Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007462

Physical Location & Seq

Genomic Coordinates Forward (+)

7601484 .. 7604385

Gene Structure 2902 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0088300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2157 bp

ATGGCTTCCGCGGCGATATTCTCTTCGTTACGGCGGCGGAGGTCGCCGTCTCTGGAGGCCTTTTTAGCTCCGGTGGACCTCTCCGACGTGGCGCTTGTACAGACTCTGGTTTCGGTCACGGCGGAGATTGTGTCGTCGTTTTCAGACAGGCTGTTCTATTTCCAGAGACGGAATTCGAGGTCGTTGGTCCGGAAGGTCGAGGTCTTTCTCGTGCTTTTGGAGTCTTTGAACGACTCCGCCGCCGGGTCGACCCTGCCGTGGACGGCGGTGATTTGCCTCAAGGAGCTTTATCTGCTGCTGTACAGATCCAAGATCCTGCTCGATTACTGCGCCCAGTCCAGTAAGCTCTGGCTTTTGCTCCAGCACCATCCGATTTCCGGCCATTTCCACGACTTGAATCAGGAAATCTCGACCCTTCTGGACGTTTTGCCGATTGACGAGGTTGAGTTGGGGGAGGACGTGAGGGAGCAGGTTGAGCTTCTGCAGAGACAGGCCAGGAGGGCGAGGCTGTTGATCGACGAAGCCGACGAGGAGTTGAGGATTCAGTTGTTTAGTTTCCTAGATGAATTCGAGATGGGGAGGGTGCCGAATTCGGATGACGTGTGCGTCTTCTTCCATCAGAGATTGGGGATTAGGGATGCCAAGAGCTGCAGGCATGAGATTGAGTTCTTGGAAGAGCAGATTGTGAATCACGAGGGGGATGTTGAGCCTACAGTGTCTGTGCTTAATGGGTTTGTGGCGTTCACAAGGTATTGCAGGTTCTTGCTTTTCGGATTCGAGGAGGATGAGGTGGAGGTTGGGGGTCAGCAGAGGAAGCCGAGGAAGGGTTTGATTAGTCAGGAGATTGCTGAGACTTTTATTACGATTCCCAAAGATTTTTGCTGCCCTATTAGTTTGGATTTGATGAGAGAGCCTGTGATAATCTCGACCGGGCAGACGTACGATCGGATTTCCATTTCGAGGTGGCTGGAAGAGGGGCATTGTACTTGTCCCAAAACAGGTCAAATGCTGCCTAATACCAGGCTTGTTCCGAATCGGGCGTTGAGGAATTTGATCTTGCAGTGGTGCACTGCTTTTGGAGTTCCTTATGATTCTCCCGACTGTACTGAAGCATCAGCAGAAAGCTTTGCAGGGGCCTCTCCCTCTAAGGCTGCACTTGCAGCCAACAGAGCTACGGCAGGGCTTTTGATCAAACGGCTAGCGGAGGATGGATCCACATGCGGACAGACTATAGCTGCTCGGGAGATTCGGTTGTTGGCCAAGACTGGAAGGGAGAACCGTGCTTTCATTGCGGAAGCTGGGGCAATTCCCCACCTTCGGAAGCTGCTCTCTTCTCCAAACTCGGTTGCACAAGAGAACTCTGTGACGGCAATGCTTAACCTGTCGATTTATGACAAAAACAAAAGCAGGATTATGGATGAAGAAGGGTGTTTGGGATCGATTGTCAATGTGCTGAGGTTTGGGCACACAACAGAAGCAAGGGAGAATGCCGCGGCAACGTTGTTTAGTCTGTCTGCAGTTCATGACTACAAGAAGAGAATAGCGGATGAGGAAGGGGGAATTGAAGCCTTGGCAGGGCTGTTGTTACATGGCACCCAAAGAGGAAAGAAGGATGCTGTGACAGCTTTGTTTAACTTGTCCACGCACACAGAAAATTGCGCGAGAATGATTGAGGCTGGGGCTGTAACAGCATTGGTAAGTGCATTGGGAATTGAAGGTGTTGCTGAGGAATCAGCAGGTGCATTGGCCTTGATTGTTAGGCAGCCAAGTGGAGCTACAGCAGTAGGAAAAGAGGAAATGGCAGTGGCTGGTTTAATAGGGATGATGCGTTGCGGGACTCCAAGGGGTAAAGAAAATGCAGTTGCAGCTTTGCTTGAGTTGTGTCGGCATGGTGGAGCCGCTGCAACTGAGAGAGTAGTCAAGGCACCATCTTTGGCTGGTTTGCTTCAGACGCTGCTGTTCACCGGTACAAAGAGGGCAAGAAGAAAGGCGGCGTCTCTTGCTAGAGTGTTTCAAAGGTGTGAGAATGCGTCGACGATGCATTATGGTGGTCTTGGAGTAGGATACGCATTTGCAGGCAACTCGGCTGCAAATCGTGATACAAGTTTCGTTGGTGATGTCTCAGTGCAAATGTCCATTTCGGTGCCTGTGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04150 map04150

