Rorug02G0468000

Glycine-rich RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004164
Physical Location & Seq
Forward (+)
59891529 .. 59893607
2079 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0468000.1

Sequence Viewer

Length: 1056 bp
ATGGCTGGACGACTGGGGCTACTTGCTTGGGTGATCTTCATCCTGTCCGCTTCAGCAATCGTTAACAACAACTCAGTCCTTCTTCAAGCTGCAGCTCTTACCAATGACATCGGCGCAAACTATCATATCCATAACAGTACTGGTGCTAGCGGTAATTTATCCAAGGTGTTCGAGATTTTGGTCAAATGTGGCGGCATAAGAAATATGAGGGTCTTTTCAGATGAGATCAATGCCCCATATCTAGATTACTATGGAGCCTCCACTGGCATTGCTCTCACTGTTAGCATATCAAATTCTGATGTGCAAAGGTTCGCTGCAAGCTTTGAAGACTTAACCAAGTGGCACCAAGATGTTTTGTATTCCTTACATATCACATTTGATGTCAAGTACATCACTGTTGGTAACGAAGCAATCCCCGGTCCCTCTACCGATGATGTTCTGACCGTAATGAAGTCTGTACAACTGCTGAACAATTATAGCTCTTTTGGGGACATCAAGGTGACAACCTCTGTGGGATCAAGTGTTTTGGGGGATTGGTATCTACCGTCTAGTGGGGAGTTCAAACCAAATGCTAGCAGAGCCATGACTGACATACTTGGATTTCTATCAGCGTCTCAAGCACCTCTCATGATAAATGTGTACCCCTACTATGCATATGCAGCTGATCCGGCCAATGTGCCGCTAGATTATGCACTCTTAAACGCCACCTACCCTATGGTTCATGATGGCTCATTGGAATACAGTAACTTGTTTGATGCAATGGTGGACTCCTTTTACTCTGCCATGGAGAAAGTTGACTACTCAGACGTGAGCATTGTGGTGTCCGAGAGTGGGTGGCCTCGTGATGGGAATTACAACTTCACCACACCGGAACTTGCAGCCACATACAACAGGAATTTCCTGCTACGCATCAGCTCAAAGGTGGGAACACCCAAGAGACCTGGTGCTTCTGTTAAGGGATACATATATGAGCTGTTTGATGGTAAAAGCCCTCACTTTGGACTCTTCGATGAGACCTTTGAACCTATCTATCCTCTGTTCCAGTGTTCCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

351

Amino Acids

38.49

Weight (kDa)

4.78

Isoelectric Point (pI)

