Rmu_sc0005879.1_g000007
ERF Family

ARM repeat superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005879.1
OG0007462
Physical Location & Seq
Reverse (-)
24729 .. 34689
9961 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 4296 bp
atgggcagcggagctccggaggtcatgatctggattcagctcggctcggataattcgctttaccgccacaaacctccgtcaccgacccggccaccttccccaccgcacacgacgttttccggccatagttcacttcaacccgttccactctcttttctcaaaaacgactcctccaatcaccgcctctcaatttcgcggttctcactctccgccatggaggagaacgacgaatttgcagtctcggccgaagaaggaagaagcagagtgtttacgcagctaaagtcgtactgcttcgagcttctggagcttgttcaaaaccctaagaagagctcctcatcaatctcttctctgcttcaatttctgcgccagactccttctcatgctctccagcccttcttcgactatacgttgtttccattgctacttctattggatgcatctgtggattgtagatccccaaagaagcttggttctgaagaaaaagttgtgagtgctaatatcacgaaagttcctaaaaaagtgagtgacagtgttgctgaaggtgtgcttcagtgtctggaggaactcctcgcgaagtgtctcttaggatctgtagatcagatggttgttgtgctcaagaagttgacttatggggctttgctttcaccatctgatgcctcagaagagtttcgtgaaggagttattaagtgtttcagggcactgcttctgaatttatttccatgctctgataagtcctgtacatgtaatcaaatctttggtctgcctatgcttttagaaaagagagatttcatatctccacccattcgctccccaaagtacgcttcagcatcagatgaatgtttactttcatttctacagtcacaagctgcttctgcagctgttggacactggctatctcttcttctcaaagttgcagacaatgaggctgcacgaggacatctaggcagtgcaaagcttcgtgttgaagtgtttctgactcttcgtgtgcttgttgctaaggttggtactgctgacgcattggccttctttttacccggtgttgttagtcagtttgctaaagttttgcatgcctccaaaatgatgaccagtggagctgctggaagtggggatgcaattgatcaagcagttagaggtttggctgagtatctgatgatagttctgcaggatgatgctaatttatcgggatgtgatatgtcaataactgttacttctgacaaaaagcatgtgtctacacagtcttttatggatgagcttcgtcaattgcctgctaaggcgcatgctcaaagtaaaattttactggatgattcaagtgatcaaatgattacagctacttccaaatctgagaggaaaactaattctggcaagggtgatgcatcttttcatgtgaatcgtacggatgattggattgagaaaacttctgttcatgtggataaacttttgggcacaacttttcgacatatttgcattcatccagcaaaaaaagtgagacaagggctcctggcttctatacgaggactgttgtcaaagtgcacttatacgctgaggcagagtagacaaatgtttctggagtgcttgtgtgttttggttatcgatgactctgaagaggtgtctgcaggtgcacaggaatttcttgaaaatttattctcattggttggaaaatatcaattggaacaagatgttgctcagatttttagcaggctcattgataagcttccaaaagtggtgcttgggagtgaggaatcagttgcactgtcacacgctcagcagttacttgtaatcatgtactattcgggtcctcaatttgtggtggatcacatccttcagtctcctgtaacagctactcgtttcttggacatttttgctatttgtatgagtcaaaattcggtatttgctggatctcttgataagctaattacatcgaggccatcctcagtaatatacctagactctgtttctgagttgaaagctggaattaaccttaccagtgattaccggataaacttggctgctacccctcaaaatccaaaggttacagccatccaggagaaagatacaccctatacatcagataatgcccagaagaattatgagcttccacacatgcctccttggtttgtttacattgggggtcgaaaactataccaatctctttcagggattctcagacttgtgggtctatccttgatggcagataaaaaaaatggacagcatttggcacttgtcactgacattccactgggttacttgcgaaaattagtttctgaggtccgcatgaaggattataatgaaacaagttggcactcatggtataaaagaactggttcaggacagttgctacggcaagcaagcactgctgtatgtattctgaacgagatgatatttggtatatcagatcaagccactgaatatttcagaaggaggtttcagaattcgagaaaaagaaggcaagaatttcaggaatctgatgcagaatttgttggtggccaacctttcaaaaccgaattatccatgttcggtgaatctaggtggaaagttttacaggatgagggtttaacgagtcacttgattgattgtattggtagaattttacatgagtatctatctcatgaagtatgggatcttccaacagaaaatagaccttcgattatacttcatgactatgaagctgaggatattagcataaacttgtttcatgacacagctatgctacagcaggttattattgaaggaataggcataatcagtatctgccttggaggtgattttgcctctagcggatttcttcatcagtcactttatatgttgctcgagaatctcatttcttcaaactatcatgttagaagcgcttctgatgctgtgttgcatattctggctgctacatctggttatccgacagttgggcatctggtattggggaatgcagattatgtgatagattcaatatgcagacaattacgccatttggagattaatccccatgtaccaagtgtgcttgctgcaatgctatcttatattggagtagcttataagatattgcctttatttgaggagccgatgcgctcagtttctctggagcttgagattcttggcaggcatcagccccctgaattaacgattccctttttaaaggctgtagcagaaattgccaaggcatcaaagcgtgaggcctgttcattgccgacccatgcagagtcttacatgttggatgtcaaggctaaaatatctgatacggaaaagaaagatgaggatgacattaatatgtctcatgtggaatcagagaaatgggagagcattttgtttaagctgaatgattcaaagagatatagacgaacagttggtgctattgccagttcatgtattatggctgcaacccctcttctggcttcagaaaatcaagcagcttgtttggtagccttggatatagttgaggatggtgttacatcattggcgaaagtggaagaggcttatcgccatgagagagatactaaggaagtaattgaagaagtaattcagtcatattcactctatcatcttcaagataatttagatgctgccgatgaaggggctgatgagaacaggttgcttccagcaatgaataaaatatggcctttcctggttgtttgtattcgaaataaaaatccagtggttgttagaagatgtttatctgtagtaagcaatgcagtgcaaatttgtgggggagatttcttttcacgacgtttccatactgatggctcccacttctggaaacttttatccacatccccattccatagaaaacccaacttaaaagaagaaagaatccctctgcaacttccctacagaagcacatccagttcttcagagagttcaatggctgaaacttctaatctgaaagtccaggttgcggtgctcaacatgatcgctgaattgtcccgaaacaaaaggagtgcttcagcattggacattgtcctcaagaagatcagtggtcttgtggtagggatagcttgcagtggtgttgttggtctacgtgaagcatctgtaaatgcccttcaaggtcttgcgtctgttgatcctgatcttatatggcttcttatggctgatgtttactattctatgaagaaaaaggatataccttcacccccaacaccagatataccagcaatctcccaaattctacctccaccgtcatgtcctaaagagtacctttatgttcagtatggtggtcacagttatggttttgatgttgactttgtttctgttgaaactgttttcaacaaacttcactctctagcttttgttaatcaaatgtacagttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04150 map04150
Pfam Domains
Protein Families
No domains found.

Protein Analysis

1431

