Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004164

Physical Location & Seq

Genomic Coordinates Reverse (-)

59854314 .. 59859133

Gene Structure 4820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0467400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGGTTATGCACAGCTAGTTATTGGCCCTGCAGGCAGTGGCAAGTCCACTTATTGCTCCAGTTTGCACCGACACTGTTTAGATAATGGAAGGACTCTACATATTGTTAACTTGGATCCTGCTGCAGAGCATTTTGACTACCCTGTGGCTTTGGATATCAGGGAGCTTATTAACTTGGATGATGTTATGGAGGAACTTGGACTGGGTCCCAATGGTGGACTTATGTACTGCATGGAACACCTTGAAGATAATCTGGATGATTGGCTTGCGGAGGGGTTGGAGGATTACCTGGATGATGACTACTTAGTTTTTGACTGCCCAGGCCAAATAGAACTTTTTTCTCATGTGCCTATGCTTCGGAACTTTGTGGACCATTTAAAGAGCAAGAGTTTCAACGTTTGTGCCGTATACTTGCTTGATTCACAGTTCATGACCGATGTGACCAAGTTTATCAGTGGGTGCATGGCATCTCTTTCTGCAATGGTTCAACTTGAATTACCGCATGTTAACATTCTCTCCAAAATGGATCTTGTGACGAACAAAAAGGATATTGAAGATTTCTTGAATCCAGAGCCCCAATTTTTGTTGTCAGAGTTGAACAAACGCATGGCTCCTCAATTTGCAAAGCTTAACAAGTCTTTGATGGAACTGGTTGACGATTATAGCATGGTGAGTTTTGTGCCACTTGACTTGAGGAAGGAGAGCAGCATAAAATATGTATTGGCTCAAATTGATACCTCGATTCAGTTCGGAGAAGATGCTGATGTGAAGGTTAAGGATTTTGATCCAGAAGATCCAGAAAACGACAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0008443 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0015979 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0042221 GO:0044237 GO:0044238 GO:0044262 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046835 GO:0047334 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00051 ko01100 ko01110 ko01120 ko01130 map00010 map00030 map00051 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

PFK

Protein Analysis

270

Amino Acids

30.48

Weight (kDa)

4.35

Isoelectric Point (pI)

