Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004164

Physical Location & Seq

Genomic Coordinates Forward (+)

59863837 .. 59869030

Gene Structure 5194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0467600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGAAGGCGGCAGCAGCATCAGCAACCTTGAACCATCCCATTCGTCTCTACCCATCACCCATTTCCCGCCAAATCGACTTCCCGGCTCGACGGTCTCAACCTCTCACACACAACTCCGGCAAAGGGTTGAAATTGTACCGAAATGAGTCTGTGTGCTCCGTTTCTAGTGTAATTTGTGCTGTCAATGGAGGTCAGGGAGGGTATGTCTCTGCGTGGGACGAGAAACCATATGAGTTTCTTCCGAATGGGAAAAGGGCTTACTTGGATGAACAAGATGTGGTCACGTTCCTTGATCCTCCTAAAGAGTTGATTCCTTTGGACTCGGCTTCTTATAATCCTGCTGCATATCTTTGGAAAAAAATTGATGATGTTCCCCAGGAAAGGCGCCGTCGGCTGCTGCGCTTGCTAGAGCCTAGGCTGATCTCAAGAGCTTGGGAGATAGCTGGCACACGATATGAAGAACCCAAGTTGATGAACAGAAGCTCATCCCAACTGTTGTCTAATGAAGATGGTGTCTCTCTTGAATATTATAATTGCCGAACAAGTGGAGGACCAATGCTCATTTCCTGGATAAACTTTTTCAAAACGGCAACTTTTTCTTGCAAGGATGGGAACGTATATGGACGATTTATTGGTGAAACAATTCTTAATGGACTTGCAAATTCCTTTAGTCCACTGTACTTCGTAGTGAGCCAGCTGAAGGAAGTAATGGCAACTGAACAACCTTGTGATCTAGCATATGAGTTCGGGGATGGGCTGTTTGATCTCCATGAATACCCCGAGGGCTTTCCAAGACCAGTGAAACATCCGTATCCTTTCAACGATCAGGTGGTTGTCTATGTTCGTCATCTAGGACCAGGCGTGTCAGTAGGGCAAGCATGGCAAGAAGGAAAAGCATTACAACAAGTACCACAAAAATTATGTGGTGACATTCTAATGGTAAAAGATTATTCTACTCTTAGAGAAGATCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

324

Amino Acids

36.56

Weight (kDa)

6.54

Isoelectric Point (pI)