Pfam Domains

Protein Families

No domains found.

Protein Analysis

718

Amino Acids

78.5

Weight (kDa)

6.09

Isoelectric Point (pI)

46.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUB10_N	PF25368	56 - 168	6.3e-15	PUB10-like, N-terminal domain
U-box	PF04564	289 - 356	1.8e-18	U-box domain
ARM_PUB	PF25598	397 - 673	1.1e-17	Plant U-box protein ARM repeat region
Arm	PF00514	425 - 462	1e-07	Armadillo/beta-catenin-like repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79190 AT1G79190
fragaria_vesca	FvH4_3g15310 FvH4_3g15310
malus_domestica	MD05G1224200.v1.1
prunus_persica	Prupe.4G136200_v2.0.a1 Prupe.4G136200_v2.0.a1 Prupe.4G136200_v2.0.a1 Prupe.4G136200_v2.0.a1 Prupe.4G136200_v2.0.a1 Prupe.4G136200_v2.0.a1 Prupe.4G136200_v2.0.a1
pyrus_communis	pycom05g20690
rosa_chinensis	RchiOBHm_Chr5g0025751
rosa_laevigata	RLG00000032869
rosa_multiflora	Rmu_sc0005580.1_g000012 Rmu_sc0005879.1_g000007
rosa_roxburghii	Rroxscaffold_1G00053440 Rroxscaffold_1G00054310
rosa_rugosa	Rorug05G0088300
rosa_samantha	Rh5AG180200 Rh5BG178900 Rh5CG196700 Rh5DG178600
rosa_wichuraiana	Rw5G016350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1727
AasI	GACNNNNNNGTC	1 cut(s)	605
Acc36I	ACCTGC	3 cut(s)	460, 747, 1727
AccB1I	GGYRCC	4 cut(s)	583, 1592, 1924, 2143
AccI	GTMKAC	2 cut(s)	248, 2033
AccII	CGCG	3 cut(s)	11, 1493, 1661
AccIII	TCCGGA	1 cut(s)	189
AclI	AACGTT	1 cut(s)	1499
AclWI	GGATC	5 cut(s)	300, 307, 1206, 1219, 1444
AcoI	YGGCCR	2 cut(s)	379, 1257
AcsI	RAATTY	4 cut(s)	172, 566, 589, 1048
AcuI	CTGAAG	2 cut(s)	1128, 1931
AcyI	GRCGYC	1 cut(s)	1994
AfaI	GTAC	6 cut(s)	99, 302, 941, 985, 1105, 1969
AfiI	CCNNNNNNNGG	8 cut(s)	243, 258, 377, 824, 960, 998, 1317, 1575
AflIII	ACRYGT	1 cut(s)	600
AgeI	ACCGGT	1 cut(s)	1964
AgsI	TTSAA	5 cut(s)	229, 397, 1565, 1715, 2015
AjiI	CACGTC	3 cut(s)	88, 460, 601
AjnI	CCWGG	2 cut(s)	494, 1019
Alw21I	GWGCWC	1 cut(s)	1070
Alw26I	GTCTC	6 cut(s)	54, 160, 481, 845, 2001, 2125
Alw44I	GTGCAC	1 cut(s)	1066
AlwI	GGATC	5 cut(s)	300, 307, 1206, 1219, 1444
AlwNI	CAGNNNCTG	4 cut(s)	106, 719, 1808, 1954
Ama87I	CYCGRG	1 cut(s)	1239
Aor13HI	TCCGGA	1 cut(s)	189