41.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP_bind_1	PF03029	7 - 249	3.2e-85	Conserved hypothetical ATP binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08000
fragaria_vesca	FvH4_6g42480 FvH4_6g42480
malus_domestica	MD09G1112700.v1.1 MD17G1102800.v1.1
prunus_persica	Prupe.3G211900_v2.0.a1 Prupe.3G211900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0158391 RchiOBHm_Chr4g0419191
rosa_laevigata	RLG00000021082
rosa_roxburghii	Rroxscaffold_2G00091440
rosa_rugosa	Rorug02G0467400 Rorug02G0467500 Rorug02G0467600 Rorug02G0467700 Rorug02G0467900 Rorug02G0468000 Rorug02G0468100
rosa_samantha	Rh2AG533800 Rh2AG534400 Rh2BG547500 Rh2BG547900 Rh2CG517800 Rh2CG518200 Rh2DG557100 Rh2DG557500 Rh4AG219500 Rh4BG221000 Rh4DG218500
rosa_wichuraiana	Rw2G044180 Rw2G044230 Rw2G044260 Rw4G018740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	408
AciI	CCGC	2 cut(s)	269, 500
AclI	AACGTT	1 cut(s)	396
AclWI	GGATC	5 cut(s)	110, 123, 534, 779, 788
AfaI	GTAC	1 cut(s)	227
AfiI	CCNNNNNNNGG	1 cut(s)	215
AgsI	TTSAA	7 cut(s)	245, 394, 488, 494, 554, 565, 598
AjnI	CCWGG	2 cut(s)	288, 319
AluBI	AGCT	4 cut(s)	16, 166, 628, 810
AluI	AGCT	4 cut(s)	16, 166, 628, 810
AlwI	GGATC	5 cut(s)	110, 123, 534, 779, 788
AoxI	GGCC	2 cut(s)	25, 322
ApeKI	GCWGC	2 cut(s)	122, 705
AspS9I	GGNCC	3 cut(s)	26, 206, 370
AsuHPI	GGTGA	1 cut(s)	682
AvaII	GGWCC	2 cut(s)	206, 370
BamHI	GGATCC	1 cut(s)	115
BanII	GRGCYC	1 cut(s)	576
BbvI	GCAGC	2 cut(s)	109, 717
BccI	CCATC	1 cut(s)	637
BceAI	ACGGC	1 cut(s)	389
BciT130I	CCWGG	2 cut(s)	290, 321
BfaI	CTAG	1 cut(s)	17
BfmI	CTRYAG	2 cut(s)	30, 123
BglI	GCCNNNNNGGC	1 cut(s)	33
BisI	GCNGC	2 cut(s)	123, 706
BlsI	GCNGC	2 cut(s)	124, 707
Bme1390I	CCNGG	2 cut(s)	290, 321
Bme18I	GGWCC	2 cut(s)	206, 370
BmgT120I	GGNCC	3 cut(s)	26, 206, 370
BmiI	GGNNCC	4 cut(s)	117, 207, 208, 612
BmrFI	CCNGG	2 cut(s)	290, 321
BmrI	ACTGGG	1 cut(s)	212
BmsI	GCATC	2 cut(s)	476, 748
BmuI	ACTGGG	1 cut(s)	212
BpmI	CTGGAG	1 cut(s)	43
BpuEI	CTTGAG	1 cut(s)	712
BsaBI	GATNNNNATC	1 cut(s)	783
BsaJI	CCNNGG	1 cut(s)	319
BsaXI	ACNNNNNCTCC	2 cut(s)	500, 530
Bsc4I	CCNNNNNNNGG	1 cut(s)	215
Bse1I	ACTGG	3 cut(s)	60, 207, 654
Bse3DI	GCAATG	1 cut(s)	486
Bse8I	GATNNNNATC	1 cut(s)	783
BseBI	CCWGG	2 cut(s)	290, 321
BseDI	CCNNGG	1 cut(s)	319
BseGI	GGATG	3 cut(s)	184, 262, 298
BseJI	GATNNNNATC	1 cut(s)	783
BseLI	CCNNNNNNNGG	1 cut(s)	215
BseMI	GCAATG	1 cut(s)	486
BseNI	ACTGG	3 cut(s)	60, 207, 654
BseRI	GAGGAG	1 cut(s)	603
BseXI	GCAGC	2 cut(s)	109, 717
BshFI	GGCC	2 cut(s)	27, 324
BslFI	GGGAC	1 cut(s)	192
BslI	CCNNNNNNNGG	1 cut(s)	215
BsmFI	GGGAC	1 cut(s)	192
BsnI	GGCC	2 cut(s)	27, 324
Bsp1286I	GDGCHC	1 cut(s)	576
Bsp143I	GATC	4 cut(s)	115, 526, 784, 793
BspACI	CCGC	2 cut(s)	269, 500
BspANI	GGCC	2 cut(s)	27, 324
BspHI	TCATGA	1 cut(s)	429
