Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005652.1

Orthogroup ID

OG0020659

Physical Location & Seq

Genomic Coordinates Reverse (-)

108904 .. 111327

Gene Structure 2424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005652.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

atgagtttggtggtgaaggcgactgaacaagaagtggagccatggctgaggcaggtggagcttcgatctgtaggagcaatggtgattggaggtgtgaaccggtcatcaggtgaggtggcgagagatggtgcgcaccaatctgcaggagcgacaagggctgcggtggtgaagcctgtaatcattggtgatgttgatgatgtttatgtgggtatggtgatgaaggtattcgtgatccgtatggagagtatggctacggaggcaggtaagacggtgaatgtcggcgataagagtgagaggcaacaagtgcatgggattgggggttgtgatgtttcccgggggaattgggttcatgatgattcataccctctttatgaagcttctagctgccccttcattgagaaggagtttgactgtgtaaagaatggtcgcccagacaaggactatctcaaatacagatggcagccacttggctgtaacttaccaaggtatatatcacaccatatttttcttttagcagataatcttatgttgccggactatttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

181

Amino Acids

20.13

Weight (kDa)

5.72

Isoelectric Point (pI)

42.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020659)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000017284
rosa_multiflora	Rmu_sc0005652.1_g000025
rosa_roxburghii	Rroxscaffold_6G00411480
rosa_samantha	Rh3AG153600 Rh3CG168500 Rh3DG197800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc16I	TGCGCA	1 cut(s)	132
Acc36I	ACCTGC	2 cut(s)	43, 251
AciI	CCGC	1 cut(s)	161
AclWI	GGATC	1 cut(s)	226
AfiI	CCNNNNNNNGG	1 cut(s)	436
AgeI	ACCGGT	1 cut(s)	99
AluBI	AGCT	3 cut(s)	61, 377, 384
AluI	AGCT	3 cut(s)	61, 377, 384
AlwI	GGATC	1 cut(s)	226
Ama87I	CYCGRG	1 cut(s)	333
ApeKI	GCWGC	3 cut(s)	158, 384, 460
AsiGI	ACCGGT	1 cut(s)	99
Asp700I	GAANNNNTTC	1 cut(s)	224
AspLEI	GCGC	1 cut(s)	133
AsuC2I	CCSGG	2 cut(s)	334, 335
AsuHPI	GGTGA	7 cut(s)	25, 94, 122, 178, 197, 226, 283
AvaI	CYCGRG	1 cut(s)	333
BbvCI	CCTCAGC	1 cut(s)	47
BbvI	GCAGC	3 cut(s)	145, 371, 472
BccI	CCATC	2 cut(s)	119, 450
BcnI	CCSGG	2 cut(s)	334, 335
BfaI	CTAG	1 cut(s)	381
BfmI	CTRYAG	2 cut(s)	69, 141
BfuAI	ACCTGC	2 cut(s)	43, 251
BisI	GCNGC	3 cut(s)	159, 385, 461
BlsI	GCNGC	3 cut(s)	160, 386, 462
Bme1390I	CCNGG	2 cut(s)	334, 335
BmeT110I	CYCGRG	1 cut(s)	333
BmiI	GGNNCC	1 cut(s)	39
BmrFI	CCNGG	2 cut(s)	334, 335
Bpu10I	CCTNAGC	1 cut(s)	47
BpuMI	CCSGG	2 cut(s)	334, 335
BsaJI	CCNNGG	4 cut(s)	41, 333, 334, 482
BsaWI	WCCGGW	1 cut(s)	99
BsaXI	ACNNNNNCTCC	2 cut(s)	66, 96
Bsc4I	CCNNNNNNNGG	1 cut(s)	436
Bse118I	RCCGGY	1 cut(s)	99
Bse3DI	GCAATG	1 cut(s)	84
BseDI	CCNNGG	4 cut(s)	41, 333, 334, 482
BseLI	CCNNNNNNNGG	1 cut(s)	436
BseMI	GCAATG	1 cut(s)	84
BseMII	CTCAG	1 cut(s)	38
BseXI	GCAGC	3 cut(s)	145, 371, 472
BshTI	ACCGGT	1 cut(s)	99
BsiHKCI	CYCGRG	1 cut(s)	333
BsiSI	CCGG	3 cut(s)	100, 334, 533
BslI	CCNNNNNNNGG	1 cut(s)	436
BsoBI	CYCGRG	1 cut(s)	333
Bsp143I	GATC	2 cut(s)	65, 231
Bsp19I	CCATGG	1 cut(s)	41
BspACI	CCGC	1 cut(s)	161
BspCNI	CTCAG	1 cut(s)	39
BspHI	TCATGA	1 cut(s)	349
BspLI	GGNNCC	1 cut(s)	39
BspMAI	CTGCAG	1 cut(s)	145
BspMI	ACCTGC	2 cut(s)	43, 251
BspPI	GGATC	1 cut(s)	226
BsrDI	GCAATG	1 cut(s)	84
BsrFI	RCCGGY	1 cut(s)	99
BssAI	RCCGGY	1 cut(s)	99
BssECI	CCNNGG	4 cut(s)	41, 333, 334, 482
BssMI	GATC	2 cut(s)	65, 231
BssT1I	CCWWGG	2 cut(s)	41, 482
