Rh3DG197800

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Reverse (-)
17777149 .. 17786484
9336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG197800.1

Sequence Viewer

Length: 234 bp
ATGGTGATTGGCGGTGTGAATCGATCATCAGGTGAGGCGACAAGAGATGGTGCGCACCAATTTGTAGGAGCGACAAGGGCTGTGGCGGTGAAGCCTATAATCGTTGGTGATGTTGATGATGTTTTTGTGGGTACGGCGAAGAAGGTATCCGTGATCCGTGATCCGTATAGAGAGTATGGCTATGGAGGCAGAAAAGGAAAGCTCAGAGCCTTAGAGGAAGGATTGGATATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

8.19

Weight (kDa)

9.15

Isoelectric Point (pI)

4.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0020659)

Species Orthologous Gene IDs
rosa_laevigata RLG00000017284
rosa_multiflora Rmu_sc0005652.1_g000025
rosa_roxburghii Rroxscaffold_6G00411480
rosa_samantha Rh3AG153600 Rh3CG168500 Rh3DG197800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 54
AciI CCGC 2 cut(s) 12, 86
AclWI GGATC 2 cut(s) 148, 155
AfaI GTAC 1 cut(s) 133
AluBI AGCT 1 cut(s) 202
AluI AGCT 1 cut(s) 202
AlwI GGATC 2 cut(s) 148, 155
AspLEI GCGC 1 cut(s) 55
AsuHPI GGTGA 4 cut(s) 16, 44, 100, 119
BccI CCATC 1 cut(s) 41
BceAI ACGGC 1 cut(s) 150
BciVI GTATCC 1 cut(s) 157
BfuI GTATCC 1 cut(s) 157
Bsa29I ATCGAT 1 cut(s) 22
BseCI ATCGAT 1 cut(s) 22
BseMII CTCAG 1 cut(s) 217
BshVI ATCGAT 1 cut(s) 22
Bsp143I GATC 3 cut(s) 23, 153, 160
BspACI CCGC 2 cut(s) 12, 86
BspCNI CTCAG 1 cut(s) 216
BspDI ATCGAT 1 cut(s) 22
BspPI GGATC 2 cut(s) 148, 155
BssMI GATC 3 cut(s) 23, 153, 160
BstDEI CTNAG 2 cut(s) 203, 211
BstHHI GCGC 1 cut(s) 55
BstKTI GATC 3 cut(s) 26, 156, 163
BstMBI GATC 3 cut(s) 23, 153, 160
BstMWI GCNNNNNNNGC 2 cut(s) 77, 186
Bsu15I ATCGAT 1 cut(s) 22
BsuI GTATCC 1 cut(s) 157
BsuTUI ATCGAT 1 cut(s) 22
CfoI GCGC 1 cut(s) 55
ClaI ATCGAT 1 cut(s) 22
Csp6I GTAC 1 cut(s) 132
CspCI CAANNNNNGTGG 2 cut(s) 63, 98
CviJI RGCY 5 cut(s) 80, 94, 180, 202, 209
CviKI_1 RGCY 5 cut(s) 80, 94, 180, 202, 209
CviQI GTAC 1 cut(s) 132
DdeI CTNAG 2 cut(s) 203, 211
DpnI GATC 3 cut(s) 25, 155, 162
DpnII GATC 3 cut(s) 23, 153, 160
Eco32I GATATC 1 cut(s) 229
EcoRV GATATC 1 cut(s) 229
FaiI YATR 4 cut(s) 98, 168, 177, 183
FspAI RTGCGCAY 1 cut(s) 54
FspI TGCGCA 1 cut(s) 54
GlaI GCGC 1 cut(s) 54
HhaI GCGC 1 cut(s) 55
Hin6I GCGC 1 cut(s) 53
HinP1I GCGC 1 cut(s) 53
HinfI GANTC 1 cut(s) 19
HphI GGTGA 4 cut(s) 16, 44, 100, 119
Hpy188I TCNGA 2 cut(s) 206, 233
HpyAV CCTTC 2 cut(s) 136, 212
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 186
HpyF3I CTNAG 2 cut(s) 203, 211
HspAI GCGC 1 cut(s) 53
Kzo9I GATC 3 cut(s) 23, 153, 160
LmnI GCTCC 1 cut(s) 68
LpnPI CCDG 1 cut(s) 15
MalI GATC 3 cut(s) 25, 155, 162
MboI GATC 3 cut(s) 23, 153, 160
MboII GAAGA 1 cut(s) 151
MluCI AATT 1 cut(s) 59
MnlI CCTC 3 cut(s) 28, 179, 208
MwoI GCNNNNNNNGC 2 cut(s) 77, 186
NdeII GATC 3 cut(s) 23, 153, 160
NsbI TGCGCA 1 cut(s) 54
PfeI GAWTC 1 cut(s) 19
RsaI GTAC 1 cut(s) 133
RsaNI GTAC 1 cut(s) 132
Sau3AI GATC 3 cut(s) 23, 153, 160
SetI ASST 3 cut(s) 34, 147, 204
SgeI CNNG 5 cut(s) 42, 54, 87, 163, 170
Sse9I AATT 1 cut(s) 59
SsiI CCGC 2 cut(s) 12, 86
TaqI TCGA 1 cut(s) 22
TasI AATT 1 cut(s) 59
TfiI GAWTC 1 cut(s) 19
TspGWI ACGGA 3 cut(s) 139, 146, 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.