Rorug02G0468100

Glycine-rich RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004164
Physical Location & Seq
Forward (+)
59894190 .. 59896300
2111 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0468100.1

Sequence Viewer

Length: 210 bp
ATGGCTTCGAACGCAGCGGTGCCGTTTTGGCGATCGGCCGGTATGACCTACATCACCTACTCCAACATCTGCGCCAGTCTCGTTCGCAATTGCCTCAAGGAGCCTCACAAGACCGAGGCCATCTCCCGCGAGAAGGTCCATTTCTCCGTCTCCAAGTGGGCCGACGGCAAGCCCGAGAAGCCCACTATTCGTACGGATCAACCAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

69

Amino Acids

7.78

Weight (kDa)

9.1

Isoelectric Point (pI)

42.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_Eps PF04627 9 - 56 1.6e-23 Mitochondrial ATP synthase epsilon chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 19
AccII CGCG 1 cut(s) 129
AciI CCGC 2 cut(s) 17, 127
AclWI GGATC 1 cut(s) 204
AcoI YGGCCR 1 cut(s) 36
AfaI GTAC 1 cut(s) 193
AfiI CCNNNNNNNGG 1 cut(s) 133
Alw26I GTCTC 2 cut(s) 83, 154
AlwI GGATC 1 cut(s) 204
Ama87I CYCGRG 1 cut(s) 173
AoxI GGCC 3 cut(s) 36, 117, 159
ApeKI GCWGC 1 cut(s) 14
AspLEI GCGC 1 cut(s) 74
AspS9I GGNCC 2 cut(s) 136, 159
AsuHPI GGTGA 1 cut(s) 46
AsuII TTCGAA 1 cut(s) 8
AvaI CYCGRG 1 cut(s) 173
AvaII GGWCC 1 cut(s) 136
BanI GGYRCC 1 cut(s) 19
BbvI GCAGC 1 cut(s) 26
BccI CCATC 1 cut(s) 128
BceAI ACGGC 2 cut(s) 7, 181
BcoDI GTCTC 2 cut(s) 83, 154
BglI GCCNNNNNGGC 1 cut(s) 28
BisI GCNGC 1 cut(s) 15
BlsI GCNGC 1 cut(s) 16
Bme18I GGWCC 1 cut(s) 136
BmeT110I CYCGRG 1 cut(s) 173
BmgT120I GGNCC 2 cut(s) 136, 159
BmiI GGNNCC 2 cut(s) 21, 102
BplI GAGNNNNNCTC 2 cut(s) 107, 139
Bpu14I TTCGAA 1 cut(s) 8
BpuEI CTTGAG 1 cut(s) 80
BsaJI CCNNGG 1 cut(s) 114
Bsc4I CCNNNNNNNGG 1 cut(s) 133
Bse118I RCCGGY 1 cut(s) 38
Bse1I ACTGG 1 cut(s) 75
BseDI CCNNGG 1 cut(s) 114
BseLI CCNNNNNNNGG 1 cut(s) 133
BseNI ACTGG 1 cut(s) 75
BseX3I CGGCCG 1 cut(s) 36
BseXI GCAGC 1 cut(s) 26
Bsh1236I CGCG 1 cut(s) 129
Bsh1285I CGRYCG 2 cut(s) 35, 39
BshFI GGCC 3 cut(s) 38, 119, 161
BshNI GGYRCC 1 cut(s) 19
BsiEI CGRYCG 2 cut(s) 35, 39
BsiHKCI CYCGRG 1 cut(s) 173
BsiSI CCGG 1 cut(s) 39
BsiWI CGTACG 1 cut(s) 191
BslI CCNNNNNNNGG 1 cut(s) 133
BsmAI GTCTC 2 cut(s) 83, 154
BsmBI CGTCTC 1 cut(s) 154
BsnI GGCC 3 cut(s) 38, 119, 161
BsoBI CYCGRG 1 cut(s) 173
Bsp119I TTCGAA 1 cut(s) 8
Bsp143I GATC 2 cut(s) 32, 196
BspACI CCGC 2 cut(s) 17, 127
BspANI GGCC 3 cut(s) 38, 119, 161
BspFNI CGCG 1 cut(s) 129
BspLI GGNNCC 2 cut(s) 21, 102
BspPI GGATC 1 cut(s) 204
BspT104I TTCGAA 1 cut(s) 8
BspT107I GGYRCC 1 cut(s) 19
BsrFI RCCGGY 1 cut(s) 38
BsrI ACTGG 1 cut(s) 75
BssAI RCCGGY 1 cut(s) 38
BssECI CCNNGG 1 cut(s) 114
