Rw2G044260

Glycine-rich RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0004164
Physical Location & Seq
Forward (+)
70925952 .. 70926698
747 bp
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UTR
Exon/CDS
Intron
Rw2G044260.1

Sequence Viewer

Length: 420 bp
ATGCTGAACAACTCTCTGTTAACGCTCCTTGCTAGAAGAGCATCAACAGGAGTAAATCAAAACCCAATTTTACTTCAGCGATGCTTCTGTTCACCACCGTCTTCTTCTTCAAACAATAAGCTCTTCGTCGGAGGCTTGTCATGGTCCTTGGACGAGAAGTCCCTGAAAGACGCTTTCTCTTCTTATGGGCAGGTCACTGAAGTGACTATAGTGTATGACAAGGACTCAGGCAGGTCTAGAGGCTTTGGATTTGTAAATTTCTCCAAGGAAGATGATGCCAAGTCTGCAAAAGATGCTATGGATGGAAAGGCGTTGATGGGTCGGCCACTGAGGATTAGTTTTGCTCTCGAAAGAGTTCGGGGAGGGACTGTAGTTGTTCCTTGCCTTCCAGGCATTGGAGATCGTGTTAATCGCTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

139

Amino Acids

15.06

Weight (kDa)

9.55

Isoelectric Point (pI)

