Rh4BG221000

Glycine-rich RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0004164
Physical Location & Seq
Forward (+)
38180671 .. 38181238
568 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG221000.1

Sequence Viewer

Length: 312 bp
ATGCTGAACAACACTCTGTTAACGCTCCTTGCTAGAAGAGCATCAACAGGAGTGAATCAAAACCCAATTTTACTTCAGCGAAGACTGTCTTCTTCTTCAAACAATAAGCTCTTGGTCGGAGGCTTGTCATGGTCCTTGGACGAGAAGTCCCTGAAAGACGCTTTCTCTTCCTATGGGGAGGTCACTGAAGTGACTATAGTGTATGACAAGGACTCAGGCAGGTCTAGAGGCTTTGGATTTGTTAATTTCTCCAAGGACGATGATGCCAAGTCTGCAAAAGATGCTATGGATGGAAAGGTGAGTGGGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

103

Amino Acids

11.16

Weight (kDa)

9.05

Isoelectric Point (pI)

33.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 37 - 100 4.1e-20 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 210
AcuI CTGAAG 2 cut(s) 59, 207
AgsI TTSAA 1 cut(s) 99
AhdI GACNNNNNGTC 1 cut(s) 145
AleI CACNNNNGTG 1 cut(s) 188
AluBI AGCT 1 cut(s) 109
AluI AGCT 1 cut(s) 109
AspS9I GGNCC 1 cut(s) 132
AsuHPI GGTGA 1 cut(s) 310
AvaII GGWCC 1 cut(s) 132
BbsI GAAGAC 2 cut(s) 81, 88
BccI CCATC 1 cut(s) 284
BfaI CTAG 2 cut(s) 33, 225
BfmI CTRYAG 1 cut(s) 195
BfuAI ACCTGC 1 cut(s) 210
Bme18I GGWCC 1 cut(s) 132
BmeRI GACNNNNNGTC 1 cut(s) 145
BmgT120I GGNCC 1 cut(s) 132
BmsI GCATC 3 cut(s) 50, 253, 271
BpiI GAAGAC 2 cut(s) 81, 88
BsaJI CCNNGG 2 cut(s) 135, 252
BseDI CCNNGG 2 cut(s) 135, 252
BseGI GGATG 1 cut(s) 295
BseMII CTCAG 1 cut(s) 228
BslFI GGGAC 1 cut(s) 133
BsmFI GGGAC 1 cut(s) 133
BspCNI CTCAG 1 cut(s) 227
BspMI ACCTGC 1 cut(s) 210
BspQI GCTCTTC 1 cut(s) 31
BssECI CCNNGG 2 cut(s) 135, 252
BssT1I CCWWGG 2 cut(s) 135, 252
Bst4CI ACNGT 1 cut(s) 87
Bst6I CTCTTC 2 cut(s) 31, 172
BstAPI GCANNNNNTGC 1 cut(s) 281
BstDEI CTNAG 1 cut(s) 214
BstF5I GGATG 1 cut(s) 295
BstMWI GCNNNNNNNGC 3 cut(s) 38, 272, 281
BstSFI CTRYAG 1 cut(s) 195
BstV2I GAAGAC 2 cut(s) 81, 88
BtsCI GGATG 1 cut(s) 295
BtsIMutI CAGTG 1 cut(s) 183
BveI ACCTGC 1 cut(s) 210
Cfr13I GGNCC 1 cut(s) 132
CseI GACGC 1 cut(s) 167
CviAII CATG 1 cut(s) 129
CviJI RGCY 3 cut(s) 109, 123, 231
CviKI_1 RGCY 3 cut(s) 109, 123, 231
DdeI CTNAG 1 cut(s) 214
DriI GACNNNNNGTC 1 cut(s) 145
Eam1104I CTCTTC 2 cut(s) 31, 172
Eam1105I GACNNNNNGTC 1 cut(s) 145
EarI CTCTTC 2 cut(s) 31, 172
