Rroxscaffold_3G00225370

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0020749
Physical Location & Seq
Forward (+)
8632295 .. 8633726
1432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00225370.1

Sequence Viewer

Length: 417 bp
ATGTCTCCGGCCTATGATGGCACTGATATGCCATATTTATCCTTGGAAAATTGTTGCACTGATTCAGCTGGAAGCAACAATGTTTGTGGAGGATCGATTGGCTTTCAAGATGGTGCGTACTGGCCTGAGTCTATAGTGAAGGCCCCAACTGAAGAGCAACAAAAGACAGCTGATGGAGATTGTTCAAATTGGTTGGAGTCGATCAGTTTTAGTCCTGAGGAAAACTACTTCCTTTGGAGTGAAGTGGGAGAGATGCGGTTGCAGGATGGACATGGCTGGCTTGTTCAAAAAGGTGGGAGAGTTGCTTTCCTTACCAATGTGCTCGAGCTTCTTACTCTCCCGGAGGCAAAAGAACCGGGGAGGCCTGCCTGTGCTTTTCTTTTTCATACTGAAAAAAATTGTCATGGCATGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

15.19

Weight (kDa)

4.5

Isoelectric Point (pI)

61.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020749)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0005776.1_g000003
rosa_roxburghii Rroxscaffold_3G00225370
rosa_rugosa Rorug06G0064200 Rorug07G0297500
rosa_samantha Rh7AG293600 Rh7AG451900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 256
AclWI GGATC 1 cut(s) 100
AcuI CTGAAG 1 cut(s) 171
AfaI GTAC 1 cut(s) 119
AgsI TTSAA 3 cut(s) 107, 186, 287
AluBI AGCT 3 cut(s) 68, 170, 328
AluI AGCT 3 cut(s) 68, 170, 328
Alw21I GWGCWC 1 cut(s) 324
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 1 cut(s) 100
Ama87I CYCGRG 1 cut(s) 323
AoxI GGCC 4 cut(s) 9, 122, 141, 362
AspS9I GGNCC 1 cut(s) 142
AsuC2I CCSGG 2 cut(s) 341, 357
AvaI CYCGRG 1 cut(s) 323
AxyI CCTNAGG 1 cut(s) 216
Bbv12I GWGCWC 1 cut(s) 324
BccI CCATC 4 cut(s) 11, 104, 167, 260
BcnI CCSGG 2 cut(s) 341, 357
BcoDI GTCTC 1 cut(s) 9
BfmI CTRYAG 1 cut(s) 132
Bme1390I CCNGG 2 cut(s) 341, 357
BmeT110I CYCGRG 1 cut(s) 323
BmgT120I GGNCC 1 cut(s) 142
BmiI GGNNCC 1 cut(s) 144
BmrFI CCNGG 2 cut(s) 341, 357
BmsI GCATC 1 cut(s) 243
BpuMI CCSGG 2 cut(s) 341, 357
Bsa29I ATCGAT 1 cut(s) 95
BsaJI CCNNGG 2 cut(s) 42, 356
Bse1I ACTGG 1 cut(s) 125
Bse21I CCTNAGG 1 cut(s) 216
BseCI ATCGAT 1 cut(s) 95
BseDI CCNNGG 2 cut(s) 42, 356
BseGI GGATG 1 cut(s) 271
BseMII CTCAG 2 cut(s) 117, 207
BseNI ACTGG 1 cut(s) 125
BshFI GGCC 4 cut(s) 11, 124, 143, 364
BshVI ATCGAT 1 cut(s) 95
BsiHKAI GWGCWC 1 cut(s) 324
BsiHKCI CYCGRG 1 cut(s) 323
BsiSI CCGG 3 cut(s) 8, 341, 356
BsmAI GTCTC 1 cut(s) 9
BsnI GGCC 4 cut(s) 11, 124, 143, 364
BsoBI CYCGRG 1 cut(s) 323
Bsp1286I GDGCHC 1 cut(s) 324
Bsp143I GATC 2 cut(s) 92, 201
BspACI CCGC 1 cut(s) 256
BspANI GGCC 4 cut(s) 11, 124, 143, 364
BspCNI CTCAG 2 cut(s) 118, 208
BspDI ATCGAT 1 cut(s) 95
BspLI GGNNCC 1 cut(s) 144
BspPI GGATC 1 cut(s) 100
BspQI GCTCTTC 1 cut(s) 147
BsrI ACTGG 1 cut(s) 125
BssECI CCNNGG 2 cut(s) 42, 356
BssMI GATC 2 cut(s) 92, 201
BssT1I CCWWGG 1 cut(s) 42
Bst6I CTCTTC 1 cut(s) 147
BstC8I GCNNGC 2 cut(s) 278, 366
BstDEI CTNAG 2 cut(s) 126, 216
BstF5I GGATG 1 cut(s) 271
BstKTI GATC 2 cut(s) 95, 204
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 2 cut(s) 92, 201
BstSCI CCNGG 2 cut(s) 339, 355
