Rmu_sc0005776.1_g000003
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005776.1
OG0020749
Physical Location & Seq
Forward (+)
13407 .. 14363
957 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005776.1_g000003.1.cds

Sequence Viewer

Length: 888 bp
atgcagcaagagtttgcaatggaagagagcggaggcaatcaacttcctggagtgaggttctgccccatggaggacgaactagttctcttctaccttaagcccctcttgagtggagagaaggtgcccggcagaaacagcgtggtgttcgactgcgacctctacggtcaccaagaaccttgggagatatgggagggtggaagagagcggaggcaatcaacttcctggagtgcccggcagaaacagagtggtgttcgactgcgacctctacggtcgccaagaaccttgggagatatgggaggcctacaagaccagaagaccaaacgacttgaggctcaacaaggacatctacttcttcacccaacacaagaagatgagttccacagactcgcgcatacgccggaccgttggaaatggcacctggaagggcgacgactccggcaagccagtaaaatctttggagactggtcgtgtggttggcttgaagaaaagacttacttacaagaacaaagcatcggtgcaatggtagaaatggaagacctgctagctgttaatggtgcgactagtaatatggaaatggcggaagaaaacgtgctaaacaatacccttcttcacactcccgcatcatccttgtctgcggcctatgatggcattgatatgccatatttatccatggaaaatggttgcactgattcagctggaagcaacaatgtttgtggaggatcgattggctttcaggatggtgcatattggcctgagtctttagtggaggtccttgctgaagagcaacaaaagaaagctgatggagattgttcagattggttggagtcgatcagttttagtcctgaggaaaacaacttcctttggagtgaagtgcaatggtgtttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

295

Amino Acids

33.45

Weight (kDa)

4.69

Isoelectric Point (pI)