28.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 62 - 345 1.9e-51 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 342
AciI CCGC 4 cut(s) 48, 150, 192, 680
AclWI GGATC 2 cut(s) 523, 659
AcoI YGGCCR 1 cut(s) 669
AcsI RAATTY 2 cut(s) 292, 895
AcuI CTGAAG 1 cut(s) 36
AfaI GTAC 4 cut(s) 139, 389, 459, 641
AfiI CCNNNNNNNGG 4 cut(s) 551, 831, 845, 998
AgsI TTSAA 4 cut(s) 86, 326, 562, 1022
AjiI CACGTC 1 cut(s) 808
AjnI CCWGG 1 cut(s) 940
AluBI AGCT 7 cut(s) 89, 95, 321, 480, 662, 915, 973
AluI AGCT 7 cut(s) 89, 95, 321, 480, 662, 915, 973
Alw26I GTCTC 3 cut(s) 618, 931, 1007
AlwI GGATC 2 cut(s) 523, 659
AoxI GGCC 2 cut(s) 669, 836
ApeKI GCWGC 5 cut(s) 89, 92, 314, 659, 878
ApoI RAATTY 2 cut(s) 292, 895
AspLEI GCGC 1 cut(s) 116
AspS9I GGNCC 1 cut(s) 419
AsuC2I CCSGG 1 cut(s) 417
AsuHPI GGTGA 3 cut(s) 43, 511, 853
AsuNHI GCTAGC 2 cut(s) 146, 572
AvaII GGWCC 1 cut(s) 419
BanI GGYRCC 1 cut(s) 342
BauI CACGAG 1 cut(s) 840
BbsI GAAGAC 1 cut(s) 333
BbvI GCAGC 5 cut(s) 76, 104, 301, 671, 890
BccI CCATC 3 cut(s) 719, 839, 974
BciT130I CCWGG 1 cut(s) 942
BciVI GTATCC 1 cut(s) 953
BcnI CCSGG 1 cut(s) 417
BcoDI GTCTC 3 cut(s) 618, 931, 1007
BfaI CTAG 6 cut(s) 147, 242, 549, 573, 683, 1054
BfmI CTRYAG 1 cut(s) 90
BfuI GTATCC 1 cut(s) 953
BisI GCNGC 7 cut(s) 90, 93, 193, 315, 660, 680, 879
BlsI GCNGC 7 cut(s) 91, 94, 194, 316, 661, 681, 880
BmcAI AGTACT 1 cut(s) 139
Bme1390I CCNGG 2 cut(s) 417, 942
Bme18I GGWCC 1 cut(s) 419
BmgBI CACGTC 1 cut(s) 808
BmgT120I GGNCC 1 cut(s) 419
BmiI GGNNCC 3 cut(s) 256, 344, 421
BmrFI CCNGG 2 cut(s) 417, 942
BmrI ACTGGG 1 cut(s) 23
BmsI GCATC 2 cut(s) 745, 918
BmtI GCTAGC 2 cut(s) 150, 576
BmuI ACTGGG 1 cut(s) 23
BpiI GAAGAC 1 cut(s) 333
BpuEI CTTGAG 1 cut(s) 600
BpuMI CCSGG 1 cut(s) 417
BsaBI GATNNNNATC 3 cut(s) 38, 537, 604
BsaI GGTCTC 2 cut(s) 931, 1007
BsaJI CCNNGG 3 cut(s) 162, 415, 783
BsaWI WCCGGW 1 cut(s) 868
Bsc4I CCNNNNNNNGG 4 cut(s) 551, 831, 845, 998
Bse1I ACTGG 4 cut(s) 18, 145, 268, 1042
Bse3DI GCAATG 2 cut(s) 267, 765
Bse8I GATNNNNATC 3 cut(s) 38, 537, 604
BseBI CCWGG 1 cut(s) 942
BseDI CCNNGG 3 cut(s) 162, 415, 783
BseGI GGATG 1 cut(s) 39
BseJI GATNNNNATC 3 cut(s) 38, 537, 604
BseLI CCNNNNNNNGG 4 cut(s) 551, 831, 845, 998
BseMI GCAATG 2 cut(s) 267, 765
BseMII CTCAG 2 cut(s) 87, 816