BssMI GATC 2 cut(s) 32, 196
BstBI TTCGAA 1 cut(s) 8
BstC8I GCNNGC 1 cut(s) 170
BstFNI CGCG 1 cut(s) 129
BstHHI GCGC 1 cut(s) 74
BstKTI GATC 2 cut(s) 35, 199
BstMAI GTCTC 2 cut(s) 83, 154
BstMBI GATC 2 cut(s) 32, 196
BstMCI CGRYCG 2 cut(s) 35, 39
BstMWI GCNNNNNNNGC 3 cut(s) 11, 28, 178
BstUI CGCG 1 cut(s) 129
BstV1I GCAGC 1 cut(s) 26
BstZI CGGCCG 1 cut(s) 36
BsuRI GGCC 3 cut(s) 38, 119, 161
Cac8I GCNNGC 1 cut(s) 170
CfoI GCGC 1 cut(s) 74
Cfr10I RCCGGY 1 cut(s) 38
Cfr13I GGNCC 2 cut(s) 136, 159
Csp6I GTAC 1 cut(s) 192
CviJI RGCY 7 cut(s) 5, 38, 103, 119, 161, 172, 181
CviKI_1 RGCY 7 cut(s) 5, 38, 103, 119, 161, 172, 181
CviQI GTAC 1 cut(s) 192
DpnI GATC 2 cut(s) 34, 198
DpnII GATC 2 cut(s) 32, 196
EaeI YGGCCR 1 cut(s) 36
EagI CGGCCG 1 cut(s) 36
EclXI CGGCCG 1 cut(s) 36
Eco47I GGWCC 1 cut(s) 136
Eco52I CGGCCG 1 cut(s) 36
Eco88I CYCGRG 1 cut(s) 173
Esp3I CGTCTC 1 cut(s) 154
FaiI YATR 1 cut(s) 44
FauI CCCGC 1 cut(s) 134
Fnu4HI GCNGC 1 cut(s) 15
Fsp4HI GCNGC 1 cut(s) 15
GlaI GCGC 1 cut(s) 73
GluI GCNGC 1 cut(s) 15
HaeIII GGCC 3 cut(s) 38, 119, 161
HapII CCGG 1 cut(s) 39
HhaI GCGC 1 cut(s) 74
Hin6I GCGC 1 cut(s) 72
HinP1I GCGC 1 cut(s) 72
HpaII CCGG 1 cut(s) 39
HphI GGTGA 1 cut(s) 46
Hpy99I CGWCG 1 cut(s) 167
HpyAV CCTTC 1 cut(s) 127
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 28, 178
HspAI GCGC 1 cut(s) 72
Kzo9I GATC 2 cut(s) 32, 196
LmnI GCTCC 1 cut(s) 100
LpnPI CCDG 2 cut(s) 52, 88
Lsp1109I GCAGC 1 cut(s) 26
MalI GATC 2 cut(s) 34, 198
MboI GATC 2 cut(s) 32, 196
MfeI CAATTG 1 cut(s) 88
MluCI AATT 1 cut(s) 88
MmeI TCCRAC 1 cut(s) 87
MnlI CCTC 3 cut(s) 104, 109, 114
MspA1I CMGCKG 1 cut(s) 17
MspI CCGG 1 cut(s) 39
MunI CAATTG 1 cut(s) 88
MvnI CGCG 1 cut(s) 129
MwoI GCNNNNNNNGC 3 cut(s) 11, 28, 178
NdeII GATC 2 cut(s) 32, 196
NlaIV GGNNCC 2 cut(s) 21, 102
NspV TTCGAA 1 cut(s) 8
PcsI WCGNNNNNNNCGW 1 cut(s) 171
Pfl23II CGTACG 1 cut(s) 191
PkrI GCNGC 1 cut(s) 16
Ple19I CGATCG 1 cut(s) 35
PspLI CGTACG 1 cut(s) 191
PspN4I GGNNCC 2 cut(s) 21, 102
PspPI GGNCC 2 cut(s) 136, 159
PvuI CGATCG 1 cut(s) 35
RsaI GTAC 1 cut(s) 193
RsaNI GTAC 1 cut(s) 192
SatI GCNGC 1 cut(s) 15
Sau3AI GATC 2 cut(s) 32, 196
Sau96I GGNCC 2 cut(s) 136, 159
SetI ASST 3 cut(s) 50, 59, 138
SfuI TTCGAA 1 cut(s) 8
SinI GGWCC 1 cut(s) 136
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
Sse9I AATT 1 cut(s) 88
SsiI CCGC 2 cut(s) 17, 127
TaqI TCGA 1 cut(s) 8
TaqII GACCGA 1 cut(s) 128
TasI AATT 1 cut(s) 88
TseI GCWGC 1 cut(s) 14
TspGWI ACGGA 2 cut(s) 136, 209
VpaK11BI GGWCC 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.