61.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020749)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0005776.1_g000003
rosa_roxburghii Rroxscaffold_3G00225370
rosa_rugosa Rorug06G0064200 Rorug07G0297500
rosa_samantha Rh7AG293600 Rh7AG451900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 546
AccB1I GGYRCC 2 cut(s) 121, 414
AccBSI CCGCTC 2 cut(s) 30, 205
AccII CGCG 1 cut(s) 389
AciI CCGC 5 cut(s) 30, 205, 578, 618, 635
AclWI GGATC 1 cut(s) 727
AcuI CTGAAG 1 cut(s) 798
AfiI CCNNNNNNNGG 1 cut(s) 70
AflII CTTAAG 1 cut(s) 95
AgsI TTSAA 1 cut(s) 482
AhlI ACTAGT 2 cut(s) 79, 560
AjnI CCWGG 3 cut(s) 46, 221, 417
AluBI AGCT 3 cut(s) 545, 695, 797
AluI AGCT 3 cut(s) 545, 695, 797
Alw26I GTCTC 1 cut(s) 453
AlwI GGATC 1 cut(s) 727
AoxI GGCC 3 cut(s) 298, 636, 749
ApeKI GCWGC 1 cut(s) 4
Asp700I GAANNNNTTC 1 cut(s) 81
AspLEI GCGC 1 cut(s) 391
AspS9I GGNCC 2 cut(s) 400, 769
AsuC2I CCSGG 2 cut(s) 126, 232
AsuHPI GGTGA 2 cut(s) 158, 347
AsuNHI GCTAGC 1 cut(s) 541
AvaII GGWCC 2 cut(s) 400, 769
AxyI CCTNAGG 1 cut(s) 843
BaeGI GKGCMC 2 cut(s) 126, 232
BanI GGYRCC 2 cut(s) 121, 414
BbsI GAAGAC 2 cut(s) 320, 540
BbvI GCAGC 1 cut(s) 16
BccI CCATC 3 cut(s) 638, 731, 794
BciT130I CCWGG 3 cut(s) 48, 223, 419
BcnI CCSGG 2 cut(s) 126, 232
BcoDI GTCTC 1 cut(s) 453
BcuI ACTAGT 2 cut(s) 79, 560
BfaI CTAG 3 cut(s) 80, 542, 561
BfrI CTTAAG 1 cut(s) 95
BfuAI ACCTGC 1 cut(s) 546
BisI GCNGC 2 cut(s) 5, 636
BlsI GCNGC 2 cut(s) 6, 637
Bme1390I CCNGG 5 cut(s) 48, 126, 223, 232, 419
Bme18I GGWCC 2 cut(s) 400, 769
BmgT120I GGNCC 2 cut(s) 400, 769
BmiI GGNNCC 2 cut(s) 123, 416
BmrFI CCNGG 5 cut(s) 48, 126, 223, 232, 419
BmsI GCATC 2 cut(s) 519, 629
BmtI GCTAGC 1 cut(s) 545
BpiI GAAGAC 2 cut(s) 320, 540
BpmI CTGGAG 2 cut(s) 69, 244
BpuEI CTTGAG 2 cut(s) 127, 347
BpuMI CCSGG 2 cut(s) 126, 232
Bsa29I ATCGAT 1 cut(s) 722
BsaJI CCNNGG 4 cut(s) 66, 176, 282, 669
BsaXI ACNNNNNCTCC 2 cut(s) 105, 135
Bsc4I CCNNNNNNNGG 1 cut(s) 70
Bse1I ACTGG 2 cut(s) 444, 467
Bse21I CCTNAGG 1 cut(s) 843
Bse3DI GCAATG 3 cut(s) 24, 525, 881
BseBI CCWGG 3 cut(s) 48, 223, 419
BseCI ATCGAT 1 cut(s) 722
BseDI CCNNGG 4 cut(s) 66, 176, 282, 669
BseGI GGATG 2 cut(s) 623, 742
BseLI CCNNNNNNNGG 1 cut(s) 70
BseMI GCAATG 3 cut(s) 24, 525, 881
BseMII CTCAG 2 cut(s) 744, 834
BseNI ACTGG 2 cut(s) 444, 467
BseSI GKGCMC 2 cut(s) 126, 232
BseXI GCAGC 1 cut(s) 16
Bsh1236I CGCG 1 cut(s) 389
Bsh1285I CGRYCG 1 cut(s) 272
BshFI GGCC 3 cut(s) 300, 638, 751
BshNI GGYRCC 2 cut(s) 121, 414
BshVI ATCGAT 1 cut(s) 722
BsiEI CGRYCG 1 cut(s) 272
BsiSI CCGG 4 cut(s) 126, 232, 398, 436
BslI CCNNNNNNNGG 1 cut(s) 70
BsmAI GTCTC 1 cut(s) 453
BsnI GGCC 3 cut(s) 300, 638, 751
Bsp1286I GDGCHC 2 cut(s) 126, 232
Bsp143I GATC 2 cut(s) 719, 828
Bsp19I CCATGG 2 cut(s) 66, 669
BspACI CCGC 5 cut(s) 30, 205, 578, 618, 635
BspANI GGCC 3 cut(s) 300, 638, 751
BspCNI CTCAG 2 cut(s) 745, 835
BspDI ATCGAT 1 cut(s) 722