Amino Acids

158.75

Weight (kDa)

6.23

Isoelectric Point (pI)

50.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_TTI1_N PF24173 90 - 240 7.6e-06 TTI1 N-terminal TPR domain
TPR_TTI1_N PF24173 277 - 532 1.7e-19 TTI1 N-terminal TPR domain
TTI1 PF21547 932 - 1022 8.1e-26 TELO2-interacting protein 1
TPR_TTI1_C PF24181 1073 - 1355 6.8e-12 TTI1 C-terminal TPR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 2283, 3027
AarI CACCTGC 1 cut(s) 1604
AasI GACNNNNNNGTC 1 cut(s) 2172
Acc36I ACCTGC 2 cut(s) 1604, 2704
AccI GTMKAC 3 cut(s) 1229, 1552, 4003
AccII CGCG 2 cut(s) 196, 572
AccIII TCCGGA 1 cut(s) 16
AciI CCGC 9 cut(s) 9, 64, 104, 181, 196, 210, 2269, 2775, 3884
AclWI GGATC 6 cut(s) 447, 595, 1818, 1903, 2625, 4043
AcoI YGGCCR 4 cut(s) 89, 121, 243, 2482
AcuI CTGAAG 9 cut(s) 495, 533, 558, 807, 1620, 1805, 3369, 3822, 3915
AfaI GTAC 9 cut(s) 287, 739, 818, 1006, 1393, 1784, 2982, 4181, 4289
AfeI AGCGCT 1 cut(s) 2845
AfiI CCNNNNNNNGG 6 cut(s) 2275, 2897, 3379, 3561, 3741, 3883
AflIII ACRYGT 2 cut(s) 740, 3198
AjnI CCWGG 4 cut(s) 1497, 2040, 3612, 3876
AjuI GAANNNNNNNTTGG 2 cut(s) 805, 837
Alw21I GWGCWC 6 cut(s) 16, 332, 615, 1532, 1621, 3891
Alw26I GTCTC 5 cut(s) 244, 584, 1480, 1830, 3267
Alw44I GTGCAC 2 cut(s) 1528, 1617
AlwI GGATC 6 cut(s) 447, 595, 1818, 1903, 2625, 4043
AlwNI CAGNNNCTG 2 cut(s) 556, 2748
Ama87I CYCGRG 1 cut(s) 2807
Aor13HI TCCGGA 1 cut(s) 16
Aor51HI AGCGCT 1 cut(s) 2845
AoxI GGCC 8 cut(s) 89, 121, 243, 1020, 1922, 2482, 3165, 3605
ApaLI GTGCAC 2 cut(s) 1528, 1617
ArsI GACNNNNNNTTYG 4 cut(s) 222, 254, 742, 774
AseI ATTAAT 2 cut(s) 2970, 3255
Asp700I GAANNNNTTC 5 cut(s) 666, 969, 2320, 2845, 3507
AspLEI GCGC 4 cut(s) 366, 1276, 2846, 3060
AspS9I GGNCC 2 cut(s) 1793, 2266
AsuC2I CCSGG 2 cut(s) 88, 1035
AsuHPI GGTGA 7 cut(s) 72, 170, 636, 1379, 2528, 2771, 4107
AsuII TTCGAA 1 cut(s) 3628
AvaI CYCGRG 1 cut(s) 2807
AvaII GGWCC 2 cut(s) 1793, 2266
BaeGI GKGCMC 4 cut(s) 700, 1445, 1532, 1621
BaeI ACNNNNGTAYC 2 cut(s) 2579, 2612
BalI TGGCCA 1 cut(s) 2484
BanII GRGCYC 3 cut(s) 16, 332, 1497
BarI GAAGNNNNNNTAC 4 cut(s) 2604, 2636, 4011, 4043
BauI CACGAG 1 cut(s) 930
Bbv12I GWGCWC 6 cut(s) 16, 332, 615, 1532, 1621, 3891
BbvCI CCTCAGC 2 cut(s) 1541, 2667
BccI CCATC 7 cut(s) 595, 655, 1933, 2045, 2179, 3425, 3722
BceAI ACGGC 1 cut(s) 2354
BcgI CGANNNNNNTGC 4 cut(s) 215, 249, 1443, 1477
