MD17G1102800.v1.1

Glycine-rich RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0004164
Physical Location & Seq
Reverse (-)
8732753 .. 8734557
1805 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1102800.v1.1.491

Sequence Viewer

Length: 456 bp
ATGCCATCAATGAGGAACAACACTTTGTGGACGCTCCTTGCTCGAAGAGCATCGACAACAATCACAATCCAAAATCCAACTTTAAGTCGGCGATTCTTCTGCGCACCACCGTCTTCGTCCTCCTCCTCCTCCTCTCCTCCCCCAAACAACCGGCTCTTCGTTGGAGGACTGTCATGGTCGGTGGACGAGAAGTCATTGAAAGACGCCTTCTCTTCATTCGGGGAGGTCACCGAAGTGAAGATAGTGTATGACAGAGATTCCGGTAGGTCAAGAGGGTTCGGATTTGTTAATTTCTCCAAGGAAGATGAAGCACAGGTTGCAAAAGATGCCATGGATGGAAAGGCATTGCTGGGTCGGCCATTGAGGGTTACTTCTGCTGTTGAAAAAGTAAGGGGAGGACCTGCTGTGGTTCCTCGCCTTCCCGACAGTGGGGATGCTTCCACTCGATATACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

152

Amino Acids

16.4

Weight (kDa)

9.9

Isoelectric Point (pI)