BspFNI CGCG 1 cut(s) 389
BspLI GGNNCC 2 cut(s) 123, 416
BspMI ACCTGC 1 cut(s) 546
BspOI GCTAGC 1 cut(s) 545
BspPI GGATC 1 cut(s) 727
BspQI GCTCTTC 1 cut(s) 774
BspT107I GGYRCC 2 cut(s) 121, 414
BspTI CTTAAG 1 cut(s) 95
BsrBI CCGCTC 2 cut(s) 30, 205
BsrDI GCAATG 3 cut(s) 24, 525, 881
BsrI ACTGG 2 cut(s) 444, 467
BssECI CCNNGG 4 cut(s) 66, 176, 282, 669
BssMI GATC 2 cut(s) 719, 828
BssT1I CCWWGG 4 cut(s) 66, 176, 282, 669
Bst2UI CCWGG 3 cut(s) 48, 223, 419
Bst4CI ACNGT 3 cut(s) 164, 270, 404
Bst6I CTCTTC 4 cut(s) 18, 92, 193, 774
BstAFI CTTAAG 1 cut(s) 95
BstC8I GCNNGC 2 cut(s) 441, 543
BstDEI CTNAG 2 cut(s) 753, 843
BstDSI CCRYGG 2 cut(s) 66, 669
BstEII GGTNACC 1 cut(s) 164
BstF5I GGATG 2 cut(s) 623, 742
BstFNI CGCG 1 cut(s) 389
BstHHI GCGC 1 cut(s) 391
BstKTI GATC 2 cut(s) 722, 831
BstMAI GTCTC 1 cut(s) 453
BstMBI GATC 2 cut(s) 719, 828
BstMCI CGRYCG 1 cut(s) 272
BstMWI GCNNNNNNNGC 1 cut(s) 135
BstNI CCWGG 3 cut(s) 48, 223, 419
BstPI GGTNACC 1 cut(s) 164
BstSCI CCNGG 5 cut(s) 46, 124, 221, 230, 417
BstSLI GKGCMC 2 cut(s) 126, 232
BstUI CGCG 1 cut(s) 389
BstV1I GCAGC 1 cut(s) 16
BstV2I GAAGAC 2 cut(s) 320, 540
Bsu15I ATCGAT 1 cut(s) 722
Bsu36I CCTNAGG 1 cut(s) 843
BsuRI GGCC 3 cut(s) 300, 638, 751
BsuTUI ATCGAT 1 cut(s) 722
BtgI CCRYGG 2 cut(s) 66, 669
BtsCI GGATG 2 cut(s) 623, 742
BtsIMutI CAGTG 1 cut(s) 684
BveI ACCTGC 1 cut(s) 546
Cac8I GCNNGC 2 cut(s) 441, 543
CfoI GCGC 1 cut(s) 391
Cfr13I GGNCC 2 cut(s) 400, 769
ClaI ATCGAT 1 cut(s) 722
CpoI CGGWCCG 1 cut(s) 400
CspCI CAANNNNNGTGG 2 cut(s) 694, 729
CspI CGGWCCG 1 cut(s) 400
CviAII CATG 2 cut(s) 67, 670
DdeI CTNAG 2 cut(s) 753, 843
DpnI GATC 2 cut(s) 721, 830
DpnII GATC 2 cut(s) 719, 828
Eam1104I CTCTTC 4 cut(s) 18, 92, 193, 774
EarI CTCTTC 4 cut(s) 18, 92, 193, 774
EciI GGCGGA 1 cut(s) 593
Eco130I CCWWGG 4 cut(s) 66, 176, 282, 669
Eco147I AGGCCT 1 cut(s) 300
Eco47I GGWCC 2 cut(s) 400, 769
Eco57I CTGAAG 1 cut(s) 798
Eco81I CCTNAGG 1 cut(s) 843
Eco91I GGTNACC 1 cut(s) 164
EcoO109I RGGNCCY 1 cut(s) 769
EcoO65I GGTNACC 1 cut(s) 164
EcoRII CCWGG 3 cut(s) 46, 221, 417
EcoT14I CCWWGG 4 cut(s) 66, 176, 282, 669
ErhI CCWWGG 4 cut(s) 66, 176, 282, 669
FaeI CATG 2 cut(s) 70, 673
FalI AAGNNNNNCTT 4 cut(s) 89, 121, 479, 511
FatI CATG 2 cut(s) 66, 669
FauI CCCGC 1 cut(s) 625
Fnu4HI GCNGC 2 cut(s) 5, 636
FokI GGATG 2 cut(s) 610, 749
Fsp4HI GCNGC 2 cut(s) 5, 636
FspBI CTAG 3 cut(s) 80, 542, 561
GlaI GCGC 1 cut(s) 390
GluI GCNGC 2 cut(s) 5, 636
GsuI CTGGAG 2 cut(s) 69, 244
HaeIII GGCC 3 cut(s) 300, 638, 751
HapII CCGG 4 cut(s) 126, 232, 398, 436
HhaI GCGC 1 cut(s) 391
Hin1II CATG 2 cut(s) 70, 673
Hin6I GCGC 1 cut(s) 389
HinP1I GCGC 1 cut(s) 389
HinfI GANTC 5 cut(s) 384, 432, 689, 755, 824
HpaII CCGG 4 cut(s) 126, 232, 398, 436
HphI GGTGA 2 cut(s) 158, 347
Hpy188I TCNGA 1 cut(s) 814
Hpy188III TCNNGA 3 cut(s) 106, 734, 842
Hpy99I CGWCG 1 cut(s) 432
HpyAV CCTTC 3 cut(s) 112, 416, 614