BciT130I CCWGG 4 cut(s) 1499, 2042, 3614, 3878
BclI TGATCA 2 cut(s) 1117, 1312
BcnI CCSGG 2 cut(s) 88, 1035
BcoDI GTCTC 5 cut(s) 244, 584, 1480, 1830, 3267
BfaI CTAG 5 cut(s) 941, 1943, 2523, 2772, 4268
BfmI CTRYAG 9 cut(s) 591, 854, 873, 1160, 1611, 2708, 3132, 3666, 3817
BfoI RGCGCY 1 cut(s) 2847
BfuAI ACCTGC 2 cut(s) 1604, 2704
BlpI GCTNAGC 1 cut(s) 1761
Bme1390I CCNGG 6 cut(s) 88, 1035, 1499, 2042, 3614, 3878
Bme18I GGWCC 2 cut(s) 1793, 2266
BmeT110I CYCGRG 1 cut(s) 2807
BmgT120I GGNCC 2 cut(s) 1793, 2266
BmiI GGNNCC 4 cut(s) 1496, 1794, 3051, 3733
BmrFI CCNGG 6 cut(s) 88, 1035, 1499, 2042, 3614, 3878
BmrI ACTGGG 1 cut(s) 2246
BmuI ACTGGG 1 cut(s) 2246
BoxI GACNNNNGTC 1 cut(s) 1519
BpmI CTGGAG 5 cut(s) 323, 371, 578, 1586, 3092
Bpu10I CCTNAGC 4 cut(s) 996, 1269, 1541, 2667
Bpu1102I GCTNAGC 1 cut(s) 1761
Bpu14I TTCGAA 1 cut(s) 3628
BpuEI CTTGAG 3 cut(s) 599, 3098, 3935
BpuMI CCSGG 2 cut(s) 88, 1035
Bsa29I ATCGAT 1 cut(s) 1590
BsaAI YACGTR 1 cut(s) 4007
BsaBI GATNNNNATC 2 cut(s) 3661, 4053
BsaJI CCNNGG 5 cut(s) 213, 2108, 2752, 3147, 3414
BsaWI WCCGGW 2 cut(s) 16, 1992
BsaXI ACNNNNNCTCC 6 cut(s) 155, 185, 1479, 1509, 1559, 1589
Bsc4I CCNNNNNNNGG 6 cut(s) 2275, 2897, 3379, 3561, 3741, 3883
Bse1I ACTGG 9 cut(s) 893, 1086, 1302, 1983, 2241, 2323, 3348, 3641, 3831
Bse3DI GCAATG 5 cut(s) 416, 3006, 3173, 3597, 3682
Bse8I GATNNNNATC 2 cut(s) 3661, 4053
BseAI TCCGGA 1 cut(s) 16
BseBI CCWGG 4 cut(s) 1499, 2042, 3614, 3878
BseCI ATCGAT 1 cut(s) 1590
BseDI CCNNGG 5 cut(s) 213, 2108, 2752, 3147, 3414
BseJI GATNNNNATC 2 cut(s) 3661, 4053
BseLI CCNNNNNNNGG 6 cut(s) 2275, 2897, 3379, 3561, 3741, 3883
BseMI GCAATG 5 cut(s) 416, 3006, 3173, 3597, 3682
BseNI ACTGG 9 cut(s) 893, 1086, 1302, 1983, 2241, 2323, 3348, 3641, 3831
BseRI GAGGAG 5 cut(s) 160, 233, 322, 557, 3062
BseSI GKGCMC 4 cut(s) 700, 1445, 1532, 1621
BseX3I CGGCCG 1 cut(s) 243
BsgI GTGCAG 1 cut(s) 912
Bsh1236I CGCG 2 cut(s) 196, 572
Bsh1285I CGRYCG 1 cut(s) 246
BshFI GGCC 8 cut(s) 91, 123, 245, 1022, 1924, 2484, 3167, 3607
BshVI ATCGAT 1 cut(s) 1590
BsiEI CGRYCG 1 cut(s) 246
BsiHKAI GWGCWC 6 cut(s) 16, 332, 615, 1532, 1621, 3891
BsiHKCI CYCGRG 1 cut(s) 2807
BsiSI CCGG 5 cut(s) 17, 88, 120, 1035, 1993
BsiWI CGTACG 1 cut(s) 1391
BslFI GGGAC 1 cut(s) 3895
BslI CCNNNNNNNGG 6 cut(s) 2275, 2897, 3379, 3561, 3741, 3883
BsmAI GTCTC 5 cut(s) 244, 584, 1480, 1830, 3267