BspLI	GGNNCC	4 cut(s)	117, 207, 208, 612
BspMAI	CTGCAG	2 cut(s)	34, 127
BspPI	GGATC	5 cut(s)	110, 123, 534, 779, 788
BsrDI	GCAATG	1 cut(s)	486
BsrI	ACTGG	3 cut(s)	60, 207, 654
BssECI	CCNNGG	1 cut(s)	319
BssMI	GATC	4 cut(s)	115, 526, 784, 793
BssNAI	GTATAC	1 cut(s)	409
Bst1107I	GTATAC	1 cut(s)	409
Bst2UI	CCWGG	2 cut(s)	290, 321
Bst4CI	ACNGT	2 cut(s)	77, 426
BstC8I	GCNNGC	2 cut(s)	34, 267
BstDEI	CTNAG	1 cut(s)	304
BstF5I	GGATG	3 cut(s)	184, 262, 298
BstKTI	GATC	4 cut(s)	118, 529, 787, 796
BstMBI	GATC	4 cut(s)	115, 526, 784, 793
BstMWI	GCNNNNNNNGC	1 cut(s)	33
BstNI	CCWGG	2 cut(s)	290, 321
BstNSI	RCATGY	1 cut(s)	506
BstSCI	CCNGG	2 cut(s)	288, 319
BstSFI	CTRYAG	2 cut(s)	30, 123
BstV1I	GCAGC	2 cut(s)	109, 717
BstX2I	RGATCY	3 cut(s)	115, 526, 793
BstYI	RGATCY	3 cut(s)	115, 526, 793
BstZ17I	GTATAC	1 cut(s)	409
BsuRI	GGCC	2 cut(s)	27, 324
BtsCI	GGATG	3 cut(s)	184, 262, 298
BtsI	GCAGTG	1 cut(s)	43
BtsIMutI	CAGTG	3 cut(s)	43, 73, 460
Cac8I	GCNNGC	2 cut(s)	34, 267
CciI	TCATGA	1 cut(s)	429
Cfr13I	GGNCC	3 cut(s)	26, 206, 370
Csp6I	GTAC	1 cut(s)	226
CspCI	CAANNNNNGTGG	2 cut(s)	672, 707
CviAII	CATG	7 cut(s)	232, 344, 430, 463, 503, 607, 667
CviQI	GTAC	1 cut(s)	226
DdeI	CTNAG	1 cut(s)	304
DpnI	GATC	4 cut(s)	117, 528, 786, 795
DpnII	GATC	4 cut(s)	115, 526, 784, 793
DraI	TTTAAA	1 cut(s)	378
Eco24I	GRGCYC	1 cut(s)	576
Eco32I	GATATC	1 cut(s)	157
Eco47I	GGWCC	2 cut(s)	206, 370
EcoO109I	RGGNCCY	1 cut(s)	206
EcoRII	CCWGG	2 cut(s)	288, 319
EcoRV	GATATC	1 cut(s)	157
EcoT38I	GRGCYC	1 cut(s)	576
FaeI	CATG	7 cut(s)	235, 347, 433, 466, 506, 610, 670
FaqI	GGGAC	1 cut(s)	192
FatI	CATG	7 cut(s)	231, 343, 429, 462, 502, 606, 666
FblI	GTMKAC	1 cut(s)	408
Fnu4HI	GCNGC	2 cut(s)	123, 706
FokI	GGATG	3 cut(s)	191, 269, 305
FriOI	GRGCYC	1 cut(s)	576
Fsp4HI	GCNGC	2 cut(s)	123, 706
FspBI	CTAG	1 cut(s)	17
GluI	GCNGC	2 cut(s)	123, 706
GsuI	CTGGAG	1 cut(s)	43
HaeIII	GGCC	2 cut(s)	27, 324
Hin1II	CATG	7 cut(s)	235, 347, 433, 466, 506, 610, 670
HincII	GTYRAC	3 cut(s)	109, 508, 655
HindII	GTYRAC	3 cut(s)	109, 508, 655
HindIII	AAGCTT	1 cut(s)	626
HinfI	GANTC	4 cut(s)	94, 419, 565, 742
HpaI	GTTAAC	2 cut(s)	109, 508
HphI	GGTGA	1 cut(s)	682
Hpy166II	GTNNAC	7 cut(s)	48, 109, 218, 370, 409, 508, 655
Hpy188I	TCNGA	3 cut(s)	360, 592, 752
Hpy188III	TCNNGA	6 cut(s)	254, 430, 562, 569, 788, 797
Hpy8I	GTNNAC	7 cut(s)	48, 109, 218, 370, 409, 508, 655
HpyAV	CCTTC	3 cut(s)	84, 691, 763
HpyCH4III	ACNGT	2 cut(s)	77, 426
HpyCH4IV	ACGT	1 cut(s)	396
HpyCH4V	TGCA	8 cut(s)	11, 32, 67, 125, 231, 462, 479, 623
HpyF10VI	GCNNNNNNNGC	1 cut(s)	33
HpyF3I	CTNAG	1 cut(s)	304
HpySE526I	ACGT	1 cut(s)	396
Hsp92II	CATG	7 cut(s)	235, 347, 433, 466, 506, 610, 670
KflI	GGGWCCC	1 cut(s)	206
KspAI	GTTAAC	2 cut(s)	109, 508
Kzo9I	GATC	4 cut(s)	115, 526, 784, 793
LmnI	GCTCC	3 cut(s)	62, 163, 616