BstSFI CTRYAG 1 cut(s) 132
Bsu15I ATCGAT 1 cut(s) 95
Bsu36I CCTNAGG 1 cut(s) 216
BsuRI GGCC 4 cut(s) 11, 124, 143, 364
BsuTUI ATCGAT 1 cut(s) 95
BtsCI GGATG 1 cut(s) 271
BtsIMutI CAGTG 2 cut(s) 21, 57
Cac8I GCNNGC 2 cut(s) 278, 366
Cfr13I GGNCC 1 cut(s) 142
ClaI ATCGAT 1 cut(s) 95
Csp6I GTAC 1 cut(s) 118
CspCI CAANNNNNGTGG 2 cut(s) 67, 102
CviAII CATG 3 cut(s) 272, 404, 409
CviQI GTAC 1 cut(s) 118
DdeI CTNAG 2 cut(s) 126, 216
DpnI GATC 2 cut(s) 94, 203
DpnII GATC 2 cut(s) 92, 201
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
Eco130I CCWWGG 1 cut(s) 42
Eco147I AGGCCT 1 cut(s) 364
Eco57I CTGAAG 1 cut(s) 171
Eco81I CCTNAGG 1 cut(s) 216
Eco88I CYCGRG 1 cut(s) 323
EcoO109I RGGNCCY 1 cut(s) 142
EcoT14I CCWWGG 1 cut(s) 42
ErhI CCWWGG 1 cut(s) 42
FaeI CATG 3 cut(s) 275, 407, 412
FaiI YATR 8 cut(s) 15, 29, 34, 134, 273, 387, 405, 410
FatI CATG 3 cut(s) 271, 403, 408
FokI GGATG 1 cut(s) 278
HaeIII GGCC 4 cut(s) 11, 124, 143, 364
HapII CCGG 3 cut(s) 8, 341, 356
Hin1II CATG 3 cut(s) 275, 407, 412
HinfI GANTC 3 cut(s) 62, 128, 197
HpaII CCGG 3 cut(s) 8, 341, 356
Hpy188III TCNNGA 2 cut(s) 107, 215
HpyAV CCTTC 1 cut(s) 133
HpyCH4V TGCA 2 cut(s) 57, 262
HpyF3I CTNAG 2 cut(s) 126, 216
Hsp92II CATG 3 cut(s) 275, 407, 412
Kzo9I GATC 2 cut(s) 92, 201
LguI GCTCTTC 1 cut(s) 147
LweI GCATC 1 cut(s) 243
MalI GATC 2 cut(s) 94, 203
MboI GATC 2 cut(s) 92, 201
MboII GAAGA 1 cut(s) 164
MhlI GDGCHC 1 cut(s) 324
MluCI AATT 3 cut(s) 49, 187, 397
MlyI GAGTC 2 cut(s) 137, 206
MmeI TCCRAC 1 cut(s) 174
MnlI CCTC 4 cut(s) 83, 211, 337, 354
MslI CAYNNNNRTG 1 cut(s) 26
MspA1I CMGCKG 2 cut(s) 68, 170
MspI CCGG 3 cut(s) 8, 341, 356
MspR9I CCNGG 2 cut(s) 341, 357
NciI CCSGG 2 cut(s) 341, 357
NdeII GATC 2 cut(s) 92, 201
NlaIII CATG 3 cut(s) 275, 407, 412
NlaIV GGNNCC 1 cut(s) 144
PaeR7I CTCGAG 1 cut(s) 323
PceI AGGCCT 1 cut(s) 364
PciSI GCTCTTC 1 cut(s) 147
PfeI GAWTC 1 cut(s) 62
PfoI TCCNGGA 1 cut(s) 339
PleI GAGTC 2 cut(s) 136, 205
PpsI GAGTC 2 cut(s) 136, 205
PspN4I GGNNCC 1 cut(s) 144
PspPI GGNCC 1 cut(s) 142
PspXI VCTCGAGB 1 cut(s) 323
PvuII CAGCTG 2 cut(s) 68, 170
RsaI GTAC 1 cut(s) 119
RsaNI GTAC 1 cut(s) 118
RseI CAYNNNNRTG 1 cut(s) 26
SapI GCTCTTC 1 cut(s) 147
Sau3AI GATC 2 cut(s) 92, 201
Sau96I GGNCC 1 cut(s) 142
SchI GAGTC 2 cut(s) 137, 206
ScrFI CCNGG 2 cut(s) 341, 357
SduI GDGCHC 1 cut(s) 324
SetI ASST 4 cut(s) 70, 172, 295, 330
SfaNI GCATC 1 cut(s) 243
SfcI CTRYAG 1 cut(s) 132
Sfr274I CTCGAG 1 cut(s) 323
SlaI CTCGAG 1 cut(s) 323
SmiMI CAYNNNNRTG 1 cut(s) 26
SmlI CTYRAG 1 cut(s) 323
SmoI CTYRAG 1 cut(s) 323
Sse9I AATT 3 cut(s) 49, 187, 397
SseBI AGGCCT 1 cut(s) 364
SsiI CCGC 1 cut(s) 256
StuI AGGCCT 1 cut(s) 364
StyD4I CCNGG 2 cut(s) 339, 355
StyI CCWWGG 1 cut(s) 42
TaqI TCGA 3 cut(s) 95, 200, 324
TasI AATT 3 cut(s) 49, 187, 397
TfiI GAWTC 1 cut(s) 62
TscAI CASTG 2 cut(s) 28, 64
TspDTI ATGAA 1 cut(s) 374
TspRI CASTG 2 cut(s) 28, 64
XhoI CTCGAG 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.