BsmFI GGGAC 1 cut(s) 3895
BsmI GAATGC 2 cut(s) 1464, 2923
BsnI GGCC 8 cut(s) 91, 123, 245, 1022, 1924, 2484, 3167, 3607
BsoBI CYCGRG 1 cut(s) 2807
Bsp119I TTCGAA 1 cut(s) 3628
Bsp1286I GDGCHC 9 cut(s) 16, 332, 615, 700, 1445, 1497, 1532, 1621, 3891
Bsp13I TCCGGA 1 cut(s) 16
Bsp1407I TGTACA 2 cut(s) 737, 4287
Bsp1720I GCTNAGC 1 cut(s) 1761
Bsp19I CCATGG 1 cut(s) 213
Bsp68I TCGCGA 1 cut(s) 572
BspACI CCGC 9 cut(s) 9, 64, 104, 181, 196, 210, 2269, 2775, 3884
BspANI GGCC 8 cut(s) 91, 123, 245, 1022, 1924, 2484, 3167, 3607
BspDI ATCGAT 1 cut(s) 1590
BspEI TCCGGA 1 cut(s) 16
BspFNI CGCG 2 cut(s) 196, 572
BspHI TCATGA 4 cut(s) 24, 2605, 2653, 2692
BspLI GGNNCC 4 cut(s) 1496, 1794, 3051, 3733
BspMAI CTGCAG 3 cut(s) 877, 1164, 1615
BspMI ACCTGC 2 cut(s) 1604, 2704
BspPI GGATC 6 cut(s) 447, 595, 1818, 1903, 2625, 4043
BspQI GCTCTTC 1 cut(s) 320
BspT104I TTCGAA 1 cut(s) 3628
BsrDI GCAATG 5 cut(s) 416, 3006, 3173, 3597, 3682
BsrGI TGTACA 2 cut(s) 737, 4287
BsrI ACTGG 9 cut(s) 893, 1086, 1302, 1983, 2241, 2323, 3348, 3641, 3831
BssECI CCNNGG 5 cut(s) 213, 2108, 2752, 3147, 3414
BssSI CACGAG 1 cut(s) 930
BssT1I CCWWGG 5 cut(s) 213, 2108, 2752, 3147, 3414
Bst2BI CACGAG 1 cut(s) 930
Bst2UI CCWGG 4 cut(s) 1499, 2042, 3614, 3878
Bst6I CTCTTC 8 cut(s) 320, 349, 657, 903, 984, 1596, 3381, 3453
BstAPI GCANNNNNTGC 2 cut(s) 2351, 3143
BstAUI TGTACA 2 cut(s) 737, 4287
BstBAI YACGTR 1 cut(s) 4007
BstBI TTCGAA 1 cut(s) 3628
BstC8I GCNNGC 9 cut(s) 1068, 1266, 1278, 1697, 2343, 2347, 2994, 3092, 3985
BstDSI CCRYGG 1 cut(s) 213
BstFNI CGCG 2 cut(s) 196, 572
BstH2I RGCGCY 1 cut(s) 2847
BstHHI GCGC 4 cut(s) 366, 1276, 2846, 3060
BstMAI GTCTC 5 cut(s) 244, 584, 1480, 1830, 3267
BstMCI CGRYCG 1 cut(s) 246
BstMWI GCNNNNNNNGC 7 cut(s) 242, 304, 872, 875, 2351, 2852, 3143
BstNI CCWGG 4 cut(s) 1499, 2042, 3614, 3878
BstNSI RCATGY 6 cut(s) 744, 1070, 1226, 1280, 2104, 3202
BstPAI GACNNNNGTC 1 cut(s) 1519
BstSCI CCNGG 6 cut(s) 86, 1033, 1497, 2040, 3612, 3876
BstSFI CTRYAG 9 cut(s) 591, 854, 873, 1160, 1611, 2708, 3132, 3666, 3817
BstSLI GKGCMC 4 cut(s) 700, 1445, 1532, 1621
BstUI CGCG 2 cut(s) 196, 572
BstX2I RGATCY 4 cut(s) 452, 587, 1895, 2617
BstXI CCANNNNNNTGG 1 cut(s) 3728
BstYI RGATCY 4 cut(s) 452, 587, 1895, 2617
BstZI CGGCCG 1 cut(s) 243
Bsu15I ATCGAT 1 cut(s) 1590
BsuRI GGCC 8 cut(s) 91, 123, 245, 1022, 1924, 2484, 3167, 3607