AoxI	GGCC	6 cut(s)	57, 379, 492, 1134, 1257, 1746
ApaLI	GTGCAC	1 cut(s)	1066
ApoI	RAATTY	4 cut(s)	172, 566, 589, 1048
ArsI	GACNNNNNNTTYG	2 cut(s)	94, 126
AsiGI	ACCGGT	1 cut(s)	1964
AspLEI	GCGC	3 cut(s)	94, 332, 1661
AspS9I	GGNCC	3 cut(s)	76, 187, 1134
AsuC2I	CCSGG	2 cut(s)	244, 931
AsuHPI	GGTGA	3 cut(s)	280, 1954, 2126
AsuNHI	GCTAGC	1 cut(s)	1198
AvaI	CYCGRG	1 cut(s)	1239
AvaII	GGWCC	2 cut(s)	76, 187
BaeGI	GKGCMC	2 cut(s)	1070, 1467
BalI	TGGCCA	1 cut(s)	1259
BamHI	GGATCC	1 cut(s)	1211
BanI	GGYRCC	4 cut(s)	583, 1592, 1924, 2143
BauI	CACGAG	2 cut(s)	209, 692
BbsI	GAAGAC	1 cut(s)	601
Bbv12I	GWGCWC	1 cut(s)	1070
BbvCI	CCTCAGC	2 cut(s)	1454, 1725
BccI	CCATC	5 cut(s)	375, 568, 624, 1202, 1936
BceAI	ACGGC	8 cut(s)	31, 47, 135, 241, 279, 1191, 1211, 1383
BcgI	CGANNNNNNTGC	2 cut(s)	2064, 2098
BciT130I	CCWGG	2 cut(s)	496, 1021
BciVI	GTATCC	1 cut(s)	2057
BclI	TGATCA	1 cut(s)	1188
BcnI	CCSGG	2 cut(s)	244, 931
BcoDI	GTCTC	6 cut(s)	54, 160, 481, 845, 2001, 2125
BfaI	CTAG	3 cut(s)	560, 1199, 2004
BfmI	CTRYAG	6 cut(s)	482, 649, 711, 1230, 1515, 1776
BfoI	RGCGCY	1 cut(s)	95
BfuAI	ACCTGC	3 cut(s)	460, 747, 1727
BfuI	GTATCC	1 cut(s)	2057
BglI	GCCNNNNNGGC	1 cut(s)	500
Bme1390I	CCNGG	4 cut(s)	244, 496, 931, 1021
Bme18I	GGWCC	2 cut(s)	76, 187
BmeT110I	CYCGRG	1 cut(s)	1239
BmgBI	CACGTC	3 cut(s)	88, 460, 601
BmgT120I	GGNCC	3 cut(s)	76, 187, 1134
BmiI	GGNNCC	7 cut(s)	585, 1135, 1213, 1594, 1897, 1926, 2145
BmrFI	CCNGG	4 cut(s)	244, 496, 931, 1021
BmrI	ACTGGG	1 cut(s)	328
BmsI	GCATC	5 cut(s)	628, 1121, 1603, 1815, 2028
BmtI	GCTAGC	1 cut(s)	1202
BmuI	ACTGGG	1 cut(s)	328
BpiI	GAAGAC	1 cut(s)	601
BpmI	CTGGAG	2 cut(s)	74, 344
Bpu10I	CCTNAGC	2 cut(s)	1454, 1725
BpuEI	CTTGAG	2 cut(s)	263, 1895
BpuMI	CCSGG	2 cut(s)	244, 931
Bsa29I	ATCGAT	1 cut(s)	1439
BsaHI	GRCGYC	1 cut(s)	1994
BsaJI	CCNNGG	6 cut(s)	9, 257, 818, 1491, 1569, 1841
BsaWI	WCCGGW	3 cut(s)	70, 189, 1964
BsaXI	ACNNNNNCTCC	4 cut(s)	116, 146, 1235, 1265
Bsc4I	CCNNNNNNNGG	8 cut(s)	243, 258, 377, 824, 960, 998, 1317, 1575
Bse118I	RCCGGY	1 cut(s)	1964
Bse1I	ACTGG	3 cut(s)	334, 339, 1270
Bse3DI	GCAATG	2 cut(s)	1287, 1377
BseAI	TCCGGA	1 cut(s)	189
BseBI	CCWGG	2 cut(s)	496, 1021
