Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005921.1

Orthogroup ID

OG0015804

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1928

Gene Structure 1928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005921.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

atgtcctcctccacagccaatgccaaggccgtgcctggccgctccgcctccgtctacagcgaagtccaaaccagccgtctcgacgttctccttcccctcccctccgtcctcaaagcccccttctccgtcgtcgatggcccgaaaagctccgccgccggaaatccagatgagattgccaagttgttccctaacctattcggccagccctcggcgtcgctaaacgccggggatgcttcatcggctctgtcaaaggataagagtttgaagatcggagttgttctctccggtggacaagcacccggtggacacaatgtgatttctgggattttcgattacttgcagcagcgtactactggaagcataatgtatggatttaggggcggtccggccggagtgatgaagggaaagtatgtcgaattgtcaaccgagtatgtgtatccatacagaaatcagccaattaaggtagactctcttgacatgcagggcggctttgacatgattgctagtggcagagacaagattgaaactccagaacagtttcagcaagctgcagatacagcgaacaagcttgatttagatgggcttgtggtcattggtggggatgactcaaatactaatgcttgccttcttgctgagaacttcaggggtaaaaatttgaagacacgggttattggatgtccaaaaaccattgatggtgatctgaaatgcaaagaggtgcctacaagttttggatttgacacagcatgcagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0008443 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0015979 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0042221 GO:0044237 GO:0044238 GO:0044262 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046835 GO:0047334 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00051 ko01100 ko01110 ko01120 ko01130 map00010 map00030 map00051 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

PFK

Protein Analysis

250

Amino Acids

26.35

Weight (kDa)

6.59

Isoelectric Point (pI)