BsuTUI ATCGAT 1 cut(s) 1590
BtgI CCRYGG 1 cut(s) 213
BtsI GCAGTG 5 cut(s) 698, 952, 2349, 3687, 3994
BtuMI TCGCGA 1 cut(s) 572
BveI ACCTGC 2 cut(s) 1604, 2704
Cac8I GCNNGC 9 cut(s) 1068, 1266, 1278, 1697, 2343, 2347, 2994, 3092, 3985
CaiI CAGNNNCTG 2 cut(s) 556, 2748
CciI TCATGA 4 cut(s) 24, 2605, 2653, 2692
CfoI GCGC 4 cut(s) 366, 1276, 2846, 3060
Cfr13I GGNCC 2 cut(s) 1793, 2266
ClaI ATCGAT 1 cut(s) 1590
CseI GACGC 2 cut(s) 1022, 4029
Csp6I GTAC 9 cut(s) 286, 738, 817, 1005, 1392, 1783, 2981, 4180, 4288
CviQI GTAC 9 cut(s) 286, 738, 817, 1005, 1392, 1783, 2981, 4180, 4288
DraI TTTAAA 1 cut(s) 3126
DrdI GACNNNNNNGTC 1 cut(s) 2172
DseDI GACNNNNNNGTC 1 cut(s) 2172
EaeI YGGCCR 4 cut(s) 89, 121, 243, 2482
EagI CGGCCG 1 cut(s) 243
Eam1104I CTCTTC 8 cut(s) 320, 349, 657, 903, 984, 1596, 3381, 3453
EarI CTCTTC 8 cut(s) 320, 349, 657, 903, 984, 1596, 3381, 3453
EciI GGCGGA 1 cut(s) 199
Ecl136II GAGCTC 2 cut(s) 14, 330
EclXI CGGCCG 1 cut(s) 243
Eco130I CCWWGG 5 cut(s) 213, 2108, 2752, 3147, 3414
Eco147I AGGCCT 1 cut(s) 3167
Eco24I GRGCYC 3 cut(s) 16, 332, 1497
Eco47I GGWCC 2 cut(s) 1793, 2266
Eco47III AGCGCT 1 cut(s) 2845
Eco52I CGGCCG 1 cut(s) 243
Eco53kI GAGCTC 2 cut(s) 14, 330
Eco57I CTGAAG 9 cut(s) 495, 533, 558, 807, 1620, 1805, 3369, 3822, 3915
Eco88I CYCGRG 1 cut(s) 2807
EcoICRI GAGCTC 2 cut(s) 14, 330
EcoO109I RGGNCCY 1 cut(s) 1793
EcoRI GAATTC 1 cut(s) 2428
EcoRII CCWGG 4 cut(s) 1497, 2040, 3612, 3876
EcoT14I CCWWGG 5 cut(s) 213, 2108, 2752, 3147, 3414
EcoT22I ATGCAT 2 cut(s) 439, 1375
EcoT38I GRGCYC 3 cut(s) 16, 332, 1497
ErhI CCWWGG 5 cut(s) 213, 2108, 2752, 3147, 3414
FaqI GGGAC 1 cut(s) 3895
FbaI TGATCA 2 cut(s) 1117, 1312
FblI GTMKAC 3 cut(s) 1229, 1552, 4003
FriOI GRGCYC 3 cut(s) 16, 332, 1497
FspBI CTAG 5 cut(s) 941, 1943, 2523, 2772, 4268
GlaI GCGC 4 cut(s) 365, 1275, 2845, 3059
GsuI CTGGAG 5 cut(s) 323, 371, 578, 1586, 3092
HaeII RGCGCY 1 cut(s) 2847
HaeIII GGCC 8 cut(s) 91, 123, 245, 1022, 1924, 2484, 3167, 3607
HapII CCGG 5 cut(s) 17, 88, 120, 1035, 1993
HgaI GACGC 2 cut(s) 1022, 4029
HhaI GCGC 4 cut(s) 366, 1276, 2846, 3060
Hin6I GCGC 4 cut(s) 364, 1274, 2844, 3058
HinP1I GCGC 4 cut(s) 364, 1274, 2844, 3058
HincII GTYRAC 2 cut(s) 624, 4225
HindII GTYRAC 2 cut(s) 624, 4225
HindIII AAGCTT 3 cut(s) 464, 953, 1709
HpaII CCGG 5 cut(s) 17, 88, 120, 1035, 1993
HphI GGTGA 7 cut(s) 72, 170, 636, 1379, 2528, 2771, 4107
