AT3G08000

glycine-rich RNA-binding protein 4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0004164
Physical Location & Seq
Reverse (-)
2554829 .. 2555929
1101 bp
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UTR
Exon/CDS
Intron
AT3G08000.1

Sequence Viewer

Length: 432 bp
ATGATGAAAAATGGTATTGAGCTATTAGTGAGACGAGTTTCAGCGATACCTCAACACTCTATTTCTTCTAGCTTCCATTTTCTTCCTCAATTTTGCACTTCTTCTTCTGCATCGCCCAGTTCCAAGCTATTCATCGGAGGATTGTCCTGGTCTGTGGATGAGCAATCTCTCAAAGACGCTTTCTCTTCCTTTGGAGAGGTTGCAGAAGTTAGGATTGCGTATGACAAAGGAAGTGGGAGATCAAGAGGATTTGGTTTTGTTGATTTTGCAGAAGAAGGTGATGCTCTATCTGCAAAAGACGCCATGGATGGAAAGGGATTATTGGGTCGACCGTTGAGGATAAGTTTTGCCCTTGAAAGAGTGCGTGGTGGTCCTGTGGTTGTTCCACGTCTTGGGAAATCGAAGAGAGAAAGAGAAAGAGTCTTCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

143

Amino Acids

15.61

Weight (kDa)

9.83

Isoelectric Point (pI)

