Rh7AG293600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0020749
Physical Location & Seq
Forward (+)
31995434 .. 31995763
330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG293600.1

Sequence Viewer

Length: 330 bp
ATGGAGATAAGGGGTCTTATTAATGGTAAGAGTATTAATATAGATGTGGCAGAAGAAAACGTGGAAAACAGCACCCTTCTCTCTGCTCCCACATCATCCATGTCTGCGGCCTATGATGGTTGCAATGATATGCCATATTTATCCTCGGAAAATGTTTGTGGAGGATCGATTGGCTTTCAGGATGGTGCGTACTGGGTTGAGTCTTTGGTGGAGGTCCCAAGTACTGTTGAGCAACAAAAGACAGCTGATGAAGATTGTTCAGATTGGTTGGAGTCAATCAATTTTAGTCCTGAGGAGAACAACTTCCTTTTCAGTGAAATGCAATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

12.01

Weight (kDa)

4.05

Isoelectric Point (pI)

53.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020749)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0005776.1_g000003
rosa_roxburghii Rroxscaffold_3G00225370
rosa_rugosa Rorug06G0064200 Rorug07G0297500
rosa_samantha Rh7AG293600 Rh7AG451900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 107
AclWI GGATC 1 cut(s) 172
AfaI GTAC 2 cut(s) 191, 223
AluBI AGCT 1 cut(s) 245
AluI AGCT 1 cut(s) 245
AlwI GGATC 1 cut(s) 172
AoxI GGCC 1 cut(s) 108
AseI ATTAAT 2 cut(s) 21, 36
Asp700I GAANNNNTTC 1 cut(s) 302
AspS9I GGNCC 1 cut(s) 214
AvaII GGWCC 1 cut(s) 214
AxyI CCTNAGG 1 cut(s) 291
BccI CCATC 2 cut(s) 110, 176
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
BmcAI AGTACT 1 cut(s) 223
Bme18I GGWCC 1 cut(s) 214
BmgT120I GGNCC 1 cut(s) 214
BmiI GGNNCC 1 cut(s) 216
BmrI ACTGGG 1 cut(s) 202
BmuI ACTGGG 1 cut(s) 202
Bsa29I ATCGAT 1 cut(s) 167
BsaJI CCNNGG 1 cut(s) 144
Bse1I ACTGG 1 cut(s) 197
Bse21I CCTNAGG 1 cut(s) 291
Bse3DI GCAATG 2 cut(s) 130, 329
BseCI ATCGAT 1 cut(s) 167
BseDI CCNNGG 1 cut(s) 144
BseGI GGATG 2 cut(s) 95, 187
BseMI GCAATG 2 cut(s) 130, 329
BseMII CTCAG 1 cut(s) 282
BseNI ACTGG 1 cut(s) 197
BseRI GAGGAG 1 cut(s) 308
BshFI GGCC 1 cut(s) 110
BshVI ATCGAT 1 cut(s) 167
BslFI GGGAC 1 cut(s) 200
BsmFI GGGAC 1 cut(s) 200
BsnI GGCC 1 cut(s) 110
Bsp143I GATC 1 cut(s) 164
BspACI CCGC 1 cut(s) 107
BspANI GGCC 1 cut(s) 110
BspCNI CTCAG 1 cut(s) 283
BspDI ATCGAT 1 cut(s) 167
BspLI GGNNCC 1 cut(s) 216
BspPI GGATC 1 cut(s) 172
BsrDI GCAATG 2 cut(s) 130, 329
BsrI ACTGG 1 cut(s) 197
BssECI CCNNGG 1 cut(s) 144
BssMI GATC 1 cut(s) 164
Bst4CI ACNGT 1 cut(s) 226
BstDEI CTNAG 1 cut(s) 291
BstF5I GGATG 2 cut(s) 95, 187
BstKTI GATC 1 cut(s) 167
BstMBI GATC 1 cut(s) 164
Bsu15I ATCGAT 1 cut(s) 167
Bsu36I CCTNAGG 1 cut(s) 291
BsuRI GGCC 1 cut(s) 110
BsuTUI ATCGAT 1 cut(s) 167
BtsCI GGATG 2 cut(s) 95, 187