40.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 41 - 111 2.3e-23 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 181, 222
AccB7I CCANNNNNTGG 1 cut(s) 395
AcoI YGGCCR 1 cut(s) 323
AcsI RAATTY 1 cut(s) 256
AcuI CTGAAG 2 cut(s) 59, 219
AfiI CCNNNNNNNGG 1 cut(s) 395
AgsI TTSAA 1 cut(s) 111
AhdI GACNNNNNGTC 1 cut(s) 157
AjnI CCWGG 1 cut(s) 388
AleI CACNNNNGTG 1 cut(s) 200
AluBI AGCT 1 cut(s) 121
AluI AGCT 1 cut(s) 121
AoxI GGCC 1 cut(s) 323
ApoI RAATTY 1 cut(s) 256
Asp700I GAANNNNTTC 1 cut(s) 354
AspS9I GGNCC 1 cut(s) 144
AsuHPI GGTGA 1 cut(s) 84
AvaII GGWCC 1 cut(s) 144
BbsI GAAGAC 1 cut(s) 93
BccI CCATC 2 cut(s) 296, 310
BciT130I CCWGG 1 cut(s) 390
BfaI CTAG 2 cut(s) 33, 237
BfmI CTRYAG 2 cut(s) 207, 369
BfuAI ACCTGC 2 cut(s) 181, 222
BglI GCCNNNNNGGC 1 cut(s) 390
Bme1390I CCNGG 1 cut(s) 390
Bme18I GGWCC 1 cut(s) 144
BmeRI GACNNNNNGTC 1 cut(s) 157
BmgT120I GGNCC 1 cut(s) 144
BmrFI CCNGG 1 cut(s) 390
BmsI GCATC 4 cut(s) 50, 71, 265, 283
BpiI GAAGAC 1 cut(s) 93
BsaJI CCNNGG 2 cut(s) 147, 264
BsaXI ACNNNNNCTCC 4 cut(s) 354, 384, 390, 420
Bsc4I CCNNNNNNNGG 1 cut(s) 395
BseBI CCWGG 1 cut(s) 390
BseDI CCNNGG 2 cut(s) 147, 264
BseGI GGATG 1 cut(s) 307
BseLI CCNNNNNNNGG 1 cut(s) 395
BseMII CTCAG 2 cut(s) 240, 320
BshFI GGCC 1 cut(s) 325
BslFI GGGAC 2 cut(s) 145, 379
BslI CCNNNNNNNGG 1 cut(s) 395
BsmFI GGGAC 2 cut(s) 145, 379
BsnI GGCC 1 cut(s) 325
Bsp143I GATC 1 cut(s) 400
BspANI GGCC 1 cut(s) 325
BspCNI CTCAG 2 cut(s) 239, 321
BspMI ACCTGC 2 cut(s) 181, 222
BspQI GCTCTTC 2 cut(s) 31, 128
BssECI CCNNGG 2 cut(s) 147, 264
BssMI GATC 1 cut(s) 400
BssT1I CCWWGG 2 cut(s) 147, 264
Bst2UI CCWGG 1 cut(s) 390
Bst4CI ACNGT 2 cut(s) 99, 370
Bst6I CTCTTC 3 cut(s) 31, 128, 184
BstAPI GCANNNNNTGC 1 cut(s) 293
BstDEI CTNAG 2 cut(s) 226, 329
BstF5I GGATG 1 cut(s) 307
BstKTI GATC 1 cut(s) 403
BstMBI GATC 1 cut(s) 400
BstMWI GCNNNNNNNGC 4 cut(s) 38, 284, 293, 390
BstNI CCWGG 1 cut(s) 390
BstSCI CCNGG 1 cut(s) 388
BstSFI CTRYAG 2 cut(s) 207, 369
BstV2I GAAGAC 1 cut(s) 93
BsuRI GGCC 1 cut(s) 325
BtgZI GCGATG 1 cut(s) 94
BtsCI GGATG 1 cut(s) 307
BtsIMutI CAGTG 2 cut(s) 195, 326
BveI ACCTGC 2 cut(s) 181, 222
Cfr13I GGNCC 1 cut(s) 144
CseI GACGC 1 cut(s) 179
CviAII CATG 1 cut(s) 141
CviJI RGCY 4 cut(s) 121, 135, 243, 325
CviKI_1 RGCY 4 cut(s) 121, 135, 243, 325
DdeI CTNAG 2 cut(s) 226, 329
DpnI GATC 1 cut(s) 402
DpnII GATC 1 cut(s) 400
DriI GACNNNNNGTC 1 cut(s) 157
EaeI YGGCCR 1 cut(s) 323
Eam1104I CTCTTC 3 cut(s) 31, 128, 184
Eam1105I GACNNNNNGTC 1 cut(s) 157
EarI CTCTTC 3 cut(s) 31, 128, 184
Eco130I CCWWGG 2 cut(s) 147, 264
Eco47I GGWCC 1 cut(s) 144
Eco57I CTGAAG 2 cut(s) 59, 219
EcoRII CCWGG 1 cut(s) 388
EcoT14I CCWWGG 2 cut(s) 147, 264
ErhI CCWWGG 2 cut(s) 147, 264
FaeI CATG 1 cut(s) 144
FaiI YATR 6 cut(s) 142, 186, 209, 216, 299, 418
FaqI GGGAC 2 cut(s) 145, 379
FatI CATG 1 cut(s) 140
FokI GGATG 1 cut(s) 314
FspBI CTAG 2 cut(s) 33, 237
HaeIII GGCC 1 cut(s) 325
HgaI GACGC 1 cut(s) 179
Hin1II CATG 1 cut(s) 144
HincII GTYRAC 1 cut(s) 21
HindII GTYRAC 1 cut(s) 21
HinfI GANTC 1 cut(s) 224
HpaI GTTAAC 1 cut(s) 21
HphI GGTGA 1 cut(s) 84
Hpy166II GTNNAC 2 cut(s) 21, 92
Hpy188I TCNGA 1 cut(s) 131
Hpy188III TCNNGA 2 cut(s) 237, 347
Hpy8I GTNNAC 2 cut(s) 21, 92
Hpy99I CGWCG 1 cut(s) 131
HpyAV CCTTC 1 cut(s) 395
HpyCH4III ACNGT 2 cut(s) 99, 370
HpyCH4V TGCA 1 cut(s) 287
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 284, 293, 390
HpyF3I CTNAG 2 cut(s) 226, 329
Hsp92II CATG 1 cut(s) 144
KspAI GTTAAC 1 cut(s) 21
Kzo9I GATC 1 cut(s) 400
LguI GCTCTTC 2 cut(s) 31, 128
LmnI GCTCC 1 cut(s) 30
LpnPI CCDG 7 cut(s) 33, 176, 176, 213, 217, 375, 402
LweI GCATC 4 cut(s) 50, 71, 265, 283
MaeI CTAG 2 cut(s) 33, 237
MaeIII GTNAC 2 cut(s) 193, 202
MalI GATC 1 cut(s) 402
MboI GATC 1 cut(s) 400
MboII GAAGA 7 cut(s) 48, 93, 96, 99, 115, 171, 281
MluCI AATT 2 cut(s) 66, 256
MlyI GAGTC 1 cut(s) 218
MmeI TCCRAC 1 cut(s) 109
MnlI CCTC 4 cut(s) 125, 233, 324, 356
MroXI GAANNNNTTC 1 cut(s) 354
MseI TTAA 2 cut(s) 20, 408
MslI CAYNNNNRTG 1 cut(s) 200
MspR9I CCNGG 1 cut(s) 390
MvaI CCWGG 1 cut(s) 390
MwoI GCNNNNNNNGC 4 cut(s) 38, 284, 293, 390
NdeII GATC 1 cut(s) 400
NlaIII CATG 1 cut(s) 144
NmuCI GTSAC 2 cut(s) 193, 202
OliI CACNNNNGTG 1 cut(s) 200
PciSI GCTCTTC 2 cut(s) 31, 128
PdmI GAANNNNTTC 1 cut(s) 354
PflMI CCANNNNNTGG 1 cut(s) 395
PleI GAGTC 1 cut(s) 218
PpsI GAGTC 1 cut(s) 218
Psp6I CCWGG 1 cut(s) 388
PspGI CCWGG 1 cut(s) 388
PspPI GGNCC 1 cut(s) 144
RseI CAYNNNNRTG 1 cut(s) 200
SapI GCTCTTC 2 cut(s) 31, 128
SaqAI TTAA 2 cut(s) 20, 408
Sau3AI GATC 1 cut(s) 400
Sau96I GGNCC 1 cut(s) 144
SchI GAGTC 1 cut(s) 218
ScrFI CCNGG 1 cut(s) 390
SetI ASST 3 cut(s) 123, 195, 236
SfaNI GCATC 4 cut(s) 50, 71, 265, 283
SfcI CTRYAG 2 cut(s) 207, 369
SinI GGWCC 1 cut(s) 144
SmiMI CAYNNNNRTG 1 cut(s) 200
Sse9I AATT 2 cut(s) 66, 256
SspMI CTAG 2 cut(s) 33, 237
StyD4I CCNGG 1 cut(s) 388
StyI CCWWGG 2 cut(s) 147, 264
TaaI ACNGT 2 cut(s) 99, 370
TaqI TCGA 1 cut(s) 348
TasI AATT 2 cut(s) 66, 256
Tru1I TTAA 2 cut(s) 20, 408
Tru9I TTAA 2 cut(s) 20, 408
TscAI CASTG 2 cut(s) 202, 333
TseFI GTSAC 2 cut(s) 193, 202
Tsp45I GTSAC 2 cut(s) 193, 202
TspRI CASTG 2 cut(s) 202, 333
Van91I CCANNNNNTGG 1 cut(s) 395
VpaK11BI GGWCC 1 cut(s) 144
XapI RAATTY 1 cut(s) 256
XbaI TCTAGA 1 cut(s) 236
XmnI GAANNNNTTC 1 cut(s) 354
XspI CTAG 2 cut(s) 33, 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.