44.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 43 - 113 5.3e-21 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 392
AccI GTMKAC 1 cut(s) 328
AcyI GRCGYC 1 cut(s) 300
AfiI CCNNNNNNNGG 1 cut(s) 392
AgsI TTSAA 2 cut(s) 356, 427
AjiI CACGTC 1 cut(s) 389
AjnI CCWGG 1 cut(s) 146
AluBI AGCT 3 cut(s) 22, 72, 127
AluI AGCT 3 cut(s) 22, 72, 127
Alw26I GTCTC 1 cut(s) 25
AspS9I GGNCC 1 cut(s) 371
AsuHPI GGTGA 1 cut(s) 290
AvaII GGWCC 1 cut(s) 371
BbsI GAAGAC 1 cut(s) 415
BccI CCATC 1 cut(s) 302
BciT130I CCWGG 1 cut(s) 148
BcoDI GTCTC 1 cut(s) 25
BfaI CTAG 1 cut(s) 69
Bme1390I CCNGG 1 cut(s) 148
Bme18I GGWCC 1 cut(s) 371
BmgBI CACGTC 1 cut(s) 389
BmgT120I GGNCC 1 cut(s) 371
BmrFI CCNGG 1 cut(s) 148
BmrI ACTGGG 1 cut(s) 111
BmsI GCATC 2 cut(s) 119, 271
BmuI ACTGGG 1 cut(s) 111
BpiI GAAGAC 1 cut(s) 415
BsaHI GRCGYC 1 cut(s) 300
BsaJI CCNNGG 1 cut(s) 303
Bsc4I CCNNNNNNNGG 1 cut(s) 392
Bse1I ACTGG 1 cut(s) 117
BseBI CCWGG 1 cut(s) 148
BseDI CCNNGG 1 cut(s) 303
BseGI GGATG 2 cut(s) 163, 313
BseLI CCNNNNNNNGG 1 cut(s) 392
BseNI ACTGG 1 cut(s) 117
Bsh1285I CGRYCG 1 cut(s) 332
BsiEI CGRYCG 1 cut(s) 332
BslI CCNNNNNNNGG 1 cut(s) 392
BsmAI GTCTC 1 cut(s) 25
BsmBI CGTCTC 1 cut(s) 25
Bsp143I GATC 1 cut(s) 239
Bsp19I CCATGG 1 cut(s) 303
BsrI ACTGG 1 cut(s) 117
BssECI CCNNGG 1 cut(s) 303
BssMI GATC 1 cut(s) 239
BssNI GRCGYC 1 cut(s) 300
BssT1I CCWWGG 1 cut(s) 303
Bst2UI CCWGG 1 cut(s) 148
Bst4CI ACNGT 1 cut(s) 333
Bst6I CTCTTC 2 cut(s) 190, 398
BstACI GRCGYC 1 cut(s) 300
BstDSI CCRYGG 1 cut(s) 303
BstF5I GGATG 2 cut(s) 163, 313
BstKTI GATC 1 cut(s) 242
BstMAI GTCTC 1 cut(s) 25
BstMBI GATC 1 cut(s) 239
BstMCI CGRYCG 1 cut(s) 332
BstMWI GCNNNNNNNGC 2 cut(s) 290, 299
BstNI CCWGG 1 cut(s) 148
BstSCI CCNGG 1 cut(s) 146
BstV2I GAAGAC 1 cut(s) 415
BtgI CCRYGG 1 cut(s) 303
BtgZI GCGATG 1 cut(s) 96
BtrI CACGTC 1 cut(s) 389
BtsCI GGATG 2 cut(s) 163, 313
Cfr13I GGNCC 1 cut(s) 371
CseI GACGC 2 cut(s) 185, 308
CspCI CAANNNNNGTGG 2 cut(s) 214, 249
CviAII CATG 1 cut(s) 304
CviJI RGCY 3 cut(s) 22, 72, 127
CviKI_1 RGCY 3 cut(s) 22, 72, 127
DpnI GATC 1 cut(s) 241
DpnII GATC 1 cut(s) 239
Eam1104I CTCTTC 2 cut(s) 190, 398
EarI CTCTTC 2 cut(s) 190, 398
Eco130I CCWWGG 1 cut(s) 303
Eco47I GGWCC 1 cut(s) 371
EcoRII CCWGG 1 cut(s) 146
EcoT14I CCWWGG 1 cut(s) 303
ErhI CCWWGG 1 cut(s) 303
Esp3I CGTCTC 1 cut(s) 25
FaeI CATG 1 cut(s) 307
FaiI YATR 2 cut(s) 222, 305
FatI CATG 1 cut(s) 303
FblI GTMKAC 1 cut(s) 328
FokI GGATG 2 cut(s) 170, 320
FspBI CTAG 1 cut(s) 69
HgaI GACGC 2 cut(s) 185, 308
Hin1I GRCGYC 1 cut(s) 300
Hin1II CATG 1 cut(s) 307
HincII GTYRAC 1 cut(s) 329
HindII GTYRAC 1 cut(s) 329
HinfI GANTC 1 cut(s) 420
HphI GGTGA 1 cut(s) 290
Hpy166II GTNNAC 1 cut(s) 329
Hpy188I TCNGA 1 cut(s) 137
Hpy188III TCNNGA 1 cut(s) 243
Hpy8I GTNNAC 1 cut(s) 329
HpyAV CCTTC 1 cut(s) 269
HpyCH4III ACNGT 1 cut(s) 333
HpyCH4IV ACGT 1 cut(s) 388
HpyCH4V TGCA 5 cut(s) 96, 110, 203, 269, 293
HpyF10VI GCNNNNNNNGC 2 cut(s) 290, 299
HpySE526I ACGT 1 cut(s) 388
Hsp92I GRCGYC 1 cut(s) 300
Hsp92II CATG 1 cut(s) 307
Kzo9I GATC 1 cut(s) 239
LpnPI CCDG 4 cut(s) 130, 133, 160, 387
LweI GCATC 2 cut(s) 119, 271
MaeI CTAG 1 cut(s) 69
MaeII ACGT 1 cut(s) 388
MalI GATC 1 cut(s) 241
MboI GATC 1 cut(s) 239
MboII GAAGA 8 cut(s) 57, 74, 93, 96, 177, 284, 415, 415
MluCI AATT 1 cut(s) 89
MlyI GAGTC 1 cut(s) 429
MnlI CCTC 6 cut(s) 60, 96, 131, 190, 239, 330
MspR9I CCNGG 1 cut(s) 148
MvaI CCWGG 1 cut(s) 148
MwoI GCNNNNNNNGC 2 cut(s) 290, 299
NcoI CCATGG 1 cut(s) 303
NdeII GATC 1 cut(s) 239
NlaIII CATG 1 cut(s) 307
PflMI CCANNNNNTGG 1 cut(s) 392
PleI GAGTC 1 cut(s) 428
PpsI GAGTC 1 cut(s) 428
Psp6I CCWGG 1 cut(s) 146
PspGI CCWGG 1 cut(s) 146
PspPI GGNCC 1 cut(s) 371
SalI GTCGAC 1 cut(s) 327
Sau3AI GATC 1 cut(s) 239
Sau96I GGNCC 1 cut(s) 371
SchI GAGTC 1 cut(s) 429
ScrFI CCNGG 1 cut(s) 148
SetI ASST 7 cut(s) 24, 52, 74, 129, 201, 280, 391
SfaNI GCATC 2 cut(s) 119, 271
SinI GGWCC 1 cut(s) 371
Sse9I AATT 1 cut(s) 89
SspMI CTAG 1 cut(s) 69
StyD4I CCNGG 1 cut(s) 146
StyI CCWWGG 1 cut(s) 303
TaaI ACNGT 1 cut(s) 333
TaiI ACGT 1 cut(s) 391
TaqI TCGA 2 cut(s) 328, 401
TasI AATT 1 cut(s) 89
TspDTI ATGAA 2 cut(s) 20, 121
Van91I CCANNNNNTGG 1 cut(s) 392
VpaK11BI GGWCC 1 cut(s) 371
XmiI GTMKAC 1 cut(s) 328
XspI CTAG 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.