48.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08000
fragaria_vesca	FvH4_6g42480 FvH4_6g42480
malus_domestica	MD09G1112700.v1.1 MD17G1102800.v1.1
prunus_persica	Prupe.3G211900_v2.0.a1 Prupe.3G211900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0158391 RchiOBHm_Chr4g0419191
rosa_laevigata	RLG00000021082
rosa_roxburghii	Rroxscaffold_2G00091440
rosa_rugosa	Rorug02G0467400 Rorug02G0467500 Rorug02G0467600 Rorug02G0467700 Rorug02G0467900 Rorug02G0468000 Rorug02G0468100
rosa_samantha	Rh2AG533800 Rh2AG534400 Rh2BG547500 Rh2BG547900 Rh2CG517800 Rh2CG518200 Rh2DG557100 Rh2DG557500 Rh4AG219500 Rh4BG221000 Rh4DG218500
rosa_wichuraiana	Rw2G044180 Rw2G044230 Rw2G044260 Rw4G018740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	333, 531
AccB1I	GGYRCC	1 cut(s)	384
AciI	CCGC	2 cut(s)	8, 67
AclWI	GGATC	1 cut(s)	287
AcsI	RAATTY	1 cut(s)	661
AcuI	CTGAAG	1 cut(s)	719
AcyI	GRCGYC	1 cut(s)	385
AfaI	GTAC	3 cut(s)	137, 680, 909
AfiI	CCNNNNNNNGG	3 cut(s)	123, 381, 700
AgsI	TTSAA	5 cut(s)	31, 130, 524, 583, 820
AjnI	CCWGG	3 cut(s)	375, 566, 856
AjuI	GAANNNNNNNTTGG	2 cut(s)	547, 579
AluBI	AGCT	4 cut(s)	431, 443, 483, 697
AluI	AGCT	4 cut(s)	431, 443, 483, 697
Alw21I	GWGCWC	1 cut(s)	158
Alw26I	GTCTC	4 cut(s)	50, 99, 211, 520
AlwI	GGATC	1 cut(s)	287
Ama87I	CYCGRG	1 cut(s)	779
ApeKI	GCWGC	5 cut(s)	11, 14, 341, 394, 397
ApoI	RAATTY	1 cut(s)	661
Asp700I	GAANNNNTTC	1 cut(s)	642
AspA2I	CCTAGG	1 cut(s)	413
AspLEI	GCGC	2 cut(s)	387, 402
AspS9I	GGNCC	2 cut(s)	551, 854
AsuC2I	CCSGG	1 cut(s)	83
AsuHPI	GGTGA	3 cut(s)	48, 647, 938
AvaI	CYCGRG	1 cut(s)	779
AvaII	GGWCC	2 cut(s)	551, 854
AvrII	CCTAGG	1 cut(s)	413
BaeI	ACNNNNGTAYC	2 cut(s)	794, 827
BanI	GGYRCC	1 cut(s)	384
Bbv12I	GWGCWC	1 cut(s)	158
BbvI	GCAGC	5 cut(s)	23, 26, 328, 381, 384
BccI	CCATC	5 cut(s)	42, 61, 503, 602, 746
BceAI	ACGGC	2 cut(s)	372, 603
BciT130I	CCWGG	3 cut(s)	377, 568, 858
BciVI	GTATCC	1 cut(s)	822
BcnI	CCSGG	1 cut(s)	83
BcoDI	GTCTC	4 cut(s)	50, 99, 211, 520
BfaI	CTAG	5 cut(s)	165, 407, 414, 734, 851
BfoI	RGCGCY	1 cut(s)	388
BfuI	GTATCC	1 cut(s)	822
BisI	GCNGC	6 cut(s)	9, 12, 15, 342, 395, 398
BlnI	CCTAGG	1 cut(s)	413
BlsI	GCNGC	6 cut(s)	10, 13, 16, 343, 396, 399
Bme1390I	CCNGG	4 cut(s)	83, 377, 568, 858
Bme18I	GGWCC	2 cut(s)	551, 854
BmeT110I	CYCGRG	1 cut(s)	779