BtsIMutI CAGTG 1 cut(s) 319
Cfr13I GGNCC 1 cut(s) 214
ClaI ATCGAT 1 cut(s) 167
Csp6I GTAC 2 cut(s) 190, 222
CviAII CATG 1 cut(s) 100
CviJI RGCY 3 cut(s) 110, 174, 245
CviKI_1 RGCY 3 cut(s) 110, 174, 245
CviQI GTAC 2 cut(s) 190, 222
DdeI CTNAG 1 cut(s) 291
DpnI GATC 1 cut(s) 166
DpnII GATC 1 cut(s) 164
Eco47I GGWCC 1 cut(s) 214
Eco81I CCTNAGG 1 cut(s) 291
EcoO109I RGGNCCY 1 cut(s) 214
FaeI CATG 1 cut(s) 103
FaiI YATR 5 cut(s) 41, 101, 114, 131, 136
FaqI GGGAC 1 cut(s) 200
FatI CATG 1 cut(s) 99
Fnu4HI GCNGC 1 cut(s) 108
FokI GGATG 2 cut(s) 82, 194
Fsp4HI GCNGC 1 cut(s) 108
GluI GCNGC 1 cut(s) 108
HaeIII GGCC 1 cut(s) 110
Hin1II CATG 1 cut(s) 103
HinfI GANTC 2 cut(s) 200, 272
Hpy188I TCNGA 2 cut(s) 148, 262
Hpy188III TCNNGA 2 cut(s) 179, 290
HpyAV CCTTC 1 cut(s) 86
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4IV ACGT 1 cut(s) 60
HpyCH4V TGCA 2 cut(s) 123, 322
HpyF3I CTNAG 1 cut(s) 291
HpySE526I ACGT 1 cut(s) 60
Hsp92II CATG 1 cut(s) 103
Kzo9I GATC 1 cut(s) 164
LmnI GCTCC 1 cut(s) 91
LpnPI CCDG 3 cut(s) 164, 178, 303
MaeII ACGT 1 cut(s) 60
MalI GATC 1 cut(s) 166
MboI GATC 1 cut(s) 164
MboII GAAGA 2 cut(s) 65, 263
MluCI AATT 1 cut(s) 280
MlyI GAGTC 2 cut(s) 209, 281
MmeI TCCRAC 1 cut(s) 249
MnlI CCTC 4 cut(s) 154, 155, 205, 286
MroXI GAANNNNTTC 1 cut(s) 302
MseI TTAA 2 cut(s) 21, 36
MspA1I CMGCKG 1 cut(s) 245
NdeII GATC 1 cut(s) 164
NlaIII CATG 1 cut(s) 103
NlaIV GGNNCC 1 cut(s) 216
PdmI GAANNNNTTC 1 cut(s) 302
PkrI GCNGC 1 cut(s) 109
PleI GAGTC 2 cut(s) 208, 280
PpsI GAGTC 2 cut(s) 208, 280
PpuMI RGGWCCY 1 cut(s) 214
PshBI ATTAAT 2 cut(s) 21, 36
Psp5II RGGWCCY 1 cut(s) 214
PspN4I GGNNCC 1 cut(s) 216
PspPI GGNCC 1 cut(s) 214
PspPPI RGGWCCY 1 cut(s) 214
PvuII CAGCTG 1 cut(s) 245
RsaI GTAC 2 cut(s) 191, 223
RsaNI GTAC 2 cut(s) 190, 222
SaqAI TTAA 2 cut(s) 21, 36
SatI GCNGC 1 cut(s) 108
Sau3AI GATC 1 cut(s) 164
Sau96I GGNCC 1 cut(s) 214
ScaI AGTACT 1 cut(s) 223
SchI GAGTC 2 cut(s) 209, 281
SetI ASST 3 cut(s) 63, 216, 247
SgeI CNNG 7 cut(s) 73, 112, 157, 191, 205, 231, 302
SinI GGWCC 1 cut(s) 214
Sse9I AATT 1 cut(s) 280
SsiI CCGC 1 cut(s) 107
TaaI ACNGT 1 cut(s) 226
TaiI ACGT 1 cut(s) 63
TaqI TCGA 1 cut(s) 167
TasI AATT 1 cut(s) 280
TatI WGTACW 1 cut(s) 221
TauI GCSGC 1 cut(s) 110
Tru1I TTAA 2 cut(s) 21, 36
Tru9I TTAA 2 cut(s) 21, 36
TscAI CASTG 1 cut(s) 319
TspDTI ATGAA 1 cut(s) 264
TspRI CASTG 1 cut(s) 319
VpaK11BI GGWCC 1 cut(s) 214
VspI ATTAAT 2 cut(s) 21, 36
XmnI GAANNNNTTC 1 cut(s) 302
ZrmI AGTACT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.