Rh3AG153600

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
Physical Location & Seq
Forward (+)
13912604 .. 13912831
228 bp
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UTR
Exon/CDS
Intron
Rh3AG153600.1

Sequence Viewer

Length: 228 bp
ATGGGAGGCGATGAATGGATCACAACCTCTAAGTATGAGTTTGGTGGTGAAGGAGACAGAACTGGAAGTGAAGCCATGGTTGAGGCAGGTGGAGCTTCGATCTGTAGGAGCAATGGTGATTGGCGGGTGAATCGGTCATCAGGTGAGGCGACAAGAGATGGTGCGCACCAATTTGTAGGAGTGACAAGGACTGCGGCGGTGAAGCCTATAATCGTACGACAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

8.0

Weight (kDa)

5.34

Isoelectric Point (pI)

18.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020659)

Species Orthologous Gene IDs
rosa_laevigata RLG00000017284
rosa_multiflora Rmu_sc0005652.1_g000025
rosa_roxburghii Rroxscaffold_6G00411480
rosa_samantha Rh3AG153600 Rh3CG168500 Rh3DG197800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 77
Acc16I TGCGCA 1 cut(s) 165
Acc36I ACCTGC 1 cut(s) 77
AciI CCGC 3 cut(s) 124, 194, 197
AclWI GGATC 1 cut(s) 26
AfaI GTAC 1 cut(s) 216
AluBI AGCT 1 cut(s) 95
AluI AGCT 1 cut(s) 95
Alw26I GTCTC 1 cut(s) 48
AlwI GGATC 1 cut(s) 26
AspLEI GCGC 1 cut(s) 166
AsuHPI GGTGA 5 cut(s) 59, 128, 139, 155, 211
BccI CCATC 1 cut(s) 152
BcoDI GTCTC 1 cut(s) 48
BfmI CTRYAG 1 cut(s) 103
BfuAI ACCTGC 1 cut(s) 77
BisI GCNGC 1 cut(s) 195
BlsI GCNGC 1 cut(s) 196
BsaJI CCNNGG 1 cut(s) 75
BsaXI ACNNNNNCTCC 2 cut(s) 100, 130
Bse1I ACTGG 1 cut(s) 67
Bse3DI GCAATG 1 cut(s) 118
BseDI CCNNGG 1 cut(s) 75
BseMI GCAATG 1 cut(s) 118
BseNI ACTGG 1 cut(s) 67
BsiWI CGTACG 1 cut(s) 214
BsmAI GTCTC 1 cut(s) 48
Bsp143I GATC 2 cut(s) 18, 99
Bsp19I CCATGG 1 cut(s) 75
BspACI CCGC 3 cut(s) 124, 194, 197
BspMI ACCTGC 1 cut(s) 77
BspPI GGATC 1 cut(s) 26
BsrDI GCAATG 1 cut(s) 118
BsrI ACTGG 1 cut(s) 67
BssECI CCNNGG 1 cut(s) 75
BssMI GATC 2 cut(s) 18, 99
BssT1I CCWWGG 1 cut(s) 75
BstDEI CTNAG 1 cut(s) 30
BstDSI CCRYGG 1 cut(s) 75
BstHHI GCGC 1 cut(s) 166
BstKTI GATC 2 cut(s) 21, 102
BstMAI GTCTC 1 cut(s) 48
BstMBI GATC 2 cut(s) 18, 99
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstSFI CTRYAG 1 cut(s) 103
BtgI CCRYGG 1 cut(s) 75
BtgZI GCGATG 1 cut(s) 24
BveI ACCTGC 1 cut(s) 77
CfoI GCGC 1 cut(s) 166
Csp6I GTAC 1 cut(s) 215
CviAII CATG 1 cut(s) 76
CviJI RGCY 3 cut(s) 74, 95, 205
CviKI_1 RGCY 3 cut(s) 74, 95, 205
CviQI GTAC 1 cut(s) 215
DdeI CTNAG 1 cut(s) 30
DpnI GATC 2 cut(s) 20, 101
DpnII GATC 2 cut(s) 18, 99
Eco130I CCWWGG 1 cut(s) 75
EcoT14I CCWWGG 1 cut(s) 75
ErhI CCWWGG 1 cut(s) 75
FaeI CATG 1 cut(s) 79
FaiI YATR 3 cut(s) 36, 77, 209
FatI CATG 1 cut(s) 75
FauI CCCGC 1 cut(s) 117
Fnu4HI GCNGC 1 cut(s) 195
Fsp4HI GCNGC 1 cut(s) 195
FspAI RTGCGCAY 1 cut(s) 165
FspI TGCGCA 1 cut(s) 165
GlaI GCGC 1 cut(s) 165
GluI GCNGC 1 cut(s) 195
HhaI GCGC 1 cut(s) 166
Hin1II CATG 1 cut(s) 79
Hin6I GCGC 1 cut(s) 164
HinP1I GCGC 1 cut(s) 164
HinfI GANTC 1 cut(s) 130
HphI GGTGA 5 cut(s) 59, 128, 139, 155, 211
HpyAV CCTTC 1 cut(s) 44
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 1 cut(s) 30
Hsp92II CATG 1 cut(s) 79
HspAI GCGC 1 cut(s) 164
Kzo9I GATC 2 cut(s) 18, 99
LmnI GCTCC 2 cut(s) 92, 108
LpnPI CCDG 3 cut(s) 48, 72, 126
MaeIII GTNAC 1 cut(s) 181
MalI GATC 2 cut(s) 20, 101
MboI GATC 2 cut(s) 18, 99
MluCI AATT 1 cut(s) 170
MnlI CCTC 3 cut(s) 37, 76, 139
MwoI GCNNNNNNNGC 1 cut(s) 92
NcoI CCATGG 1 cut(s) 75
NdeII GATC 2 cut(s) 18, 99
NlaIII CATG 1 cut(s) 79
NmuCI GTSAC 1 cut(s) 181
NsbI TGCGCA 1 cut(s) 165
PaqCI CACCTGC 1 cut(s) 77
PfeI GAWTC 1 cut(s) 130
Pfl23II CGTACG 1 cut(s) 214
PkrI GCNGC 1 cut(s) 196
PspLI CGTACG 1 cut(s) 214
RsaI GTAC 1 cut(s) 216
RsaNI GTAC 1 cut(s) 215
SatI GCNGC 1 cut(s) 195
Sau3AI GATC 2 cut(s) 18, 99
SetI ASST 4 cut(s) 29, 91, 97, 145
SfcI CTRYAG 1 cut(s) 103
SgeI CNNG 7 cut(s) 75, 88, 99, 137, 153, 165, 198
Sse9I AATT 1 cut(s) 170
SsiI CCGC 3 cut(s) 124, 194, 197
StyI CCWWGG 1 cut(s) 75
TaqI TCGA 1 cut(s) 98
TaqII GACCGA 1 cut(s) 123
TasI AATT 1 cut(s) 170
TauI GCSGC 1 cut(s) 197
TfiI GAWTC 1 cut(s) 130
TseFI GTSAC 1 cut(s) 181
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.