36.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04040
fragaria_vesca	FvH4_6g42470
malus_domestica	MD09G1112800.v1.1
prunus_persica	Prupe.3G211800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0158381 RchiOBHm_Chr4g0419181
rosa_laevigata	RLG00000021081
rosa_multiflora	Rmu_sc0001826.1_g000016 Rmu_sc0005921.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091450
rosa_rugosa	Rorug02G0467400
rosa_samantha	Rh2DG556900 Rh4DG218400
rosa_wichuraiana	Rw2G044220 Rw4G018730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	715
AccBSI	CCGCTC	1 cut(s)	42
AccI	GTMKAC	2 cut(s)	54, 465
AciI	CCGC	6 cut(s)	40, 45, 150, 153, 381, 486
AcoI	YGGCCR	3 cut(s)	37, 199, 387
AcsI	RAATTY	1 cut(s)	652
AcuI	CTGAAG	1 cut(s)	625
AcyI	GRCGYC	1 cut(s)	212
AdeI	CACNNNGTG	2 cut(s)	302, 313
AfaI	GTAC	1 cut(s)	349
AfiI	CCNNNNNNNGG	1 cut(s)	208
AgsI	TTSAA	3 cut(s)	265, 524, 658
AjnI	CCWGG	1 cut(s)	34
AluBI	AGCT	3 cut(s)	147, 548, 568
AluI	AGCT	3 cut(s)	147, 548, 568
Alw26I	GTCTC	2 cut(s)	83, 507
AoxI	GGCC	5 cut(s)	27, 37, 136, 199, 387
ApeKI	GCWGC	3 cut(s)	340, 343, 548
ApoI	RAATTY	1 cut(s)	652
ArsI	GACNNNNNNTTYG	2 cut(s)	61, 93
Asp700I	GAANNNNTTC	1 cut(s)	537
AspS9I	GGNCC	2 cut(s)	137, 383
AsuC2I	CCSGG	2 cut(s)	226, 300
AsuHPI	GGTGA	1 cut(s)	707
AvaII	GGWCC	1 cut(s)	383
BanI	GGYRCC	1 cut(s)	715
BbsI	GAAGAC	1 cut(s)	665
BbvI	GCAGC	3 cut(s)	352, 355, 535
BccI	CCATC	3 cut(s)	128, 572, 686
BceAI	ACGGC	2 cut(s)	14, 60
BciT130I	CCWGG	1 cut(s)	36
BciVI	GTATCC	1 cut(s)	447
BcnI	CCSGG	2 cut(s)	226, 300
BcoDI	GTCTC	2 cut(s)	83, 507
BfaI	CTAG	1 cut(s)	504
BfmI	CTRYAG	2 cut(s)	55, 549
BfuI	GTATCC	1 cut(s)	447
BisI	GCNGC	6 cut(s)	40, 153, 341, 344, 487, 549
BlsI	GCNGC	6 cut(s)	41, 154, 342, 345, 488, 550
Bme1390I	CCNGG	3 cut(s)	36, 226, 300
Bme18I	GGWCC	1 cut(s)	383
BmgT120I	GGNCC	2 cut(s)	137, 383
BmiI	GGNNCC	1 cut(s)	717
BmrFI	CCNGG	3 cut(s)	36, 226, 300
BmsI	GCATC	1 cut(s)	220
BpiI	GAAGAC	1 cut(s)	665
BplI	GAGNNNNNCTC	2 cut(s)	264, 296
BpmI	CTGGAG	1 cut(s)	513
BpuMI	CCSGG	2 cut(s)	226, 300
BsaBI	GATNNNNATC	1 cut(s)	696
BsaHI	GRCGYC	1 cut(s)	212
BsaJI	CCNNGG	3 cut(s)	24, 207, 225
BsaWI	WCCGGW	1 cut(s)	284
Bsc4I	CCNNNNNNNGG	1 cut(s)	208
Bse1I	ACTGG	1 cut(s)	358
Bse8I	GATNNNNATC	1 cut(s)	696
BseBI	CCWGG	1 cut(s)	36
BseDI	CCNNGG	3 cut(s)	24, 207, 225
BseGI	GGATG	3 cut(s)	235, 607, 680
BseJI	GATNNNNATC	1 cut(s)	696
BseLI	CCNNNNNNNGG	1 cut(s)	208
BseMII	CTCAG	1 cut(s)	624
BseNI	ACTGG	1 cut(s)	358
BseX3I	CGGCCG	1 cut(s)	387
BseXI	GCAGC	3 cut(s)	352, 355, 535
Bsh1285I	CGRYCG	1 cut(s)	390
BshFI	GGCC	5 cut(s)	29, 39, 138, 201, 389
BshNI	GGYRCC	1 cut(s)	715
BsiEI	CGRYCG	1 cut(s)	390
BsiSI	CCGG	6 cut(s)	156, 225, 285, 300, 386, 390
BslI	CCNNNNNNNGG	1 cut(s)	208