BseNI ACTGG 4 cut(s) 18, 145, 268, 1042
BseXI GCAGC 5 cut(s) 76, 104, 301, 671, 890
BshFI GGCC 2 cut(s) 671, 838
BshNI GGYRCC 1 cut(s) 342
BsiSI CCGG 3 cut(s) 417, 668, 869
BslFI GGGAC 2 cut(s) 405, 503
BslI CCNNNNNNNGG 4 cut(s) 551, 831, 845, 998
BsmAI GTCTC 3 cut(s) 618, 931, 1007
BsmBI CGTCTC 1 cut(s) 618
BsmFI GGGAC 2 cut(s) 405, 503
BsnI GGCC 2 cut(s) 671, 838
Bso31I GGTCTC 2 cut(s) 931, 1007
Bsp1407I TGTACA 1 cut(s) 457
Bsp143I GATC 4 cut(s) 33, 225, 515, 664
Bsp19I CCATGG 1 cut(s) 783
BspACI CCGC 4 cut(s) 48, 150, 192, 680
BspANI GGCC 2 cut(s) 671, 838
BspCNI CTCAG 2 cut(s) 86, 815
BspHI TCATGA 2 cut(s) 627, 721
BspLI GGNNCC 3 cut(s) 256, 344, 421
BspMAI CTGCAG 1 cut(s) 94
BspOI GCTAGC 2 cut(s) 150, 576
BspPI GGATC 2 cut(s) 523, 659
BspT107I GGYRCC 1 cut(s) 342
BspTNI GGTCTC 2 cut(s) 931, 1007
BsrDI GCAATG 2 cut(s) 267, 765
BsrGI TGTACA 1 cut(s) 457
BsrI ACTGG 4 cut(s) 18, 145, 268, 1042
BssECI CCNNGG 3 cut(s) 162, 415, 783
BssMI GATC 4 cut(s) 33, 225, 515, 664
BssSI CACGAG 1 cut(s) 840
BssT1I CCWWGG 2 cut(s) 162, 783
Bst2BI CACGAG 1 cut(s) 840
Bst2UI CCWGG 1 cut(s) 942
Bst4CI ACNGT 6 cut(s) 137, 280, 397, 445, 546, 743
Bst6I CTCTTC 1 cut(s) 1010
BstAUI TGTACA 1 cut(s) 457
BstC8I GCNNGC 3 cut(s) 148, 319, 574
BstDEI CTNAG 2 cut(s) 73, 802
BstDSI CCRYGG 1 cut(s) 783
BstF5I GGATG 1 cut(s) 39
BstHHI GCGC 1 cut(s) 116
BstKTI GATC 4 cut(s) 36, 228, 518, 667
BstMAI GTCTC 3 cut(s) 618, 931, 1007
BstMBI GATC 4 cut(s) 33, 225, 515, 664
BstMWI GCNNNNNNNGC 4 cut(s) 578, 617, 659, 668
BstNI CCWGG 1 cut(s) 942
BstSCI CCNGG 2 cut(s) 415, 940
BstSFI CTRYAG 1 cut(s) 90
BstV1I GCAGC 5 cut(s) 76, 104, 301, 671, 890
BstV2I GAAGAC 1 cut(s) 333
BsuI GTATCC 1 cut(s) 953
BsuRI GGCC 2 cut(s) 671, 838
BtgI CCRYGG 1 cut(s) 783
BtrI CACGTC 1 cut(s) 808
BtsCI GGATG 1 cut(s) 39
BtsIMutI CAGTG 4 cut(s) 261, 276, 393, 1049
Cac8I GCNNGC 3 cut(s) 148, 319, 574
CciI TCATGA 2 cut(s) 627, 721
CfoI GCGC 1 cut(s) 116
Cfr13I GGNCC 1 cut(s) 419
CseI GACGC 1 cut(s) 600
CsiI ACCWGGT 1 cut(s) 940
Csp6I GTAC 4 cut(s) 138, 388, 458, 640
CspCI CAANNNNNGTGG 4 cut(s) 250, 285, 492, 527
CviAII CATG 4 cut(s) 583, 628, 722, 784
CviQI GTAC 4 cut(s) 138, 388, 458, 640
DdeI CTNAG 2 cut(s) 73, 802
DpnI GATC 4 cut(s) 35, 227, 517, 666
DpnII GATC 4 cut(s) 33, 225, 515, 664