Bst4CI	ACNGT	2 cut(s)	271, 413
BstAPI	GCANNNNNTGC	1 cut(s)	304
BstDEI	CTNAG	1 cut(s)	47
BstDSI	CCRYGG	1 cut(s)	41
BstHHI	GCGC	1 cut(s)	133
BstKTI	GATC	2 cut(s)	68, 234
BstMBI	GATC	2 cut(s)	65, 231
BstMWI	GCNNNNNNNGC	4 cut(s)	58, 155, 257, 304
BstSCI	CCNGG	2 cut(s)	332, 333
BstSFI	CTRYAG	2 cut(s)	69, 141
BstV1I	GCAGC	3 cut(s)	145, 371, 472
BtgI	CCRYGG	1 cut(s)	41
BveI	ACCTGC	2 cut(s)	43, 251
CciI	TCATGA	1 cut(s)	349
CfoI	GCGC	1 cut(s)	133
Cfr10I	RCCGGY	1 cut(s)	99
Cfr9I	CCCGGG	1 cut(s)	333
CspAI	ACCGGT	1 cut(s)	99
CviAII	CATG	3 cut(s)	42, 308, 350
DdeI	CTNAG	1 cut(s)	47
DpnI	GATC	2 cut(s)	67, 233
DpnII	GATC	2 cut(s)	65, 231
Eco130I	CCWWGG	2 cut(s)	41, 482
Eco88I	CYCGRG	1 cut(s)	333
EcoT14I	CCWWGG	2 cut(s)	41, 482
ErhI	CCWWGG	2 cut(s)	41, 482
FaeI	CATG	3 cut(s)	45, 311, 353
FatI	CATG	3 cut(s)	41, 307, 349
Fnu4HI	GCNGC	3 cut(s)	159, 385, 461
Fsp4HI	GCNGC	3 cut(s)	159, 385, 461
FspAI	RTGCGCAY	1 cut(s)	132
FspBI	CTAG	1 cut(s)	381
FspI	TGCGCA	1 cut(s)	132
GlaI	GCGC	1 cut(s)	132
GluI	GCNGC	3 cut(s)	159, 385, 461
HapII	CCGG	3 cut(s)	100, 334, 533
HhaI	GCGC	1 cut(s)	133
Hin1II	CATG	3 cut(s)	45, 311, 353
Hin6I	GCGC	1 cut(s)	131
HinP1I	GCGC	1 cut(s)	131
HindIII	AAGCTT	1 cut(s)	375
HinfI	GANTC	1 cut(s)	356
HpaII	CCGG	3 cut(s)	100, 334, 533
HphI	GGTGA	7 cut(s)	25, 94, 122, 178, 197, 226, 283
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188III	TCNNGA	2 cut(s)	229, 350
Hpy8I	GTNNAC	1 cut(s)	97
HpyAV	CCTTC	4 cut(s)	10, 214, 394, 400
HpyCH4III	ACNGT	2 cut(s)	271, 413
HpyCH4V	TGCA	2 cut(s)	143, 307
HpyF10VI	GCNNNNNNNGC	4 cut(s)	58, 155, 257, 304
HpyF3I	CTNAG	1 cut(s)	47
Hsp92II	CATG	3 cut(s)	45, 311, 353
HspAI	GCGC	1 cut(s)	131
Kzo9I	GATC	2 cut(s)	65, 231
LmnI	GCTCC	4 cut(s)	37, 58, 74, 146
LpnPI	CCDG	8 cut(s)	38, 93, 113, 129, 186, 246, 347, 444
Lsp1109I	GCAGC	3 cut(s)	145, 371, 472
MaeI	CTAG	1 cut(s)	381
MaeIII	GTNAC	1 cut(s)	473
MalI	GATC	2 cut(s)	67, 233
MboI	GATC	2 cut(s)	65, 231
MluCI	AATT	1 cut(s)	340
MnlI	CCTC	6 cut(s)	42, 83, 106, 250, 288, 375
MroXI	GAANNNNTTC	1 cut(s)	224
MspI	CCGG	3 cut(s)	100, 334, 533
MspR9I	CCNGG	2 cut(s)	334, 335
MwoI	GCNNNNNNNGC	4 cut(s)	58, 155, 257, 304
NciI	CCSGG	2 cut(s)	334, 335
NcoI	CCATGG	1 cut(s)	41
NdeII	GATC	2 cut(s)	65, 231
NlaIII	CATG	3 cut(s)	45, 311, 353
NlaIV	GGNNCC	1 cut(s)	39
NsbI	TGCGCA	1 cut(s)	132
PagI	TCATGA	1 cut(s)	349
PaqCI	CACCTGC	1 cut(s)	43
PdmI	GAANNNNTTC	1 cut(s)	224
PfeI	GAWTC	1 cut(s)	356
PinAI	ACCGGT	1 cut(s)	99
PkrI	GCNGC	3 cut(s)	160, 386, 462
PspN4I	GGNNCC	1 cut(s)	39
PstI	CTGCAG	1 cut(s)	145
SatI	GCNGC	3 cut(s)	159, 385, 461
Sau3AI	GATC	2 cut(s)	65, 231
ScrFI	CCNGG	2 cut(s)	334, 335
SfcI	CTRYAG	2 cut(s)	69, 141
SmaI	CCCGGG	1 cut(s)	335
Sse9I	AATT	1 cut(s)	340
SsiI	CCGC	1 cut(s)	161
SspMI	CTAG	1 cut(s)	381
StyD4I	CCNGG	2 cut(s)	332, 333
StyI	CCWWGG	2 cut(s)	41, 482
TaaI	ACNGT	2 cut(s)	271, 413
TaqI	TCGA	1 cut(s)	64
TasI	AATT	1 cut(s)	340
TfiI	GAWTC	1 cut(s)	356
TseI	GCWGC	3 cut(s)	158, 384, 460
TspDTI	ATGAA	5 cut(s)	233, 338, 348, 382, 387
TspGWI	ACGGA	2 cut(s)	224, 269
TspMI	CCCGGG	1 cut(s)	333
XmaI	CCCGGG	1 cut(s)	333
XmnI	GAANNNNTTC	1 cut(s)	224
XspI	CTAG	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.