Eco130I CCWWGG 2 cut(s) 135, 252
Eco47I GGWCC 1 cut(s) 132
Eco57I CTGAAG 2 cut(s) 59, 207
EcoT14I CCWWGG 2 cut(s) 135, 252
ErhI CCWWGG 2 cut(s) 135, 252
FaeI CATG 1 cut(s) 132
FaiI YATR 5 cut(s) 130, 174, 197, 204, 287
FalI AAGNNNNNCTT 2 cut(s) 73, 105
FaqI GGGAC 1 cut(s) 133
FatI CATG 1 cut(s) 128
FokI GGATG 1 cut(s) 302
FspBI CTAG 2 cut(s) 33, 225
HgaI GACGC 1 cut(s) 167
Hin1II CATG 1 cut(s) 132
HincII GTYRAC 1 cut(s) 21
HindII GTYRAC 1 cut(s) 21
HinfI GANTC 2 cut(s) 55, 212
HpaI GTTAAC 1 cut(s) 21
HphI GGTGA 1 cut(s) 310
Hpy166II GTNNAC 1 cut(s) 21
Hpy188I TCNGA 1 cut(s) 119
Hpy188III TCNNGA 1 cut(s) 225
Hpy8I GTNNAC 1 cut(s) 21
HpyCH4III ACNGT 1 cut(s) 87
HpyCH4V TGCA 1 cut(s) 275
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 272, 281
HpyF3I CTNAG 1 cut(s) 214
Hsp92II CATG 1 cut(s) 132
KspAI GTTAAC 1 cut(s) 21
LguI GCTCTTC 1 cut(s) 31
LmnI GCTCC 1 cut(s) 30
LpnPI CCDG 4 cut(s) 33, 164, 201, 205
LweI GCATC 3 cut(s) 50, 253, 271
MaeI CTAG 2 cut(s) 33, 225
MaeIII GTNAC 2 cut(s) 181, 190
MboII GAAGA 6 cut(s) 48, 81, 84, 87, 93, 159
MluCI AATT 2 cut(s) 66, 244
MlyI GAGTC 1 cut(s) 206
MmeI TCCRAC 1 cut(s) 97
MnlI CCTC 3 cut(s) 113, 172, 221
MseI TTAA 2 cut(s) 20, 243
MslI CAYNNNNRTG 1 cut(s) 188
MwoI GCNNNNNNNGC 3 cut(s) 38, 272, 281
NlaIII CATG 1 cut(s) 132
NmuCI GTSAC 2 cut(s) 181, 190
OliI CACNNNNGTG 1 cut(s) 188
PciSI GCTCTTC 1 cut(s) 31
PfeI GAWTC 1 cut(s) 55
PleI GAGTC 1 cut(s) 206
PpsI GAGTC 1 cut(s) 206
PspPI GGNCC 1 cut(s) 132
RseI CAYNNNNRTG 1 cut(s) 188
SapI GCTCTTC 1 cut(s) 31
SaqAI TTAA 2 cut(s) 20, 243
Sau96I GGNCC 1 cut(s) 132
SchI GAGTC 1 cut(s) 206
SetI ASST 4 cut(s) 111, 183, 224, 300
SfaNI GCATC 3 cut(s) 50, 253, 271
SfcI CTRYAG 1 cut(s) 195
SinI GGWCC 1 cut(s) 132
SmiMI CAYNNNNRTG 1 cut(s) 188
Sse9I AATT 2 cut(s) 66, 244
SspMI CTAG 2 cut(s) 33, 225
StyI CCWWGG 2 cut(s) 135, 252
TaaI ACNGT 1 cut(s) 87
TasI AATT 2 cut(s) 66, 244
TfiI GAWTC 1 cut(s) 55
Tru1I TTAA 2 cut(s) 20, 243
Tru9I TTAA 2 cut(s) 20, 243
TscAI CASTG 1 cut(s) 190
TseFI GTSAC 2 cut(s) 181, 190
Tsp45I GTSAC 2 cut(s) 181, 190
TspRI CASTG 1 cut(s) 190
VpaK11BI GGWCC 1 cut(s) 132
XbaI TCTAGA 1 cut(s) 224
XspI CTAG 2 cut(s) 33, 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.