EaeI YGGCCR 1 cut(s) 669
Eam1104I CTCTTC 1 cut(s) 1010
EarI CTCTTC 1 cut(s) 1010
Eco130I CCWWGG 2 cut(s) 162, 783
Eco31I GGTCTC 2 cut(s) 931, 1007
Eco47I GGWCC 1 cut(s) 419
Eco57I CTGAAG 1 cut(s) 36
EcoRII CCWGG 1 cut(s) 940
EcoT14I CCWWGG 2 cut(s) 162, 783
EcoT22I ATGCAT 1 cut(s) 655
ErhI CCWWGG 2 cut(s) 162, 783
Esp3I CGTCTC 1 cut(s) 618
FaeI CATG 4 cut(s) 586, 631, 725, 787
FaqI GGGAC 2 cut(s) 405, 503
FatI CATG 4 cut(s) 582, 627, 721, 783
FauNDI CATATG 1 cut(s) 655
Fnu4HI GCNGC 7 cut(s) 90, 93, 193, 315, 660, 680, 879
FokI GGATG 1 cut(s) 26
Fsp4HI GCNGC 7 cut(s) 90, 93, 193, 315, 660, 680, 879
FspBI CTAG 6 cut(s) 147, 242, 549, 573, 683, 1054
GlaI GCGC 1 cut(s) 115
GluI GCNGC 7 cut(s) 90, 93, 193, 315, 660, 680, 879
HaeIII GGCC 2 cut(s) 671, 838
HapII CCGG 3 cut(s) 417, 668, 869
HgaI GACGC 1 cut(s) 600
HhaI GCGC 1 cut(s) 116
Hin1II CATG 4 cut(s) 586, 631, 725, 787
Hin6I GCGC 1 cut(s) 114
HinP1I GCGC 1 cut(s) 114
HincII GTYRAC 2 cut(s) 64, 796
HindII GTYRAC 2 cut(s) 64, 796
HindIII AAGCTT 1 cut(s) 319
HinfI GANTC 2 cut(s) 767, 1002
HpaI GTTAAC 1 cut(s) 64
HpaII CCGG 3 cut(s) 417, 668, 869
HphI GGTGA 3 cut(s) 43, 511, 853
Hpy166II GTNNAC 4 cut(s) 64, 640, 766, 796
Hpy188I TCNGA 5 cut(s) 220, 298, 441, 805, 826
Hpy188III TCNNGA 5 cut(s) 172, 242, 628, 722, 842
Hpy8I GTNNAC 4 cut(s) 64, 640, 766, 796
HpyAV CCTTC 1 cut(s) 89
HpyCH4III ACNGT 6 cut(s) 137, 280, 397, 445, 546, 743
HpyCH4IV ACGT 1 cut(s) 807
HpyCH4V TGCA 8 cut(s) 92, 304, 317, 653, 659, 692, 758, 878
HpyF10VI GCNNNNNNNGC 4 cut(s) 578, 617, 659, 668
HpyF3I CTNAG 2 cut(s) 73, 802
HpySE526I ACGT 1 cut(s) 807
Hsp92II CATG 4 cut(s) 586, 631, 725, 787
HspAI GCGC 1 cut(s) 114
KspAI GTTAAC 1 cut(s) 64
Kzo9I GATC 4 cut(s) 33, 225, 515, 664
LmnI GCTCC 1 cut(s) 254
Lsp1109I GCAGC 5 cut(s) 76, 104, 301, 671, 890
LweI GCATC 2 cut(s) 745, 918
MabI ACCWGGT 1 cut(s) 940
MaeI CTAG 6 cut(s) 147, 242, 549, 573, 683, 1054
MaeII ACGT 1 cut(s) 807
MaeIII GTNAC 3 cut(s) 401, 499, 743
MalI GATC 4 cut(s) 35, 227, 517, 666
MboI GATC 4 cut(s) 33, 225, 515, 664
MboII GAAGA 4 cut(s) 28, 74, 338, 997
MluCI AATT 5 cut(s) 154, 292, 472, 850, 895
MlyI GAGTC 2 cut(s) 761, 996
MnlI CCTC 8 cut(s) 201, 268, 433, 517, 633, 849, 1002, 1044
Mph1103I ATGCAT 1 cut(s) 655
MseI TTAA 4 cut(s) 63, 332, 698, 954
