI CATG 2 cut(s) 305, 421
FaiI YATR 4 cut(s) 303, 387, 419, 709
FalI AAGNNNNNCTT 2 cut(s) 575, 607
FaqI GGGAC 2 cut(s) 115, 467
FatI CATG 2 cut(s) 301, 417
FbaI TGATCA 1 cut(s) 195
Fnu4HI GCNGC 1 cut(s) 524
FokI GGATG 1 cut(s) 306
FriOI GRGCYC 1 cut(s) 350
Fsp4HI GCNGC 1 cut(s) 524
FspBI CTAG 2 cut(s) 162, 603
GlaI GCGC 2 cut(s) 306, 477
GluI GCNGC 1 cut(s) 524
GsaI CCCAGC 1 cut(s) 327
HaeIII GGCC 5 cut(s) 313, 318, 526, 612, 694
HapII CCGG 1 cut(s) 185
HhaI GCGC 2 cut(s) 307, 478
Hin1II CATG 2 cut(s) 305, 421
Hin6I GCGC 2 cut(s) 305, 476
HinP1I GCGC 2 cut(s) 305, 476
HinfI GANTC 6 cut(s) 166, 297, 362, 480, 656, 667
HpaII CCGG 1 cut(s) 185
HphI GGTGA 2 cut(s) 350, 560
Hpy188I TCNGA 6 cut(s) 251, 296, 367, 499, 666, 672
Hpy188III TCNNGA 3 cut(s) 94, 185, 199
Hpy99I CGWCG 2 cut(s) 338, 467
HpyAV CCTTC 6 cut(s) 7, 73, 351, 495, 504, 598
HpyCH4III ACNGT 2 cut(s) 292, 338
HpyCH4V TGCA 3 cut(s) 112, 287, 541
HpyF10VI GCNNNNNNNGC 1 cut(s) 324
HpyF3I CTNAG 2 cut(s) 248, 636
Hsp92II CATG 2 cut(s) 305, 421
HspAI GCGC 2 cut(s) 305, 476
Kpn2I TCCGGA 1 cut(s) 184
Ksp22I TGATCA 1 cut(s) 195
Kzo9I GATC 7 cut(s) 195, 230, 251, 261, 532, 550, 682
LmnI GCTCC 1 cut(s) 7
LpnPI CCDG 9 cut(s) 84, 198, 204, 241, 300, 327, 337, 474, 645
MaeI CTAG 2 cut(s) 162, 603
MalI GATC 7 cut(s) 197, 232, 253, 263, 534, 552, 684
MboI GATC 7 cut(s) 195, 230, 251, 261, 532, 550, 682
MflI RGATCY 2 cut(s) 230, 251
MhlI GDGCHC 1 cut(s) 350
MlsI TGGCCA 2 cut(s) 612, 694
MluNI TGGCCA 2 cut(s) 612, 694
MlyI GAGTC 2 cut(s) 291, 489
MmeI TCCRAC 1 cut(s) 147
Mox20I TGGCCA 2 cut(s) 612, 694
MroI TCCGGA 1 cut(s) 184
MroXI GAANNNNTTC 1 cut(s) 587
MscI TGGCCA 2 cut(s) 612, 694
MseI TTAA 2 cut(s) 24, 138
Msp20I TGGCCA 2 cut(s) 612, 694
MspI CCGG 1 cut(s) 185
MspR9I CCNGG 1 cut(s) 315
Mva1269I GAATGC 1 cut(s) 397
MvaI CCWGG 1 cut(s) 315
MvnI CGCG 1 cut(s) 478
MwoI GCNNNNNNNGC 1 cut(s) 324
NdeII GATC 7 cut(s) 195, 230, 251, 261, 532, 550, 682
NlaIII CATG 2 cut(s) 305, 421
NlaIV GGNNCC 2 cut(s) 103, 223
NspV TTCGAA 1 cut(s) 515
PcsI WCGNNNNNNNCGW 1 cut(s) 468
PctI GAATGC 1 cut(s) 397
PdmI GAANNNNTTC 1 cut(s) 587
PfeI GAWTC 4 cut(s) 166, 362, 656, 667
PkrI GCNGC 1 cut(s) 525
PleI GAGTC 2 cut(s) 291, 488
PpsI GAGTC 2 cut(s) 291, 488
PpuMI RGGWCCY 1 cut(s) 491
Psp124BI GAGCTC 1 cut(s) 350
Psp5II RGGWCCY 1 cut(s) 491
Psp6I CCWGG 1 cut(s) 313
PspFI CCCAGC 1 cut(s) 323
PspGI CCWGG 1 cut(s) 313
PspN4I GGNNCC 2 cut(s) 103, 223
PspPI GGNCC 2 cut(s) 102, 491
PspPPI RGGWCCY 1 cut(s) 491
PstI CTGCAG 1 cut(s) 114
PstNI CAGNNNCTG 1 cut(s) 371
PsuI RGATCY 2 cut(s) 230, 251
RsaI GTAC 2 cut(s) 403, 425
RsaNI GTAC 2 cut(s) 402, 424
SacI GAGCTC 1 cut(s) 350
SaqAI TTAA 2 cut(s) 24, 138
SatI GCNGC 1 cut(s) 524
Sau3AI GATC 7 cut(s) 195, 230, 251, 261, 532, 550, 682
Sau96I GGNCC 2 cut(s) 102, 491
SchI GAGTC 2 cut(s) 291, 489
ScrFI CCNGG 1 cut(s) 315
SduI GDGCHC 1 cut(s) 350
SetI ASST 8 cut(s) 12, 216, 350, 386, 456, 493, 590, 637
SfcI CTRYAG 1 cut(s) 110
SfuI TTCGAA 1 cut(s) 515
SinI GGWCC 2 cut(s) 102, 491
SmlI CTYRAG 3 cut(s) 92, 173, 595
SmoI CTYRAG 3 cut(s) 92, 173, 595
SsiI CCGC 3 cut(s) 225, 504, 523
SspI AATATT 1 cut(s) 88
SspMI CTAG 2 cut(s) 162, 603
SstI GAGCTC 1 cut(s) 350
StyD4I CCNGG 1 cut(s) 313
StyI CCWWGG 2 cut(s) 156, 308
TaaI ACNGT 2 cut(s) 292, 338
TaqI TCGA 5 cut(s) 274, 471, 515, 535, 576
TauI GCSGC 1 cut(s) 526
TfiI GAWTC 4 cut(s) 166, 362, 656, 667
Tru1I TTAA 2 cut(s) 24, 138
Tru9I TTAA 2 cut(s) 24, 138
VpaK11BI GGWCC 2 cut(s) 102, 491
XcmI CCANNNNNNNNNTGG 1 cut(s) 415
XmnI GAANNNNTTC 1 cut(s) 587
XspI CTAG 2 cut(s) 162, 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.