BmgT120I	GGNCC	2 cut(s)	551, 854
BmiI	GGNNCC	1 cut(s)	386
BmrFI	CCNGG	4 cut(s)	83, 377, 568, 858
BmsI	GCATC	1 cut(s)	26
BpuEI	CTTGAG	1 cut(s)	409
BpuMI	CCSGG	1 cut(s)	83
BsaHI	GRCGYC	1 cut(s)	385
BsaI	GGTCTC	1 cut(s)	99
BsaJI	CCNNGG	3 cut(s)	375, 413, 780
BsaXI	ACNNNNNCTCC	2 cut(s)	189, 219
Bsc4I	CCNNNNNNNGG	3 cut(s)	123, 381, 700
Bse1I	ACTGG	1 cut(s)	797
BseBI	CCWGG	3 cut(s)	377, 568, 858
BseDI	CCNNGG	3 cut(s)	375, 413, 780
BseGI	GGATG	6 cut(s)	34, 271, 485, 613, 757, 805
BseLI	CCNNNNNNNGG	3 cut(s)	123, 381, 700
BseNI	ACTGG	1 cut(s)	797
BseXI	GCAGC	5 cut(s)	23, 26, 328, 381, 384
BshNI	GGYRCC	1 cut(s)	384
BsiHKAI	GWGCWC	1 cut(s)	158
BsiHKCI	CYCGRG	1 cut(s)	779
BsiSI	CCGG	2 cut(s)	83, 117
BslFI	GGGAC	1 cut(s)	230
BslI	CCNNNNNNNGG	3 cut(s)	123, 381, 700
BsmAI	GTCTC	4 cut(s)	50, 99, 211, 520
BsmBI	CGTCTC	1 cut(s)	50
BsmFI	GGGAC	1 cut(s)	230
Bso31I	GGTCTC	1 cut(s)	99
BsoBI	CYCGRG	1 cut(s)	779
Bsp1286I	GDGCHC	1 cut(s)	158
Bsp143I	GATC	6 cut(s)	292, 420, 730, 763, 823, 967
BspACI	CCGC	2 cut(s)	8, 67
BspLI	GGNNCC	1 cut(s)	386
BspPI	GGATC	1 cut(s)	287
BspT107I	GGYRCC	1 cut(s)	384
BspTNI	GGTCTC	1 cut(s)	99
BsrI	ACTGG	1 cut(s)	797
BssECI	CCNNGG	3 cut(s)	375, 413, 780
BssMI	GATC	6 cut(s)	292, 420, 730, 763, 823, 967
BssNI	GRCGYC	1 cut(s)	385
BssT1I	CCWWGG	1 cut(s)	413
Bst2UI	CCWGG	3 cut(s)	377, 568, 858
Bst4CI	ACNGT	3 cut(s)	93, 495, 678
BstACI	GRCGYC	1 cut(s)	385
BstC8I	GCNNGC	4 cut(s)	404, 445, 695, 876
BstDEI	CTNAG	1 cut(s)	959
BstF5I	GGATG	6 cut(s)	34, 271, 485, 613, 757, 805
BstH2I	RGCGCY	1 cut(s)	388
BstHHI	GCGC	2 cut(s)	387, 402
BstKTI	GATC	6 cut(s)	295, 423, 733, 766, 826, 970
BstMAI	GTCTC	4 cut(s)	50, 99, 211, 520
BstMBI	GATC	6 cut(s)	292, 420, 730, 763, 823, 967
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 20, 391, 403, 880
BstNI	CCWGG	3 cut(s)	377, 568, 858
BstSCI	CCNGG	4 cut(s)	81, 375, 566, 856
BstV1I	GCAGC	5 cut(s)	23, 26, 328, 381, 384
BsuI	GTATCC	1 cut(s)	822
BtsCI	GGATG	6 cut(s)	34, 271, 485, 613, 757, 805
BtsIMutI	CAGTG	2 cut(s)	674, 804
Cac8I	GCNNGC	4 cut(s)	404, 445, 695, 876
CfoI	GCGC	2 cut(s)	387, 402
Cfr13I	GGNCC	2 cut(s)	551, 854
Csp6I	GTAC	3 cut(s)	136, 679, 908
CviAII	CATG	2 cut(s)	770, 879
CviQI	GTAC	3 cut(s)	136, 679, 908
DdeI	CTNAG	1 cut(s)	959
DinI	GGCGCC	1 cut(s)	386