BseCI	ATCGAT	1 cut(s)	1439
BseDI	CCNNGG	6 cut(s)	9, 257, 818, 1491, 1569, 1841
BseLI	CCNNNNNNNGG	8 cut(s)	243, 258, 377, 824, 960, 998, 1317, 1575
BseMI	GCAATG	2 cut(s)	1287, 1377
BseMII	CTCAG	5 cut(s)	840, 1445, 1716, 1899, 2136
BseNI	ACTGG	3 cut(s)	334, 339, 1270
BseRI	GAGGAG	2 cut(s)	545, 794
BseSI	GKGCMC	2 cut(s)	1070, 1467
BseYI	CCCAGC	2 cut(s)	1298, 1676
BsgI	GTGCAG	1 cut(s)	1137
Bsh1236I	CGCG	3 cut(s)	11, 1493, 1661
Bsh1285I	CGRYCG	2 cut(s)	930, 946
BshFI	GGCC	6 cut(s)	59, 381, 494, 1136, 1259, 1748
BshNI	GGYRCC	4 cut(s)	583, 1592, 1924, 2143
BshTI	ACCGGT	1 cut(s)	1964
BshVI	ATCGAT	1 cut(s)	1439
BsiEI	CGRYCG	2 cut(s)	930, 946
BsiHKAI	GWGCWC	1 cut(s)	1070
BsiHKCI	CYCGRG	1 cut(s)	1239
BsiSI	CCGG	6 cut(s)	71, 190, 243, 378, 930, 1965
BsiWI	CGTACG	1 cut(s)	939
BslFI	GGGAC	2 cut(s)	975, 1849
BslI	CCNNNNNNNGG	8 cut(s)	243, 258, 377, 824, 960, 998, 1317, 1575
BsmAI	GTCTC	6 cut(s)	54, 160, 481, 845, 2001, 2125
BsmBI	CGTCTC	3 cut(s)	54, 160, 2001
BsmFI	GGGAC	2 cut(s)	975, 1849
BsmI	GAATGC	2 cut(s)	1492, 2032
BsnI	GGCC	6 cut(s)	59, 381, 494, 1136, 1259, 1748
BsoBI	CYCGRG	1 cut(s)	1239
Bsp1286I	GDGCHC	2 cut(s)	1070, 1467
Bsp13I	TCCGGA	1 cut(s)	189
Bsp1407I	TGTACA	2 cut(s)	97, 300
Bsp143I	GATC	8 cut(s)	305, 312, 513, 943, 1053, 1188, 1211, 1436
BspANI	GGCC	6 cut(s)	59, 381, 494, 1136, 1259, 1748
BspCNI	CTCAG	5 cut(s)	841, 1446, 1717, 1900, 2135
BspDI	ATCGAT	1 cut(s)	1439
BspEI	TCCGGA	1 cut(s)	189
BspFNI	CGCG	3 cut(s)	11, 1493, 1661
BspHI	TCATGA	1 cut(s)	1522
BspLI	GGNNCC	7 cut(s)	585, 1135, 1213, 1594, 1897, 1926, 2145
BspMAI	CTGCAG	3 cut(s)	486, 653, 1519
BspMI	ACCTGC	3 cut(s)	460, 747, 1727
BspOI	GCTAGC	1 cut(s)	1202
BspPI	GGATC	5 cut(s)	300, 307, 1206, 1219, 1444
BspQI	GCTCTTC	1 cut(s)	669
BspT107I	GGYRCC	4 cut(s)	583, 1592, 1924, 2143
BsrDI	GCAATG	2 cut(s)	1287, 1377
BsrFI	RCCGGY	1 cut(s)	1964
BsrGI	TGTACA	2 cut(s)	97, 300
BsrI	ACTGG	3 cut(s)	334, 339, 1270
BssAI	RCCGGY	1 cut(s)	1964
BssECI	CCNNGG	6 cut(s)	9, 257, 818, 1491, 1569, 1841
BssMI	GATC	8 cut(s)	305, 312, 513, 943, 1053, 1188, 1211, 1436
BssNI	GRCGYC	1 cut(s)	1994
BssSI	CACGAG	2 cut(s)	209, 692
BssT1I	CCWWGG	2 cut(s)	1569, 1841
