Rh1AG205200

Regulatory-associated protein of TOR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0018931
Physical Location & Seq
Forward (+)
38889892 .. 38891221
1330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG205200.1

Sequence Viewer

Length: 153 bp
ATGGCGTACTTGCCCCAAACCATTGTCTTGTGTGAGCTTCGCCACGACGAGTTCGAGGCGCGAGTCCCTTCAGGTCCTTCTGATAGCGGATTTGTTTCGAAATGGCGGCCTAAAGATCGAGTGCAAAATGGTGATCTTGCTATTGGTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000151 GO:0001101 GO:0001558 GO:0001932 GO:0001934 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008361 GO:0009267 GO:0009605 GO:0009719 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009893 GO:0009894 GO:0009987 GO:0009991 GO:0010033 GO:0010073 GO:0010074 GO:0010154 GO:0010243 GO:0010492 GO:0010506 GO:0010562 GO:0010604 GO:0016043 GO:0019220 GO:0019222 GO:0019827 GO:0022414 GO:0023052 GO:0030307 GO:0030674 GO:0031323 GO:0031325 GO:0031329 GO:0031399 GO:0031401 GO:0031461 GO:0031667 GO:0031668 GO:0031669 GO:0031929 GO:0031931 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032535 GO:0032991 GO:0033554 GO:0033674 GO:0035556 GO:0038201 GO:0040008 GO:0042221 GO:0042325 GO:0042327 GO:0042594 GO:0043085 GO:0043200 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045927 GO:0045937 GO:0048316 GO:0048507 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0060090 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071840 GO:0071900 GO:0071902 GO:0080008 GO:0080090 GO:0090066 GO:0098727 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902494 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko04136 ko04138 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04714 ko04910 ko05206 map04136 map04138 map04140 map04150 map04151 map04152 map04211 map04213 map04714 map04910 map05206
Pfam Domains
Protein Families
HEAT Raptor_N WD40

Protein Analysis

50

Amino Acids

5.67

Weight (kDa)

5.59

Isoelectric Point (pI)

43.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018931)

Species Orthologous Gene IDs
pyrus_communis pycom12g17230
rosa_laevigata RLG00000013604
rosa_multiflora Rmu_sc0005639.1_g000009 Rmu_sc0009474.1_g000008
rosa_samantha Rh1AG205200 Rh1CG190500 Rh2CG012900 Rh2CG160000
rosa_wichuraiana Rw1G032490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 61
AciI CCGC 2 cut(s) 87, 106
AcuI CTGAAG 1 cut(s) 54
AfaI GTAC 1 cut(s) 8
AluBI AGCT 1 cut(s) 37
AluI AGCT 1 cut(s) 37
AoxI GGCC 1 cut(s) 107
AspLEI GCGC 1 cut(s) 61
AspS9I GGNCC 1 cut(s) 74
AsuHPI GGTGA 1 cut(s) 143
AsuII TTCGAA 1 cut(s) 98
AvaII GGWCC 1 cut(s) 74
BisI GCNGC 1 cut(s) 107
BlsI GCNGC 1 cut(s) 108
Bme18I GGWCC 1 cut(s) 74
BmgT120I GGNCC 1 cut(s) 74
Bpu14I TTCGAA 1 cut(s) 98
Bsh1236I CGCG 1 cut(s) 61
BshFI GGCC 1 cut(s) 109
BslFI GGGAC 1 cut(s) 50
BsmFI GGGAC 1 cut(s) 50
BsnI GGCC 1 cut(s) 109
Bsp119I TTCGAA 1 cut(s) 98
Bsp143I GATC 2 cut(s) 115, 133
BspACI CCGC 2 cut(s) 87, 106
BspANI GGCC 1 cut(s) 109
BspFNI CGCG 1 cut(s) 61
BspT104I TTCGAA 1 cut(s) 98
BssMI GATC 2 cut(s) 115, 133
BstBI TTCGAA 1 cut(s) 98
BstFNI CGCG 1 cut(s) 61
BstHHI GCGC 1 cut(s) 61
BstKTI GATC 2 cut(s) 118, 136
BstMBI GATC 2 cut(s) 115, 133
BstUI CGCG 1 cut(s) 61
BsuRI GGCC 1 cut(s) 109
CfoI GCGC 1 cut(s) 61
Cfr13I GGNCC 1 cut(s) 74
Csp6I GTAC 1 cut(s) 7
CviJI RGCY 2 cut(s) 37, 109
CviKI_1 RGCY 2 cut(s) 37, 109
CviQI GTAC 1 cut(s) 7
DpnI GATC 2 cut(s) 117, 135
DpnII GATC 2 cut(s) 115, 133
Eco47I GGWCC 1 cut(s) 74
Eco57I CTGAAG 1 cut(s) 54
EcoO109I RGGNCCY 1 cut(s) 74
FaqI GGGAC 1 cut(s) 50
Fnu4HI GCNGC 1 cut(s) 107
Fsp4HI GCNGC 1 cut(s) 107
GlaI GCGC 1 cut(s) 60
GluI GCNGC 1 cut(s) 107
HaeIII GGCC 1 cut(s) 109
HhaI GCGC 1 cut(s) 61
Hin6I GCGC 1 cut(s) 59
HinP1I GCGC 1 cut(s) 59
HinfI GANTC 1 cut(s) 63
HphI GGTGA 1 cut(s) 143
Hpy188I TCNGA 1 cut(s) 82
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 2 cut(s) 78, 87
HpyCH4V TGCA 1 cut(s) 124
HspAI GCGC 1 cut(s) 59
Kzo9I GATC 2 cut(s) 115, 133
LpnPI CCDG 1 cut(s) 57
MalI GATC 2 cut(s) 117, 135
MboI GATC 2 cut(s) 115, 133
MlyI GAGTC 1 cut(s) 72
MnlI CCTC 1 cut(s) 49
MvnI CGCG 1 cut(s) 61
NdeII GATC 2 cut(s) 115, 133
NspV TTCGAA 1 cut(s) 98
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PkrI GCNGC 1 cut(s) 108
PleI GAGTC 1 cut(s) 71
PpsI GAGTC 1 cut(s) 71
PpuMI RGGWCCY 1 cut(s) 74
Psp5II RGGWCCY 1 cut(s) 74
PspPI GGNCC 1 cut(s) 74
PspPPI RGGWCCY 1 cut(s) 74
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
SatI GCNGC 1 cut(s) 107
Sau3AI GATC 2 cut(s) 115, 133
Sau96I GGNCC 1 cut(s) 74
SchI GAGTC 1 cut(s) 72
SetI ASST 2 cut(s) 39, 76
SfuI TTCGAA 1 cut(s) 98
SinI GGWCC 1 cut(s) 74
SsiI CCGC 2 cut(s) 87, 106
TaqI TCGA 3 cut(s) 54, 98, 118
TauI GCSGC 1 cut(s) 109
VpaK11BI GGWCC 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.