Rh2CG012900

Regulatory-associated protein of TOR

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Reverse (-)
1024065 .. 1025616
1552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG012900.1

Sequence Viewer

Length: 153 bp
ATGGCGTACTTGCCCCAAACCATTGTCTTGTGTGAGCTTCGCCACGACGAGTTCGAGGCGCGAGTCCCTACAGGTCCTTCTGATAGCGGATTTGTTTCGAAATGGCGGCCTAAAGACCGAGTGCAAAATGGTGATCTTGCTATTGGTTGGTAA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

50

Amino Acids

5.69

Weight (kDa)

5.59

Isoelectric Point (pI)

37.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018931)

Species Orthologous Gene IDs
pyrus_communis pycom12g17230
rosa_laevigata RLG00000013604
rosa_multiflora Rmu_sc0005639.1_g000009 Rmu_sc0009474.1_g000008
rosa_samantha Rh1AG205200 Rh1CG190500 Rh2CG012900 Rh2CG160000
rosa_wichuraiana Rw1G032490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 61
AciI CCGC 2 cut(s) 87, 106
AfaI GTAC 1 cut(s) 8
AluBI AGCT 1 cut(s) 37
AluI AGCT 1 cut(s) 37
AoxI GGCC 1 cut(s) 107
AspLEI GCGC 1 cut(s) 61
AspS9I GGNCC 1 cut(s) 74
AsuHPI GGTGA 1 cut(s) 143
AsuII TTCGAA 1 cut(s) 98
AvaII GGWCC 1 cut(s) 74
BfmI CTRYAG 1 cut(s) 69
BisI GCNGC 1 cut(s) 107
BlsI GCNGC 1 cut(s) 108
Bme18I GGWCC 1 cut(s) 74
BmgT120I GGNCC 1 cut(s) 74
Bpu14I TTCGAA 1 cut(s) 98
Bsh1236I CGCG 1 cut(s) 61
BshFI GGCC 1 cut(s) 109
BslFI GGGAC 1 cut(s) 50
BsmFI GGGAC 1 cut(s) 50
BsnI GGCC 1 cut(s) 109
Bsp119I TTCGAA 1 cut(s) 98
Bsp143I GATC 1 cut(s) 133
BspACI CCGC 2 cut(s) 87, 106
BspANI GGCC 1 cut(s) 109
BspFNI CGCG 1 cut(s) 61
BspT104I TTCGAA 1 cut(s) 98
BssMI GATC 1 cut(s) 133
BstBI TTCGAA 1 cut(s) 98
BstFNI CGCG 1 cut(s) 61
BstHHI GCGC 1 cut(s) 61
BstKTI GATC 1 cut(s) 136
BstMBI GATC 1 cut(s) 133
BstSFI CTRYAG 1 cut(s) 69
BstUI CGCG 1 cut(s) 61
BsuRI GGCC 1 cut(s) 109
CfoI GCGC 1 cut(s) 61
Cfr13I GGNCC 1 cut(s) 74
Csp6I GTAC 1 cut(s) 7
CviJI RGCY 2 cut(s) 37, 109
CviKI_1 RGCY 2 cut(s) 37, 109
CviQI GTAC 1 cut(s) 7
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
Eco47I GGWCC 1 cut(s) 74
EcoO109I RGGNCCY 1 cut(s) 74
FaqI GGGAC 1 cut(s) 50
Fnu4HI GCNGC 1 cut(s) 107
Fsp4HI GCNGC 1 cut(s) 107
GlaI GCGC 1 cut(s) 60
GluI GCNGC 1 cut(s) 107
HaeIII GGCC 1 cut(s) 109
HhaI GCGC 1 cut(s) 61
Hin6I GCGC 1 cut(s) 59
HinP1I GCGC 1 cut(s) 59
HinfI GANTC 1 cut(s) 63
HphI GGTGA 1 cut(s) 143
Hpy188I TCNGA 1 cut(s) 82
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 1 cut(s) 87
HpyCH4V TGCA 1 cut(s) 124
HspAI GCGC 1 cut(s) 59
Kzo9I GATC 1 cut(s) 133
LpnPI CCDG 1 cut(s) 57
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MlyI GAGTC 1 cut(s) 72
MnlI CCTC 1 cut(s) 49
MvnI CGCG 1 cut(s) 61
NdeII GATC 1 cut(s) 133
NspV TTCGAA 1 cut(s) 98
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PkrI GCNGC 1 cut(s) 108
PleI GAGTC 1 cut(s) 71
PpsI GAGTC 1 cut(s) 71
PpuMI RGGWCCY 1 cut(s) 74
Psp5II RGGWCCY 1 cut(s) 74
PspPI GGNCC 1 cut(s) 74
PspPPI RGGWCCY 1 cut(s) 74
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
SatI GCNGC 1 cut(s) 107
Sau3AI GATC 1 cut(s) 133
Sau96I GGNCC 1 cut(s) 74
SchI GAGTC 1 cut(s) 72
SetI ASST 2 cut(s) 39, 76
SfcI CTRYAG 1 cut(s) 69
SfuI TTCGAA 1 cut(s) 98
SinI GGWCC 1 cut(s) 74
SsiI CCGC 2 cut(s) 87, 106
TaqI TCGA 2 cut(s) 54, 98
TaqII GACCGA 1 cut(s) 132
TauI GCSGC 1 cut(s) 109
VpaK11BI GGWCC 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.