49.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 52 - 122 1.3e-22 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 103
Acc36I ACCTGC 1 cut(s) 409
AcoI YGGCCR 1 cut(s) 356
AcyI GRCGYC 1 cut(s) 204
AdeI CACNNNGTG 1 cut(s) 27
AfiI CCNNNNNNNGG 2 cut(s) 428, 429
AgsI TTSAA 2 cut(s) 199, 383
AhdI GACNNNNNGTC 1 cut(s) 190
AleI CACNNNNGTG 1 cut(s) 233
AoxI GGCC 1 cut(s) 356
AspLEI GCGC 1 cut(s) 104
AspS9I GGNCC 1 cut(s) 398
AsuHPI GGTGA 1 cut(s) 220
AvaII GGWCC 1 cut(s) 398
BbsI GAAGAC 1 cut(s) 105
BccI CCATC 2 cut(s) 13, 329
BcgI CGANNNNNNTGC 2 cut(s) 81, 115
BfuAI ACCTGC 1 cut(s) 409
Bme18I GGWCC 1 cut(s) 398
BmeRI GACNNNNNGTC 1 cut(s) 190
BmgT120I GGNCC 1 cut(s) 398
BmiI GGNNCC 1 cut(s) 411
BmsI GCATC 3 cut(s) 59, 316, 424
BpiI GAAGAC 1 cut(s) 105
BsaHI GRCGYC 1 cut(s) 204
BsaJI CCNNGG 2 cut(s) 297, 330
BsaWI WCCGGW 1 cut(s) 260
Bsc4I CCNNNNNNNGG 2 cut(s) 428, 429
Bse118I RCCGGY 1 cut(s) 150
Bse3DI GCAATG 1 cut(s) 344
BseDI CCNNGG 2 cut(s) 297, 330
BseGI GGATG 2 cut(s) 340, 439
BseLI CCNNNNNNNGG 2 cut(s) 428, 429
BseMI GCAATG 1 cut(s) 344
BseRI GAGGAG 5 cut(s) 112, 115, 118, 121, 126
BseYI CCCAGC 1 cut(s) 349
BshFI GGCC 1 cut(s) 358
BsiSI CCGG 2 cut(s) 151, 261
BslI CCNNNNNNNGG 2 cut(s) 428, 429
BsnI GGCC 1 cut(s) 358
Bsp19I CCATGG 1 cut(s) 330
BspANI GGCC 1 cut(s) 358
BspLI GGNNCC 1 cut(s) 411
BspMI ACCTGC 1 cut(s) 409
BspQI GCTCTTC 2 cut(s) 40, 161
BsrDI GCAATG 1 cut(s) 344
BsrFI RCCGGY 1 cut(s) 150
BssAI RCCGGY 1 cut(s) 150
BssECI CCNNGG 2 cut(s) 297, 330
BssNI GRCGYC 1 cut(s) 204
BssT1I CCWWGG 2 cut(s) 297, 330
Bst4CI ACNGT 3 cut(s) 111, 171, 428
Bst6I CTCTTC 3 cut(s) 40, 161, 217
BstACI GRCGYC 1 cut(s) 204
BstAPI GCANNNNNTGC 2 cut(s) 317, 326
BstDSI CCRYGG 1 cut(s) 330
BstEII GGTNACC 1 cut(s) 226
BstF5I GGATG 2 cut(s) 340, 439
BstHHI GCGC 1 cut(s) 104
BstMWI GCNNNNNNNGC 4 cut(s) 47, 317, 326, 355
BstPI GGTNACC 1 cut(s) 226
BstV2I GAAGAC 1 cut(s) 105
BsuRI GGCC 1 cut(s) 358
BtgI CCRYGG 1 cut(s) 330
BtsCI GGATG 2 cut(s) 340, 439
BtsIMutI CAGTG 1 cut(s) 433
BveI ACCTGC 1 cut(s) 409
CfoI GCGC 1 cut(s) 104
Cfr10I RCCGGY 1 cut(s) 150
Cfr13I GGNCC 1 cut(s) 398
CseI GACGC 2 cut(s) 40, 212
CviAII CATG 3 cut(s) 174, 331, 453
CviJI RGCY 2 cut(s) 154, 358
CviKI_1 RGCY 2 cut(s) 154, 358
DraIII CACNNNGTG 1 cut(s) 27
DriI GACNNNNNGTC 1 cut(s) 190
EaeI YGGCCR 1 cut(s) 356
Eam1104I CTCTTC 3 cut(s) 40, 161, 217
Eam1105I GACNNNNNGTC 1 cut(s) 190
EarI CTCTTC 3 cut(s) 40, 161, 217
Eco130I CCWWGG 2 cut(s) 297, 330
Eco47I GGWCC 1 cut(s) 398
Eco91I GGTNACC 1 cut(s) 226
EcoO109I RGGNCCY 1 cut(s) 398
EcoO65I GGTNACC 1 cut(s) 226
EcoT14I CCWWGG 2 cut(s) 297, 330
ErhI CCWWGG 2 cut(s) 297, 330
FaeI CATG 3 cut(s) 177, 334, 456
FaiI YATR 5 cut(s) 175, 249, 332, 450, 454
FatI CATG 3 cut(s) 173, 330, 452
FokI GGATG 2 cut(s) 347, 446
FspI TGCGCA 1 cut(s) 103
GlaI GCGC 1 cut(s) 103
GsaI CCCAGC 1 cut(s) 353
HaeIII GGCC 1 cut(s) 358
HapII CCGG 2 cut(s) 151, 261
HgaI GACGC 2 cut(s) 40, 212
HhaI GCGC 1 cut(s) 104
Hin1I GRCGYC 1 cut(s) 204
Hin1II CATG 3 cut(s) 177, 334, 456
Hin6I GCGC 1 cut(s) 102
HinP1I GCGC 1 cut(s) 102
HinfI GANTC 2 cut(s) 93, 257
HpaII CCGG 2 cut(s) 151, 261
HphI GGTGA 1 cut(s) 220
Hpy166II GTNNAC 2 cut(s) 30, 184
Hpy188I TCNGA 1 cut(s) 281
Hpy188III TCNNGA 2 cut(s) 270, 422
Hpy8I GTNNAC 2 cut(s) 30, 184
HpyAV CCTTC 2 cut(s) 217, 428
HpyCH4III ACNGT 3 cut(s) 111, 171, 428
HpyCH4V TGCA 1 cut(s) 320
HpyF10VI GCNNNNNNNGC 4 cut(s) 47, 317, 326, 355
Hsp92I GRCGYC 1 cut(s) 204
Hsp92II CATG 3 cut(s) 177, 334, 456
HspAI GCGC 1 cut(s) 102
LguI GCTCTTC 2 cut(s) 40, 161
LmnI GCTCC 1 cut(s) 39
LpnPI CCDG 5 cut(s) 164, 274, 299, 335, 414
LweI GCATC 3 cut(s) 59, 316, 424
MaeIII GTNAC 2 cut(s) 226, 367
MboII GAAGA 7 cut(s) 57, 88, 105, 148, 204, 250, 314
MluCI AATT 1 cut(s) 289
MmeI TCCRAC 2 cut(s) 101, 142
MseI TTAA 2 cut(s) 83, 288
MslI CAYNNNNRTG 1 cut(s) 233
MspI CCGG 2 cut(s) 151, 261
MwoI GCNNNNNNNGC 4 cut(s) 47, 317, 326, 355
NcoI CCATGG 1 cut(s) 330
NlaIII CATG 3 cut(s) 177, 334, 456
NlaIV GGNNCC 1 cut(s) 411
NmuCI GTSAC 1 cut(s) 226
NsbI TGCGCA 1 cut(s) 103
OliI CACNNNNGTG 1 cut(s) 233
PciSI GCTCTTC 2 cut(s) 40, 161
PfeI GAWTC 2 cut(s) 93, 257
PpuMI RGGWCCY 1 cut(s) 398
Psp5II RGGWCCY 1 cut(s) 398
PspEI GGTNACC 1 cut(s) 226
PspFI CCCAGC 1 cut(s) 349
PspN4I GGNNCC 1 cut(s) 411
PspPI GGNCC 1 cut(s) 398
PspPPI RGGWCCY 1 cut(s) 398
RseI CAYNNNNRTG 1 cut(s) 233
SapI GCTCTTC 2 cut(s) 40, 161
SaqAI TTAA 2 cut(s) 83, 288
Sau96I GGNCC 1 cut(s) 398
SetI ASST 4 cut(s) 228, 269, 318, 403
SfaNI GCATC 3 cut(s) 59, 316, 424
SinI GGWCC 1 cut(s) 398
SmiMI CAYNNNNRTG 1 cut(s) 233
Sse9I AATT 1 cut(s) 289
StyI CCWWGG 2 cut(s) 297, 330
TaaI ACNGT 3 cut(s) 111, 171, 428
TaqI TCGA 3 cut(s) 43, 53, 445
TasI AATT 1 cut(s) 289
TfiI GAWTC 2 cut(s) 93, 257
Tru1I TTAA 2 cut(s) 83, 288
Tru9I TTAA 2 cut(s) 83, 288
TscAI CASTG 1 cut(s) 433
TseFI GTSAC 1 cut(s) 226
Tsp45I GTSAC 1 cut(s) 226
TspDTI ATGAA 2 cut(s) 204, 321
TspRI CASTG 1 cut(s) 433
VpaK11BI GGWCC 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.