Bst2BI	CACGAG	2 cut(s)	209, 692
Bst2UI	CCWGG	2 cut(s)	496, 1021
Bst4CI	ACNGT	3 cut(s)	715, 1103, 1280
Bst6I	CTCTTC	5 cut(s)	28, 669, 966, 1336, 1529
BstACI	GRCGYC	1 cut(s)	1994
BstAUI	TGTACA	2 cut(s)	97, 300
BstC8I	GCNNGC	3 cut(s)	653, 1200, 2077
BstDEI	CTNAG	6 cut(s)	849, 1146, 1454, 1725, 1908, 2122
BstDSI	CCRYGG	3 cut(s)	9, 257, 1491
BstFNI	CGCG	3 cut(s)	11, 1493, 1661
BstH2I	RGCGCY	1 cut(s)	95
BstHHI	GCGC	3 cut(s)	94, 332, 1661
BstKTI	GATC	8 cut(s)	308, 315, 516, 946, 1056, 1191, 1214, 1439
BstMAI	GTCTC	6 cut(s)	54, 160, 481, 845, 2001, 2125
BstMBI	GATC	8 cut(s)	305, 312, 513, 943, 1053, 1188, 1211, 1436
BstMCI	CGRYCG	2 cut(s)	930, 946
BstNI	CCWGG	2 cut(s)	496, 1021
BstNSI	RCATGY	1 cut(s)	1221
BstSCI	CCNGG	4 cut(s)	242, 494, 929, 1019
BstSFI	CTRYAG	6 cut(s)	482, 649, 711, 1230, 1515, 1776
BstSLI	GKGCMC	2 cut(s)	1070, 1467
BstUI	CGCG	3 cut(s)	11, 1493, 1661
BstV2I	GAAGAC	1 cut(s)	601
BstX2I	RGATCY	3 cut(s)	305, 312, 1211
BstYI	RGATCY	3 cut(s)	305, 312, 1211
Bsu15I	ATCGAT	1 cut(s)	1439
BsuI	GTATCC	1 cut(s)	2057
BsuRI	GGCC	6 cut(s)	59, 381, 494, 1136, 1259, 1748
BsuTUI	ATCGAT	1 cut(s)	1439
BtgI	CCRYGG	3 cut(s)	9, 257, 1491
BtrI	CACGTC	3 cut(s)	88, 460, 601
BtsI	GCAGTG	3 cut(s)	1067, 1068, 1809
BtsIMutI	CAGTG	5 cut(s)	720, 1067, 1068, 1809, 2130
BveI	ACCTGC	3 cut(s)	460, 747, 1727
Cac8I	GCNNGC	3 cut(s)	653, 1200, 2077
CaiI	CAGNNNCTG	4 cut(s)	106, 719, 1808, 1954
CciI	TCATGA	1 cut(s)	1522
CfoI	GCGC	3 cut(s)	94, 332, 1661
Cfr10I	RCCGGY	1 cut(s)	1964
Cfr13I	GGNCC	3 cut(s)	76, 187, 1134
Cfr42I	CCGCGG	2 cut(s)	12, 1494
ClaI	ATCGAT	1 cut(s)	1439
CseI	GACGC	4 cut(s)	595, 1960, 1983, 2019
Csp6I	GTAC	6 cut(s)	98, 301, 940, 984, 1104, 1968
CspAI	ACCGGT	1 cut(s)	1964
CviAII	CATG	5 cut(s)	656, 1218, 1523, 1589, 1889
CviQI	GTAC	6 cut(s)	98, 301, 940, 984, 1104, 1968
DdeI	CTNAG	6 cut(s)	849, 1146, 1454, 1725, 1908, 2122
DpnI	GATC	8 cut(s)	307, 314, 515, 945, 1055, 1190, 1213, 1438
DpnII	GATC	8 cut(s)	305, 312, 513, 943, 1053, 1188, 1211, 1436
DrdI	GACNNNNNNGTC	1 cut(s)	605
DseDI	GACNNNNNNGTC	1 cut(s)	605
EaeI	YGGCCR	2 cut(s)	379, 1257
Eam1104I	CTCTTC	5 cut(s)	28, 669, 966, 1336, 1529