Hpy99I CGWCG 3 cut(s) 115, 230, 3717
HpyCH4IV ACGT 4 cut(s) 113, 407, 3715, 4006
HpyF10VI GCNNNNNNNGC 7 cut(s) 242, 304, 872, 875, 2351, 2852, 3143
HpySE526I ACGT 4 cut(s) 113, 407, 3715, 4006
HspAI GCGC 4 cut(s) 364, 1274, 2844, 3058
Kpn2I TCCGGA 1 cut(s) 16
Ksp22I TGATCA 2 cut(s) 1117, 1312
LguI GCTCTTC 1 cut(s) 320
MaeI CTAG 5 cut(s) 941, 1943, 2523, 2772, 4268
MaeII ACGT 4 cut(s) 113, 407, 3715, 4006
MfeI CAATTG 3 cut(s) 1113, 1259, 1664
MflI RGATCY 4 cut(s) 452, 587, 1895, 2617
MhlI GDGCHC 9 cut(s) 16, 332, 615, 700, 1445, 1497, 1532, 1621, 3891
MlsI TGGCCA 1 cut(s) 2484
MluNI TGGCCA 1 cut(s) 2484
MlyI GAGTC 8 cut(s) 161, 364, 970, 1589, 1882, 1940, 2566, 3200
MmeI TCCRAC 5 cut(s) 862, 1633, 2648, 2915, 3183
Mox20I TGGCCA 1 cut(s) 2484
Mph1103I ATGCAT 2 cut(s) 439, 1375
MroI TCCGGA 1 cut(s) 16
MroXI GAANNNNTTC 5 cut(s) 666, 969, 2320, 2845, 3507
MscI TGGCCA 1 cut(s) 2484
MslI CAYNNNNRTG 6 cut(s) 2658, 2702, 3257, 3726, 4165, 4209
Msp20I TGGCCA 1 cut(s) 2484
MspA1I CMGCKG 2 cut(s) 9, 878
MspI CCGG 5 cut(s) 17, 88, 120, 1035, 1993
MspR9I CCNGG 6 cut(s) 88, 1035, 1499, 2042, 3614, 3878
MunI CAATTG 3 cut(s) 1113, 1259, 1664
Mva1269I GAATGC 2 cut(s) 1464, 2923
MvaI CCWGG 4 cut(s) 1499, 2042, 3614, 3878
MvnI CGCG 2 cut(s) 196, 572
MwoI GCNNNNNNNGC 7 cut(s) 242, 304, 872, 875, 2351, 2852, 3143
NciI CCSGG 2 cut(s) 88, 1035
NcoI CCATGG 1 cut(s) 213
NlaIV GGNNCC 4 cut(s) 1496, 1794, 3051, 3733
NmeAIII GCCGAG 2 cut(s) 21, 221
NmuCI GTSAC 8 cut(s) 78, 524, 858, 1752, 2221, 2558, 2790, 4202
NruI TCGCGA 1 cut(s) 572
NsiI ATGCAT 2 cut(s) 439, 1375
NspI RCATGY 6 cut(s) 744, 1070, 1226, 1280, 2104, 3202
NspV TTCGAA 1 cut(s) 3628
PaeI GCATGC 2 cut(s) 1070, 1280
PaeR7I CTCGAG 1 cut(s) 2807
PagI TCATGA 4 cut(s) 24, 2605, 2653, 2692
PaqCI CACCTGC 1 cut(s) 1604
PceI AGGCCT 1 cut(s) 3167
PciI ACATGT 2 cut(s) 740, 3198
PciSI GCTCTTC 1 cut(s) 320
PctI GAATGC 2 cut(s) 1464, 2923
PdmI GAANNNNTTC 5 cut(s) 666, 969, 2320, 2845, 3507
Pfl23II CGTACG 1 cut(s) 1391
PflFI GACNNNGTC 1 cut(s) 3944
PfoI TCCNGGA 1 cut(s) 2040
PleI GAGTC 8 cut(s) 161, 364, 970, 1589, 1881, 1940, 2565, 3199
PpsI GAGTC 8 cut(s) 161, 364, 970, 1589, 1881, 1940, 2565, 3199
Ppu21I YACGTR 1 cut(s) 4007
PpuMI RGGWCCY 1 cut(s) 1793
PscI ACATGT 2 cut(s) 740, 3198
PshAI GACNNNNGTC 1 cut(s) 1519
PshBI ATTAAT 2 cut(s) 2970, 3255