MslI CAYNNNNRTG 3 cut(s) 348, 497, 818
MspA1I CMGCKG 1 cut(s) 662
MspI CCGG 3 cut(s) 417, 668, 869
MspR9I CCNGG 2 cut(s) 417, 942
MvaI CCWGG 1 cut(s) 942
MwoI GCNNNNNNNGC 4 cut(s) 578, 617, 659, 668
NciI CCSGG 1 cut(s) 417
NcoI CCATGG 1 cut(s) 783
NdeI CATATG 1 cut(s) 655
NdeII GATC 4 cut(s) 33, 225, 515, 664
NheI GCTAGC 2 cut(s) 146, 572
NlaIII CATG 4 cut(s) 586, 631, 725, 787
NlaIV GGNNCC 3 cut(s) 256, 344, 421
NmuCI GTSAC 1 cut(s) 499
NsiI ATGCAT 1 cut(s) 655
PagI TCATGA 2 cut(s) 627, 721
PkrI GCNGC 7 cut(s) 91, 94, 194, 316, 661, 681, 880
PleI GAGTC 2 cut(s) 761, 996
PpsI GAGTC 2 cut(s) 761, 996
Psp6I CCWGG 1 cut(s) 940
PspGI CCWGG 1 cut(s) 940
PspN4I GGNNCC 3 cut(s) 256, 344, 421
PspPI GGNCC 1 cut(s) 419
PstI CTGCAG 1 cut(s) 94
PvuII CAGCTG 1 cut(s) 662
RsaI GTAC 4 cut(s) 139, 389, 459, 641
RsaNI GTAC 4 cut(s) 138, 388, 458, 640
RseI CAYNNNNRTG 3 cut(s) 348, 497, 818
SaqAI TTAA 4 cut(s) 63, 332, 698, 954
SatI GCNGC 7 cut(s) 90, 93, 193, 315, 660, 680, 879
Sau3AI GATC 4 cut(s) 33, 225, 515, 664
Sau96I GGNCC 1 cut(s) 419
ScaI AGTACT 1 cut(s) 139
SchI GAGTC 2 cut(s) 761, 996
ScrFI CCNGG 2 cut(s) 417, 942
SexAI ACCWGGT 1 cut(s) 940
SfaNI GCATC 2 cut(s) 745, 918
SfcI CTRYAG 1 cut(s) 90
SinI GGWCC 1 cut(s) 419
SmiMI CAYNNNNRTG 3 cut(s) 348, 497, 818
SmlI CTYRAG 1 cut(s) 615
SmoI CTYRAG 1 cut(s) 615
Sse9I AATT 5 cut(s) 154, 292, 472, 850, 895
SsiI CCGC 4 cut(s) 48, 150, 192, 680
SspMI CTAG 6 cut(s) 147, 242, 549, 573, 683, 1054
StyD4I CCNGG 2 cut(s) 415, 940
StyI CCWWGG 2 cut(s) 162, 783
TaaI ACNGT 6 cut(s) 137, 280, 397, 445, 546, 743
TaiI ACGT 1 cut(s) 810
TaqI TCGA 2 cut(s) 171, 1008
TasI AATT 5 cut(s) 154, 292, 472, 850, 895
TatI WGTACW 3 cut(s) 137, 387, 457
TauI GCSGC 2 cut(s) 195, 682
Tru1I TTAA 4 cut(s) 63, 332, 698, 954
Tru9I TTAA 4 cut(s) 63, 332, 698, 954
TscAI CASTG 4 cut(s) 268, 283, 400, 1049
TseFI GTSAC 1 cut(s) 499
TseI GCWGC 5 cut(s) 89, 92, 314, 659, 878
Tsp45I GTSAC 1 cut(s) 499
TspDTI ATGAA 3 cut(s) 28, 464, 710
TspRI CASTG 4 cut(s) 268, 283, 400, 1049
VpaK11BI GGWCC 1 cut(s) 419
XapI RAATTY 2 cut(s) 292, 895
XbaI TCTAGA 1 cut(s) 241
XcmI CCANNNNNNNNNTGG 2 cut(s) 137, 712
XspI CTAG 6 cut(s) 147, 242, 549, 573, 683, 1054
ZrmI AGTACT 1 cut(s) 139
Zsp2I ATGCAT 1 cut(s) 655
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.