EarI	CTCTTC	5 cut(s)	28, 669, 966, 1336, 1529
EciI	GGCGGA	3 cut(s)	52, 137, 226
Eco130I	CCWWGG	2 cut(s)	1569, 1841
Eco147I	AGGCCT	1 cut(s)	59
Eco47I	GGWCC	2 cut(s)	76, 187
Eco57I	CTGAAG	2 cut(s)	1128, 1931
Eco88I	CYCGRG	1 cut(s)	1239
EcoO109I	RGGNCCY	1 cut(s)	1134
EcoRI	GAATTC	3 cut(s)	172, 566, 589
EcoRII	CCWGG	2 cut(s)	494, 1019
EcoT14I	CCWWGG	2 cut(s)	1569, 1841
EcoT22I	ATGCAT	1 cut(s)	2043
ErhI	CCWWGG	2 cut(s)	1569, 1841
Esp3I	CGTCTC	3 cut(s)	54, 160, 2001
FaeI	CATG	5 cut(s)	659, 1221, 1526, 1592, 1892
FaqI	GGGAC	2 cut(s)	975, 1849
FatI	CATG	5 cut(s)	655, 1217, 1522, 1588, 1888
FauI	CCCGC	1 cut(s)	1826
FbaI	TGATCA	1 cut(s)	1188
FblI	GTMKAC	2 cut(s)	248, 2033
FspBI	CTAG	3 cut(s)	560, 1199, 2004
GlaI	GCGC	3 cut(s)	93, 331, 1660
GsaI	CCCAGC	2 cut(s)	1302, 1680
GsuI	CTGGAG	2 cut(s)	74, 344
HaeII	RGCGCY	1 cut(s)	95
HaeIII	GGCC	6 cut(s)	59, 381, 494, 1136, 1259, 1748
HapII	CCGG	6 cut(s)	71, 190, 243, 378, 930, 1965
HgaI	GACGC	4 cut(s)	595, 1960, 1983, 2019
HhaI	GCGC	3 cut(s)	94, 332, 1661
Hin1I	GRCGYC	1 cut(s)	1994
Hin1II	CATG	5 cut(s)	659, 1221, 1526, 1592, 1892
Hin6I	GCGC	3 cut(s)	92, 330, 1659
HinP1I	GCGC	3 cut(s)	92, 330, 1659
HincII	GTYRAC	2 cut(s)	249, 2034
HindII	GTYRAC	2 cut(s)	249, 2034
HindIII	AAGCTT	1 cut(s)	1123
HpaII	CCGG	6 cut(s)	71, 190, 243, 378, 930, 1965
HphI	GGTGA	3 cut(s)	280, 1954, 2126
Hpy166II	GTNNAC	8 cut(s)	76, 249, 261, 744, 1068, 1641, 1962, 2034
Hpy8I	GTNNAC	8 cut(s)	76, 249, 261, 744, 1068, 1641, 1962, 2034
Hpy99I	CGWCG	6 cut(s)	89, 139, 521, 530, 2035, 2038
HpyAV	CCTTC	9 cut(s)	187, 425, 817, 1263, 1325, 1418, 1547, 1603, 1709
HpyCH4III	ACNGT	3 cut(s)	715, 1103, 1280
HpyCH4IV	ACGT	6 cut(s)	87, 423, 459, 600, 938, 1499
HpyF3I	CTNAG	6 cut(s)	849, 1146, 1454, 1725, 1908, 2122
HpySE526I	ACGT	6 cut(s)	87, 423, 459, 600, 938, 1499
Hsp92I	GRCGYC	1 cut(s)	1994
Hsp92II	CATG	5 cut(s)	659, 1221, 1526, 1592, 1892
HspAI	GCGC	3 cut(s)	92, 330, 1659
Kpn2I	TCCGGA	1 cut(s)	189
Ksp22I	TGATCA	1 cut(s)	1188
KspI	CCGCGG	2 cut(s)	12, 1494
Kzo9I	GATC	8 cut(s)	305, 312, 513, 943, 1053, 1188, 1211, 1436
LguI	GCTCTTC	1 cut(s)	669
LmnI	GCTCC	6 cut(s)	73, 283, 363, 466, 1772, 1895