BsmAI	GTCTC	2 cut(s)	83, 507
BsmBI	CGTCTC	1 cut(s)	83
BsnI	GGCC	5 cut(s)	29, 39, 138, 201, 389
Bsp143I	GATC	2 cut(s)	267, 697
BspACI	CCGC	6 cut(s)	40, 45, 150, 153, 381, 486
BspANI	GGCC	5 cut(s)	29, 39, 138, 201, 389
BspCNI	CTCAG	1 cut(s)	625
BspLI	GGNNCC	1 cut(s)	717
BspMAI	CTGCAG	1 cut(s)	553
BspT107I	GGYRCC	1 cut(s)	715
BsrBI	CCGCTC	1 cut(s)	42
BsrI	ACTGG	1 cut(s)	358
BssECI	CCNNGG	3 cut(s)	24, 207, 225
BssMI	GATC	2 cut(s)	267, 697
BssNI	GRCGYC	1 cut(s)	212
BssT1I	CCWWGG	1 cut(s)	24
Bst2UI	CCWGG	1 cut(s)	36
Bst4CI	ACNGT	1 cut(s)	537
BstACI	GRCGYC	1 cut(s)	212
BstC8I	GCNNGC	4 cut(s)	203, 546, 622, 745
BstDEI	CTNAG	1 cut(s)	633
BstF5I	GGATG	3 cut(s)	235, 607, 680
BstKTI	GATC	2 cut(s)	270, 700
BstMAI	GTCTC	2 cut(s)	83, 507
BstMBI	GATC	2 cut(s)	267, 697
BstMCI	CGRYCG	1 cut(s)	390
BstMWI	GCNNNNNNNGC	4 cut(s)	144, 230, 239, 557
BstNI	CCWGG	1 cut(s)	36
BstNSI	RCATGY	2 cut(s)	481, 747
BstSCI	CCNGG	3 cut(s)	34, 224, 298
BstSFI	CTRYAG	2 cut(s)	55, 549
BstV1I	GCAGC	3 cut(s)	352, 355, 535
BstV2I	GAAGAC	1 cut(s)	665
BstZI	CGGCCG	1 cut(s)	387
BsuI	GTATCC	1 cut(s)	447
BsuRI	GGCC	5 cut(s)	29, 39, 138, 201, 389
BtsCI	GGATG	3 cut(s)	235, 607, 680
Cac8I	GCNNGC	4 cut(s)	203, 546, 622, 745
Cfr13I	GGNCC	2 cut(s)	137, 383
CpoI	CGGWCCG	1 cut(s)	383
CseI	GACGC	1 cut(s)	201
Csp6I	GTAC	1 cut(s)	348
CspI	CGGWCCG	1 cut(s)	383
CviAII	CATG	3 cut(s)	478, 496, 744
CviQI	GTAC	1 cut(s)	348
DdeI	CTNAG	1 cut(s)	633
DpnI	GATC	2 cut(s)	269, 699
DpnII	GATC	2 cut(s)	267, 697
DraIII	CACNNNGTG	2 cut(s)	302, 313
EaeI	YGGCCR	3 cut(s)	37, 199, 387
EagI	CGGCCG	1 cut(s)	387
EciI	GGCGGA	2 cut(s)	34, 139
EclXI	CGGCCG	1 cut(s)	387
Eco130I	CCWWGG	1 cut(s)	24
Eco47I	GGWCC	1 cut(s)	383
Eco52I	CGGCCG	1 cut(s)	387
Eco57I	CTGAAG	1 cut(s)	625
EcoRII	CCWGG	1 cut(s)	34
EcoT14I	CCWWGG	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	24
Esp3I	CGTCTC	1 cut(s)	83
FaeI	CATG	3 cut(s)	481, 499, 747
FaiI	YATR	8 cut(s)	362, 369, 411, 432, 442, 479, 497, 745
FatI	CATG	3 cut(s)	477, 495, 743
FblI	GTMKAC	2 cut(s)	54, 465
Fnu4HI	GCNGC	6 cut(s)	40, 153, 341, 344, 487, 549
FokI	GGATG	3 cut(s)	242, 614, 687
Fsp4HI	GCNGC	6 cut(s)	40, 153, 341, 344, 487, 549
FspBI	CTAG	1 cut(s)	504
GluI	GCNGC	6 cut(s)	40, 153, 341, 344, 487, 549
GsuI	CTGGAG	1 cut(s)	513
HaeIII	GGCC	5 cut(s)	29, 39, 138, 201, 389
HapII	CCGG	6 cut(s)	156, 225, 285, 300, 386, 390
HgaI	GACGC	1 cut(s)	201
Hin1I	GRCGYC	1 cut(s)	212
Hin1II	CATG	3 cut(s)	481, 499, 747
HincII	GTYRAC	1 cut(s)	423
HindII	GTYRAC	1 cut(s)	423
HindIII	AAGCTT	1 cut(s)	566
HinfI	GANTC	2 cut(s)	467, 605
HpaII	CCGG	6 cut(s)	156, 225, 285, 300, 386, 390
HphI	GGTGA	1 cut(s)	707
Hpy166II	GTNNAC	5 cut(s)	55, 290, 305, 423, 466
Hpy188I	TCNGA	2 cut(s)	272, 702