HpyCH4III ACNGT 3 cut(s) 164, 270, 404
HpyCH4IV ACGT 1 cut(s) 588
HpyCH4V TGCA 6 cut(s) 4, 17, 518, 684, 743, 874
HpyF10VI GCNNNNNNNGC 1 cut(s) 135
HpyF3I CTNAG 2 cut(s) 753, 843
HpySE526I ACGT 1 cut(s) 588
Hsp92II CATG 2 cut(s) 70, 673
HspAI GCGC 1 cut(s) 389
Kzo9I GATC 2 cut(s) 719, 828
LguI GCTCTTC 1 cut(s) 774
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 2 cut(s) 519, 629
MaeI CTAG 3 cut(s) 80, 542, 561
MaeII ACGT 1 cut(s) 588
MaeIII GTNAC 1 cut(s) 164
MalI GATC 2 cut(s) 721, 830
MbiI CCGCTC 2 cut(s) 30, 205
MboI GATC 2 cut(s) 719, 828
MhlI GDGCHC 2 cut(s) 126, 232
MlyI GAGTC 4 cut(s) 378, 426, 764, 833
MmeI TCCRAC 2 cut(s) 386, 801
MroXI GAANNNNTTC 1 cut(s) 81
MseI TTAA 2 cut(s) 96, 549
MslI CAYNNNNRTG 1 cut(s) 653
MspA1I CMGCKG 1 cut(s) 695
MspCI CTTAAG 1 cut(s) 95
MspI CCGG 4 cut(s) 126, 232, 398, 436
MspR9I CCNGG 5 cut(s) 48, 126, 223, 232, 419
MvaI CCWGG 3 cut(s) 48, 223, 419
MvnI CGCG 1 cut(s) 389
MwoI GCNNNNNNNGC 1 cut(s) 135
NciI CCSGG 2 cut(s) 126, 232
NcoI CCATGG 2 cut(s) 66, 669
NdeII GATC 2 cut(s) 719, 828
NheI GCTAGC 1 cut(s) 541
NlaIII CATG 2 cut(s) 70, 673
NlaIV GGNNCC 2 cut(s) 123, 416
NmuCI GTSAC 1 cut(s) 164
PceI AGGCCT 1 cut(s) 300
PciSI GCTCTTC 1 cut(s) 774
PdmI GAANNNNTTC 1 cut(s) 81
PfeI GAWTC 1 cut(s) 689
PfoI TCCNGGA 2 cut(s) 46, 221
PkrI GCNGC 2 cut(s) 6, 637
PleI GAGTC 4 cut(s) 378, 426, 763, 832
PpsI GAGTC 4 cut(s) 378, 426, 763, 832
PpuMI RGGWCCY 1 cut(s) 769
Psp5II RGGWCCY 1 cut(s) 769
Psp6I CCWGG 3 cut(s) 46, 221, 417
PspEI GGTNACC 1 cut(s) 164
PspGI CCWGG 3 cut(s) 46, 221, 417
PspN4I GGNNCC 2 cut(s) 123, 416
PspPI GGNCC 2 cut(s) 400, 769
PspPPI RGGWCCY 1 cut(s) 769
PvuII CAGCTG 1 cut(s) 695
RseI CAYNNNNRTG 1 cut(s) 653
Rsr2I CGGWCCG 1 cut(s) 400
RsrII CGGWCCG 1 cut(s) 400
SapI GCTCTTC 1 cut(s) 774
SaqAI TTAA 2 cut(s) 96, 549
SatI GCNGC 2 cut(s) 5, 636
Sau3AI GATC 2 cut(s) 719, 828
Sau96I GGNCC 2 cut(s) 400, 769
SchI GAGTC 4 cut(s) 378, 426, 764, 833
ScrFI CCNGG 5 cut(s) 48, 126, 223, 232, 419
SduI GDGCHC 2 cut(s) 126, 232
SfaNI GCATC 2 cut(s) 519, 629
SinI GGWCC 2 cut(s) 400, 769
SmiMI CAYNNNNRTG 1 cut(s) 653
SmlI CTYRAG 3 cut(s) 95, 106, 326
SmoI CTYRAG 3 cut(s) 95, 106, 326
SpeI ACTAGT 2 cut(s) 79, 560
SseBI AGGCCT 1 cut(s) 300
SsiI CCGC 5 cut(s) 30, 205, 578, 618, 635
SspMI CTAG 3 cut(s) 80, 542, 561
StuI AGGCCT 1 cut(s) 300
StyD4I CCNGG 5 cut(s) 46, 124, 221, 230, 417
StyI CCWWGG 4 cut(s) 66, 176, 282, 669
TaaI ACNGT 3 cut(s) 164, 270, 404
TaiI ACGT 1 cut(s) 591
TaqI TCGA 4 cut(s) 147, 253, 722, 827
TauI GCSGC 1 cut(s) 638
TfiI GAWTC 1 cut(s) 689
Tru1I TTAA 2 cut(s) 96, 549
Tru9I TTAA 2 cut(s) 96, 549
TscAI CASTG 1 cut(s) 691
TseFI GTSAC 1 cut(s) 164
TseI GCWGC 1 cut(s) 4
Tsp45I GTSAC 1 cut(s) 164
TspRI CASTG 1 cut(s) 691
Vha464I CTTAAG 1 cut(s) 95
VpaK11BI GGWCC 2 cut(s) 400, 769
XmnI GAANNNNTTC 1 cut(s) 81
XspI CTAG 3 cut(s) 80, 542, 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.