LweI	GCATC	5 cut(s)	628, 1121, 1603, 1815, 2028
MaeI	CTAG	3 cut(s)	560, 1199, 2004
MaeII	ACGT	6 cut(s)	87, 423, 459, 600, 938, 1499
MaeIII	GTNAC	6 cut(s)	27, 115, 1363, 1584, 1618, 1684
MalI	GATC	8 cut(s)	307, 314, 515, 945, 1055, 1190, 1213, 1438
MboI	GATC	8 cut(s)	305, 312, 513, 943, 1053, 1188, 1211, 1436
MboII	GAAGA	9 cut(s)	15, 601, 604, 686, 983, 1323, 1433, 1546, 1995
MflI	RGATCY	3 cut(s)	305, 312, 1211
MhlI	GDGCHC	2 cut(s)	1070, 1467
MlsI	TGGCCA	1 cut(s)	1259
MluCI	AATT	8 cut(s)	172, 566, 589, 1048, 1305, 1560, 1654, 1710
MluNI	TGGCCA	1 cut(s)	1259
MlyI	GAGTC	4 cut(s)	97, 227, 230, 1831
MmeI	TCCRAC	1 cut(s)	108
Mox20I	TGGCCA	1 cut(s)	1259
Mph1103I	ATGCAT	1 cut(s)	2043
MroI	TCCGGA	1 cut(s)	189
MscI	TGGCCA	1 cut(s)	1259
MseI	TTAA	4 cut(s)	726, 1377, 1632, 1814
MslI	CAYNNNNRTG	2 cut(s)	2046, 2141
Msp20I	TGGCCA	1 cut(s)	1259
MspA1I	CMGCKG	3 cut(s)	11, 1493, 1901
MspI	CCGG	6 cut(s)	71, 190, 243, 378, 930, 1965
MspR9I	CCNGG	4 cut(s)	244, 496, 931, 1021
Mva1269I	GAATGC	2 cut(s)	1492, 2032
MvaI	CCWGG	2 cut(s)	496, 1021
MvnI	CGCG	3 cut(s)	11, 1493, 1661
NciI	CCSGG	2 cut(s)	244, 931
NdeII	GATC	8 cut(s)	305, 312, 513, 943, 1053, 1188, 1211, 1436
NheI	GCTAGC	1 cut(s)	1198
NlaIII	CATG	5 cut(s)	659, 1221, 1526, 1592, 1892
NlaIV	GGNNCC	7 cut(s)	585, 1135, 1213, 1594, 1897, 1926, 2145
NmeAIII	GCCGAG	2 cut(s)	843, 2063
NmuCI	GTSAC	3 cut(s)	115, 1363, 1618
NsiI	ATGCAT	1 cut(s)	2043
NspI	RCATGY	1 cut(s)	1221
PagI	TCATGA	1 cut(s)	1522
PaqCI	CACCTGC	1 cut(s)	1727
PceI	AGGCCT	1 cut(s)	59
PciSI	GCTCTTC	1 cut(s)	669
PcsI	WCGNNNNNNNCGW	3 cut(s)	254, 522, 525
PctI	GAATGC	2 cut(s)	1492, 2032
PfeI	GAWTC	9 cut(s)	397, 541, 688, 774, 865, 1033, 1091, 1246, 1730
Pfl23II	CGTACG	1 cut(s)	939
PinAI	ACCGGT	1 cut(s)	1964
Ple19I	CGATCG	1 cut(s)	946
PleI	GAGTC	4 cut(s)	97, 227, 229, 1831
PpsI	GAGTC	4 cut(s)	97, 227, 229, 1831
Psp1406I	AACGTT	1 cut(s)	1499
Psp6I	CCWGG	2 cut(s)	494, 1019
PspFI	CCCAGC	2 cut(s)	1298, 1676
PspGI	CCWGG	2 cut(s)	494, 1019
PspLI	CGTACG	1 cut(s)	939
PspN4I	GGNNCC	7 cut(s)	585, 1135, 1213, 1594, 1897, 1926, 2145
PspPI	GGNCC	3 cut(s)	76, 187, 1134
PsrI	GAACNNNNNNTAC	2 cut(s)	743, 775