Lsp1109I	GCAGC	2 cut(s)	109, 717
LweI	GCATC	2 cut(s)	476, 748
MaeI	CTAG	1 cut(s)	17
MaeII	ACGT	1 cut(s)	396
MaeIII	GTNAC	2 cut(s)	439, 532
MalI	GATC	4 cut(s)	117, 528, 786, 795
MboI	GATC	4 cut(s)	115, 526, 784, 793
MboII	GAAGA	4 cut(s)	257, 566, 767, 803
MflI	RGATCY	3 cut(s)	115, 526, 793
MhlI	GDGCHC	1 cut(s)	576
MluCI	AATT	4 cut(s)	494, 578, 617, 729
MlyI	GAGTC	1 cut(s)	88
MmeI	TCCRAC	1 cut(s)	258
MnlI	CCTC	6 cut(s)	184, 265, 274, 624, 687, 748
MseI	TTAA	6 cut(s)	108, 171, 377, 507, 630, 774
MspA1I	CMGCKG	1 cut(s)	810
MspR9I	CCNGG	2 cut(s)	290, 321
MvaI	CCWGG	2 cut(s)	290, 321
MwoI	GCNNNNNNNGC	1 cut(s)	33
NdeII	GATC	4 cut(s)	115, 526, 784, 793
NlaIII	CATG	7 cut(s)	235, 347, 433, 466, 506, 610, 670
NlaIV	GGNNCC	4 cut(s)	117, 207, 208, 612
NmuCI	GTSAC	2 cut(s)	439, 532
NspI	RCATGY	1 cut(s)	506
PagI	TCATGA	1 cut(s)	429
PcsI	WCGNNNNNNNCGW	1 cut(s)	402
PfeI	GAWTC	3 cut(s)	419, 565, 742
PflFI	GACNNNGTC	1 cut(s)	204
PkrI	GCNGC	2 cut(s)	124, 707
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
PpuMI	RGGWCCY	1 cut(s)	206
Psp1406I	AACGTT	1 cut(s)	396
Psp5II	RGGWCCY	1 cut(s)	206
Psp6I	CCWGG	2 cut(s)	288, 319
PspGI	CCWGG	2 cut(s)	288, 319
PspN4I	GGNNCC	4 cut(s)	117, 207, 208, 612
PspPI	GGNCC	3 cut(s)	26, 206, 370
PspPPI	RGGWCCY	1 cut(s)	206
PstI	CTGCAG	2 cut(s)	34, 127
PsuI	RGATCY	3 cut(s)	115, 526, 793
PsyI	GACNNNGTC	1 cut(s)	204
PvuII	CAGCTG	1 cut(s)	810
RsaI	GTAC	1 cut(s)	227
RsaNI	GTAC	1 cut(s)	226
SaqAI	TTAA	6 cut(s)	108, 171, 377, 507, 630, 774
SatI	GCNGC	2 cut(s)	123, 706
Sau3AI	GATC	4 cut(s)	115, 526, 784, 793
Sau96I	GGNCC	3 cut(s)	26, 206, 370
SbfI	CCTGCAGG	1 cut(s)	34
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	2 cut(s)	290, 321
SdaI	CCTGCAGG	1 cut(s)	34
SduI	GDGCHC	1 cut(s)	576
SetI	ASST	9 cut(s)	18, 168, 243, 291, 399, 630, 740, 774, 812
SfaNI	GCATC	2 cut(s)	476, 748
SfcI	CTRYAG	2 cut(s)	30, 123
SinI	GGWCC	2 cut(s)	206, 370
SmlI	CTYRAG	1 cut(s)	691
SmoI	CTYRAG	1 cut(s)	691
Sse8387I	CCTGCAGG	1 cut(s)	34
Sse9I	AATT	4 cut(s)	494, 578, 617, 729
SsiI	CCGC	2 cut(s)	269, 500
SspMI	CTAG	1 cut(s)	17
StyD4I	CCNGG	2 cut(s)	288, 319
TaaI	ACNGT	2 cut(s)	77, 426
TaiI	ACGT	1 cut(s)	399
TaqI	TCGA	1 cut(s)	740
TaqII	GACCGA	1 cut(s)	449
TasI	AATT	4 cut(s)	494, 578, 617, 729
TatI	WGTACW	1 cut(s)	225
TfiI	GAWTC	3 cut(s)	419, 565, 742
Tru1I	TTAA	6 cut(s)	108, 171, 377, 507, 630, 774
Tru9I	TTAA	6 cut(s)	108, 171, 377, 507, 630, 774
TscAI	CASTG	3 cut(s)	43, 80, 460
TseFI	GTSAC	2 cut(s)	439, 532
TseI	GCWGC	2 cut(s)	122, 705
Tsp45I	GTSAC	2 cut(s)	439, 532
TspDTI	ATGAA	1 cut(s)	418
TspRI	CASTG	3 cut(s)	43, 80, 460
Tth111I	GACNNNGTC	1 cut(s)	204
VpaK11BI	GGWCC	2 cut(s)	206, 370
XceI	RCATGY	1 cut(s)	506
XmiI	GTMKAC	1 cut(s)	408
XspI	CTAG	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.