Hpy188III	TCNNGA	4 cut(s)	80, 164, 473, 530
Hpy8I	GTNNAC	5 cut(s)	55, 290, 305, 423, 466
Hpy99I	CGWCG	4 cut(s)	86, 131, 134, 217
HpyAV	CCTTC	4 cut(s)	101, 130, 394, 635
HpyCH4III	ACNGT	1 cut(s)	537
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	5 cut(s)	340, 481, 551, 708, 747
HpyF10VI	GCNNNNNNNGC	4 cut(s)	144, 230, 239, 557
HpyF3I	CTNAG	1 cut(s)	633
HpySE526I	ACGT	1 cut(s)	84
Hsp92I	GRCGYC	1 cut(s)	212
Hsp92II	CATG	3 cut(s)	481, 499, 747
Kzo9I	GATC	2 cut(s)	267, 697
LmnI	GCTCC	2 cut(s)	47, 152
Lsp1109I	GCAGC	3 cut(s)	352, 355, 535
LweI	GCATC	1 cut(s)	220
MaeI	CTAG	1 cut(s)	504
MaeII	ACGT	1 cut(s)	84
MalI	GATC	2 cut(s)	269, 699
MbiI	CCGCTC	1 cut(s)	42
MboI	GATC	2 cut(s)	267, 697
MboII	GAAGA	2 cut(s)	277, 670
MluCI	AATT	3 cut(s)	416, 456, 652
MlyI	GAGTC	2 cut(s)	461, 599
MnlI	CCTC	8 cut(s)	16, 19, 58, 107, 112, 119, 217, 706
MroXI	GAANNNNTTC	1 cut(s)	537
MseI	TTAA	1 cut(s)	459
MspI	CCGG	6 cut(s)	156, 225, 285, 300, 386, 390
MspR9I	CCNGG	3 cut(s)	36, 226, 300
MvaI	CCWGG	1 cut(s)	36
MwoI	GCNNNNNNNGC	4 cut(s)	144, 230, 239, 557
NciI	CCSGG	2 cut(s)	226, 300
NdeII	GATC	2 cut(s)	267, 697
NlaIII	CATG	3 cut(s)	481, 499, 747
NlaIV	GGNNCC	1 cut(s)	717
NmeAIII	GCCGAG	1 cut(s)	188
NspI	RCATGY	2 cut(s)	481, 747
PaeI	GCATGC	1 cut(s)	747
PdmI	GAANNNNTTC	1 cut(s)	537
PkrI	GCNGC	6 cut(s)	41, 154, 342, 345, 488, 550
PleI	GAGTC	2 cut(s)	461, 599
PpsI	GAGTC	2 cut(s)	461, 599
Psp6I	CCWGG	1 cut(s)	34
PspGI	CCWGG	1 cut(s)	34
PspN4I	GGNNCC	1 cut(s)	717
PspPI	GGNCC	2 cut(s)	137, 383
PstI	CTGCAG	1 cut(s)	553
RsaI	GTAC	1 cut(s)	349
RsaNI	GTAC	1 cut(s)	348
Rsr2I	CGGWCCG	1 cut(s)	383
RsrII	CGGWCCG	1 cut(s)	383
SaqAI	TTAA	1 cut(s)	459
SatI	GCNGC	6 cut(s)	40, 153, 341, 344, 487, 549
Sau3AI	GATC	2 cut(s)	267, 697
Sau96I	GGNCC	2 cut(s)	137, 383
SchI	GAGTC	2 cut(s)	461, 599
ScrFI	CCNGG	3 cut(s)	36, 226, 300
SetI	ASST	7 cut(s)	87, 149, 195, 465, 550, 570, 717
SfaNI	GCATC	1 cut(s)	220
SfcI	CTRYAG	2 cut(s)	55, 549
SinI	GGWCC	1 cut(s)	383
SphI	GCATGC	1 cut(s)	747
Sse9I	AATT	3 cut(s)	416, 456, 652
SsiI	CCGC	6 cut(s)	40, 45, 150, 153, 381, 486
SspMI	CTAG	1 cut(s)	504
StyD4I	CCNGG	3 cut(s)	34, 224, 298
StyI	CCWWGG	1 cut(s)	24
TaaI	ACNGT	1 cut(s)	537
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	4 cut(s)	81, 132, 330, 414
TasI	AATT	3 cut(s)	416, 456, 652
TauI	GCSGC	3 cut(s)	42, 155, 489
Tru1I	TTAA	1 cut(s)	459
Tru9I	TTAA	1 cut(s)	459
TseI	GCWGC	3 cut(s)	340, 343, 548
TspDTI	ATGAA	2 cut(s)	225, 413
TspGWI	ACGGA	3 cut(s)	40, 94, 115
VpaK11BI	GGWCC	1 cut(s)	383
XapI	RAATTY	1 cut(s)	652
XceI	RCATGY	2 cut(s)	481, 747
XmiI	GTMKAC	2 cut(s)	54, 465
XmnI	GAANNNNTTC	1 cut(s)	537
XspI	CTAG	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.