PstI	CTGCAG	3 cut(s)	486, 653, 1519
PstNI	CAGNNNCTG	4 cut(s)	106, 719, 1808, 1954
PsuI	RGATCY	3 cut(s)	305, 312, 1211
PvuI	CGATCG	1 cut(s)	946
RsaI	GTAC	6 cut(s)	99, 302, 941, 985, 1105, 1969
RsaNI	GTAC	6 cut(s)	98, 301, 940, 984, 1104, 1968
RseI	CAYNNNNRTG	2 cut(s)	2046, 2141
SacII	CCGCGG	2 cut(s)	12, 1494
SalI	GTCGAC	2 cut(s)	247, 2032
SapI	GCTCTTC	1 cut(s)	669
SaqAI	TTAA	4 cut(s)	726, 1377, 1632, 1814
Sau3AI	GATC	8 cut(s)	305, 312, 513, 943, 1053, 1188, 1211, 1436
Sau96I	GGNCC	3 cut(s)	76, 187, 1134
SchI	GAGTC	4 cut(s)	97, 227, 230, 1831
ScrFI	CCNGG	4 cut(s)	244, 496, 931, 1021
SduI	GDGCHC	2 cut(s)	1070, 1467
SfaNI	GCATC	5 cut(s)	628, 1121, 1603, 1815, 2028
SfcI	CTRYAG	6 cut(s)	482, 649, 711, 1230, 1515, 1776
Sfr303I	CCGCGG	2 cut(s)	12, 1494
SgrBI	CCGCGG	2 cut(s)	12, 1494
SgrDI	CGTCGACG	1 cut(s)	2032
SinI	GGWCC	2 cut(s)	76, 187
SmiMI	CAYNNNNRTG	2 cut(s)	2046, 2141
SmlI	CTYRAG	2 cut(s)	278, 1874
SmoI	CTYRAG	2 cut(s)	278, 1874
Sse9I	AATT	8 cut(s)	172, 566, 589, 1048, 1305, 1560, 1654, 1710
SseBI	AGGCCT	1 cut(s)	59
SspMI	CTAG	3 cut(s)	560, 1199, 2004
StuI	AGGCCT	1 cut(s)	59
StyD4I	CCNGG	4 cut(s)	242, 494, 929, 1019
StyI	CCWWGG	2 cut(s)	1569, 1841
TaaI	ACNGT	3 cut(s)	715, 1103, 1280
TaiI	ACGT	6 cut(s)	90, 426, 462, 603, 941, 1502
TaqII	GACCGA	1 cut(s)	103
TasI	AATT	8 cut(s)	172, 566, 589, 1048, 1305, 1560, 1654, 1710
TatI	WGTACW	4 cut(s)	97, 300, 983, 1103
TauI	GCSGC	7 cut(s)	14, 37, 242, 1493, 1496, 1901, 1994
TfiI	GAWTC	9 cut(s)	397, 541, 688, 774, 865, 1033, 1091, 1246, 1730
Tru1I	TTAA	4 cut(s)	726, 1377, 1632, 1814
Tru9I	TTAA	4 cut(s)	726, 1377, 1632, 1814
TscAI	CASTG	5 cut(s)	720, 1067, 1075, 1809, 2130
TseFI	GTSAC	3 cut(s)	115, 1363, 1618
Tsp45I	GTSAC	3 cut(s)	115, 1363, 1618
TspDTI	ATGAA	4 cut(s)	579, 1276, 1434, 1511
TspGWI	ACGGA	1 cut(s)	184
TspRI	CASTG	5 cut(s)	720, 1067, 1075, 1809, 2130
VneI	GTGCAC	1 cut(s)	1066
VpaK11BI	GGWCC	2 cut(s)	76, 187
XapI	RAATTY	4 cut(s)	172, 566, 589, 1048
XceI	RCATGY	1 cut(s)	1221
XmiI	GTMKAC	2 cut(s)	248, 2033
XspI	CTAG	3 cut(s)	560, 1199, 2004
Zsp2I	ATGCAT	1 cut(s)	2043

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.