DpnI	GATC	6 cut(s)	294, 422, 732, 765, 825, 969
DpnII	GATC	6 cut(s)	292, 420, 730, 763, 823, 967
Eco130I	CCWWGG	1 cut(s)	413
Eco31I	GGTCTC	1 cut(s)	99
Eco47I	GGWCC	2 cut(s)	551, 854
Eco57I	CTGAAG	1 cut(s)	719
Eco88I	CYCGRG	1 cut(s)	779
EcoRII	CCWGG	3 cut(s)	375, 566, 856
EcoT14I	CCWWGG	1 cut(s)	413
EgeI	GGCGCC	1 cut(s)	386
EheI	GGCGCC	1 cut(s)	386
ErhI	CCWWGG	1 cut(s)	413
Esp3I	CGTCTC	1 cut(s)	50
FaeI	CATG	2 cut(s)	773, 882
FaqI	GGGAC	1 cut(s)	230
FatI	CATG	2 cut(s)	769, 878
FauI	CCCGC	1 cut(s)	74
FauNDI	CATATG	2 cut(s)	229, 739
Fnu4HI	GCNGC	6 cut(s)	9, 12, 15, 342, 395, 398
FokI	GGATG	6 cut(s)	21, 278, 472, 620, 764, 792
Fsp4HI	GCNGC	6 cut(s)	9, 12, 15, 342, 395, 398
FspBI	CTAG	5 cut(s)	165, 407, 414, 734, 851
GlaI	GCGC	2 cut(s)	386, 401
GluI	GCNGC	6 cut(s)	9, 12, 15, 342, 395, 398
HaeII	RGCGCY	1 cut(s)	388
HapII	CCGG	2 cut(s)	83, 117
HhaI	GCGC	2 cut(s)	387, 402
Hin1I	GRCGYC	1 cut(s)	385
Hin1II	CATG	2 cut(s)	773, 882
Hin6I	GCGC	2 cut(s)	385, 400
HinP1I	GCGC	2 cut(s)	385, 400
HinfI	GANTC	3 cut(s)	146, 310, 320
HpaII	CCGG	2 cut(s)	83, 117
HphI	GGTGA	3 cut(s)	48, 647, 938
Hpy166II	GTNNAC	1 cut(s)	674
Hpy188I	TCNGA	1 cut(s)	243
Hpy188III	TCNNGA	2 cut(s)	426, 521
Hpy8I	GTNNAC	1 cut(s)	674
Hpy99I	CGWCG	2 cut(s)	93, 393
HpyAV	CCTTC	2 cut(s)	694, 881
HpyCH4III	ACNGT	3 cut(s)	93, 495, 678
HpyCH4IV	ACGT	2 cut(s)	284, 615
HpyCH4V	TGCA	3 cut(s)	344, 603, 659
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 20, 391, 403, 880
HpyF3I	CTNAG	1 cut(s)	959
HpySE526I	ACGT	2 cut(s)	284, 615
Hsp92I	GRCGYC	1 cut(s)	385
Hsp92II	CATG	2 cut(s)	773, 882
HspAI	GCGC	2 cut(s)	385, 400
KasI	GGCGCC	1 cut(s)	384
Kzo9I	GATC	6 cut(s)	292, 420, 730, 763, 823, 967
LmnI	GCTCC	1 cut(s)	161
Lsp1109I	GCAGC	5 cut(s)	23, 26, 328, 381, 384
LweI	GCATC	1 cut(s)	26
MaeI	CTAG	5 cut(s)	165, 407, 414, 734, 851
MaeII	ACGT	2 cut(s)	284, 615
MaeIII	GTNAC	2 cut(s)	280, 926
MalI	GATC	6 cut(s)	294, 422, 732, 765, 825, 969
MboI	GATC	6 cut(s)	292, 420, 730, 763, 823, 967
MboII	GAAGA	3 cut(s)	230, 470, 518
MhlI	GDGCHC	1 cut(s)	158
MluCI	AATT	7 cut(s)	131, 171, 360, 532, 642, 661, 917
Mly113I	GGCGCC	1 cut(s)	385
MlyI	GAGTC	2 cut(s)	155, 314
MnlI	CCTC	6 cut(s)	111, 182, 191, 306, 542, 775
MroXI	GAANNNNTTC	1 cut(s)	642
MseI	TTAA	1 cut(s)	648
MslI	CAYNNNNRTG	1 cut(s)	935
MspA1I	CMGCKG	1 cut(s)	697