PsiI TTATAA 2 cut(s) 2283, 3027
Psp124BI GAGCTC 2 cut(s) 16, 332
Psp5II RGGWCCY 1 cut(s) 1793
Psp6I CCWGG 4 cut(s) 1497, 2040, 3612, 3876
PspGI CCWGG 4 cut(s) 1497, 2040, 3612, 3876
PspLI CGTACG 1 cut(s) 1391
PspN4I GGNNCC 4 cut(s) 1496, 1794, 3051, 3733
PspPI GGNCC 2 cut(s) 1793, 2266
PspPPI RGGWCCY 1 cut(s) 1793
PstI CTGCAG 3 cut(s) 877, 1164, 1615
PstNI CAGNNNCTG 2 cut(s) 556, 2748
PsuI RGATCY 4 cut(s) 452, 587, 1895, 2617
PsyI GACNNNGTC 1 cut(s) 3944
PvuII CAGCTG 1 cut(s) 878
RruI TCGCGA 1 cut(s) 572
RsaI GTAC 9 cut(s) 287, 739, 818, 1006, 1393, 1784, 2982, 4181, 4289
RsaNI GTAC 9 cut(s) 286, 738, 817, 1005, 1392, 1783, 2981, 4180, 4288
RseI CAYNNNNRTG 6 cut(s) 2658, 2702, 3257, 3726, 4165, 4209
SacI GAGCTC 2 cut(s) 16, 332
SapI GCTCTTC 1 cut(s) 320
Sau96I GGNCC 2 cut(s) 1793, 2266
SchI GAGTC 8 cut(s) 161, 364, 970, 1589, 1882, 1940, 2566, 3200
ScrFI CCNGG 6 cut(s) 88, 1035, 1499, 2042, 3614, 3878
SduI GDGCHC 9 cut(s) 16, 332, 615, 700, 1445, 1497, 1532, 1621, 3891
SfcI CTRYAG 9 cut(s) 591, 854, 873, 1160, 1611, 2708, 3132, 3666, 3817
Sfr274I CTCGAG 1 cut(s) 2807
SfuI TTCGAA 1 cut(s) 3628
SinI GGWCC 2 cut(s) 1793, 2266
SlaI CTCGAG 1 cut(s) 2807
SmiMI CAYNNNNRTG 6 cut(s) 2658, 2702, 3257, 3726, 4165, 4209
SmlI CTYRAG 4 cut(s) 614, 2807, 3077, 3950
SmoI CTYRAG 4 cut(s) 614, 2807, 3077, 3950
SphI GCATGC 2 cut(s) 1070, 1280
SseBI AGGCCT 1 cut(s) 3167
SsiI CCGC 9 cut(s) 9, 64, 104, 181, 196, 210, 2269, 2775, 3884
SspI AATATT 1 cut(s) 2408
SspMI CTAG 5 cut(s) 941, 1943, 2523, 2772, 4268
SstI GAGCTC 2 cut(s) 16, 332
StuI AGGCCT 1 cut(s) 3167
StyD4I CCNGG 6 cut(s) 86, 1033, 1497, 2040, 3612, 3876
StyI CCWWGG 5 cut(s) 213, 2108, 2752, 3147, 3414
TaiI ACGT 4 cut(s) 116, 410, 3718, 4009
TatI WGTACW 3 cut(s) 737, 1782, 4287
TseFI GTSAC 8 cut(s) 78, 524, 858, 1752, 2221, 2558, 2790, 4202
Tsp45I GTSAC 8 cut(s) 78, 524, 858, 1752, 2221, 2558, 2790, 4202
TspGWI ACGGA 3 cut(s) 66, 1409, 3245
Tth111I GACNNNGTC 1 cut(s) 3944
VneI GTGCAC 2 cut(s) 1528, 1617
VpaK11BI GGWCC 2 cut(s) 1793, 2266
VspI ATTAAT 2 cut(s) 2970, 3255
XceI RCATGY 6 cut(s) 744, 1070, 1226, 1280, 2104, 3202
XhoI CTCGAG 1 cut(s) 2807
XmiI GTMKAC 3 cut(s) 1229, 1552, 4003
XmnI GAANNNNTTC 5 cut(s) 666, 969, 2320, 2845, 3507
XspI CTAG 5 cut(s) 941, 1943, 2523, 2772, 4268
Zsp2I ATGCAT 2 cut(s) 439, 1375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.