MspI	CCGG	2 cut(s)	83, 117
MspR9I	CCNGG	4 cut(s)	83, 377, 568, 858
MvaI	CCWGG	3 cut(s)	377, 568, 858
MwoI	GCNNNNNNNGC	5 cut(s)	14, 20, 391, 403, 880
NarI	GGCGCC	1 cut(s)	385
NciI	CCSGG	1 cut(s)	83
NdeI	CATATG	2 cut(s)	229, 739
NdeII	GATC	6 cut(s)	292, 420, 730, 763, 823, 967
NlaIII	CATG	2 cut(s)	773, 882
NlaIV	GGNNCC	1 cut(s)	386
NmeAIII	GCCGAG	1 cut(s)	302
NmuCI	GTSAC	2 cut(s)	280, 926
PdmI	GAANNNNTTC	1 cut(s)	642
PfeI	GAWTC	1 cut(s)	310
PfoI	TCCNGGA	1 cut(s)	566
PkrI	GCNGC	6 cut(s)	10, 13, 16, 343, 396, 399
PleI	GAGTC	2 cut(s)	154, 314
PluTI	GGCGCC	1 cut(s)	388
PpsI	GAGTC	2 cut(s)	154, 314
PsiI	TTATAA	2 cut(s)	333, 531
Psp6I	CCWGG	3 cut(s)	375, 566, 856
PspGI	CCWGG	3 cut(s)	375, 566, 856
PspN4I	GGNNCC	1 cut(s)	386
PspPI	GGNCC	2 cut(s)	551, 854
PvuII	CAGCTG	1 cut(s)	697
RsaI	GTAC	3 cut(s)	137, 680, 909
RsaNI	GTAC	3 cut(s)	136, 679, 908
RseI	CAYNNNNRTG	1 cut(s)	935
SaqAI	TTAA	1 cut(s)	648
SatI	GCNGC	6 cut(s)	9, 12, 15, 342, 395, 398
Sau3AI	GATC	6 cut(s)	292, 420, 730, 763, 823, 967
Sau96I	GGNCC	2 cut(s)	551, 854
SchI	GAGTC	2 cut(s)	155, 314
ScrFI	CCNGG	4 cut(s)	83, 377, 568, 858
SduI	GDGCHC	1 cut(s)	158
SfaNI	GCATC	1 cut(s)	26
SfoI	GGCGCC	1 cut(s)	386
SinI	GGWCC	2 cut(s)	551, 854
SmiMI	CAYNNNNRTG	1 cut(s)	935
SmlI	CTYRAG	1 cut(s)	424
SmoI	CTYRAG	1 cut(s)	424
Sse9I	AATT	7 cut(s)	131, 171, 360, 532, 642, 661, 917
SsiI	CCGC	2 cut(s)	8, 67
SspDI	GGCGCC	1 cut(s)	384
SspI	AATATT	1 cut(s)	527
SspMI	CTAG	5 cut(s)	165, 407, 414, 734, 851
StyD4I	CCNGG	4 cut(s)	81, 375, 566, 856
StyI	CCWWGG	1 cut(s)	413
TaaI	ACNGT	3 cut(s)	93, 495, 678
TaiI	ACGT	2 cut(s)	287, 618
TaqI	TCGA	2 cut(s)	75, 88
TasI	AATT	7 cut(s)	131, 171, 360, 532, 642, 661, 917
TatI	WGTACW	1 cut(s)	678
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	1 cut(s)	310
Tru1I	TTAA	1 cut(s)	648
Tru9I	TTAA	1 cut(s)	648
TscAI	CASTG	2 cut(s)	681, 804
TseFI	GTSAC	2 cut(s)	280, 926
TseI	GCWGC	5 cut(s)	11, 14, 341, 394, 397
Tsp45I	GTSAC	2 cut(s)	280, 926
TspDTI	ATGAA	6 cut(s)	17, 282, 471, 488, 519, 786
TspGWI	ACGGA	2 cut(s)	148, 798
TspRI	CASTG	2 cut(s)	681, 804
VpaK11BI	GGWCC	2 cut(s)	551, 854
XapI	RAATTY	1 cut(s)	661
XmaJI	CCTAGG	1 cut(s)	413
XmnI	GAANNNNTTC	1 cut(s)	642
XspI	CTAG	5 cut(s)	165, 407, 414, 734, 851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.