Rorug02G0467500

Glycine-rich RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004164
Physical Location & Seq
Reverse (-)
59859508 .. 59862489
2982 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0467500.1

Sequence Viewer

Length: 948 bp
ATGCTTCTCCAAACCCAGTCCCTCACTCCCCATTTGGCTCTTCTCCCACTCCCTCCTTCAAAACCCATTTCCAAAACCCAATTCTTCAACCCGAACCCACTTCGCAGAACCCACTCCCCACCTCCAAGATGCTCGCTTTCCGCCGTTTCGGAGCCGACCCAGTTGCAAAAACCGAGCACCAAGCCGTTTCCGGCCGAGGTTTCACGGACCATTGTGGAGTTGGTCTCTGTGGGTACGCTTTCCACTTTGACCCAACAAGGTTGGCCTTTGGGAATTGGGGTTCGCTTTGCTGTTGACCCTGAAGGGACTCCAGTCTTGTGCTTGAACGACTCCAATAGACAATTCTCTATTGATAGGAGGTCTAGTCTCCATGTTCAGTTAGAGCAATCCGGGTTGAGGACGCCTCAATGCACCATATTAGGCAGCATTGACAAACCAGAAGACAGGACCTTTTTGAAGTACCTTCATTCAGTGTGGAGAAAAAGGTTTGAAGAAGAAGTTGATGAAGATCTTCTATATGTTGTTGATGTGGACCGAGTACTTCAGATGGAGGACTTTAGAGAGGTTGGTACATGGATCACATCTTCAGATTATAAAAAAGCTCAACCTGATCCTCTCCGAGACTTTTCAGAAAAGCTAGTGAATGATATAAACACCAACAATATTGAAGATATTAACCGCTTTTGCAACATTTATGCTGATTTGGACTTTCAGGTATCTGAAGCAAAGTTGATATGGATTGATCGGCTAGGGCTTGACATGCGTCTTTGGTCTCCTCAGAATGGTATTTTTGAGGTTCGCATTCCCTTCCCCAGAGATGTGACGGATGAAAAAGGAGCAAAGTCAATGTTTAATTGTATGGCGCAATTAGCATGGGAGGTCGAAAAGAATTTCCATGCCCCAGATTTTGAGAAGGTGAAACAAGTAAAGCAGATAACCAATGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

315

Amino Acids

36.09

Weight (kDa)

5.66

Isoelectric Point (pI)

45.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2470 PF10615 211 - 283 5.2e-09 Domain of unknown function (DUF2470)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 594
AciI CCGC 2 cut(s) 141, 679
AclWI GGATC 2 cut(s) 584, 605
AcoI YGGCCR 1 cut(s) 192
AcsI RAATTY 1 cut(s) 889
AcuI CTGAAG 4 cut(s) 321, 527, 570, 741
AcyI GRCGYC 1 cut(s) 401
AfaI GTAC 4 cut(s) 235, 461, 540, 571
AfiI CCNNNNNNNGG 2 cut(s) 396, 782
AgsI TTSAA 6 cut(s) 60, 88, 325, 457, 491, 668
AjuI GAANNNNNNNTTGG 4 cut(s) 65, 97, 326, 358
AloI GAACNNNNNNTCC 2 cut(s) 264, 296
AluBI AGCT 2 cut(s) 602, 637
AluI AGCT 2 cut(s) 602, 637
Alw21I GWGCWC 1 cut(s) 179
Alw26I GTCTC 4 cut(s) 229, 371, 615, 777
AlwI GGATC 2 cut(s) 584, 605
AoxI GGCC 2 cut(s) 192, 263
ApeKI GCWGC 1 cut(s) 423
ApoI RAATTY 1 cut(s) 889
Asp700I GAANNNNTTC 1 cut(s) 510
AspLEI GCGC 1 cut(s) 865
AspS9I GGNCC 3 cut(s) 207, 447, 532
AsuC2I CCSGG 1 cut(s) 391
AsuHPI GGTGA 1 cut(s) 928
AvaII GGWCC 3 cut(s) 207, 447, 532
BbsI GAAGAC 1 cut(s) 447
Bbv12I GWGCWC 1 cut(s) 179
BbvI GCAGC 1 cut(s) 435
BccI CCATC 1 cut(s) 541
BceAI ACGGC 2 cut(s) 128, 169
BcgI CGANNNNNNTGC 2 cut(s) 145, 179
BcnI CCSGG 1 cut(s) 391
BcoDI GTCTC 4 cut(s) 229, 371, 615, 777
BfaI CTAG 3 cut(s) 363, 638, 749
BglII AGATCT 1 cut(s) 508
BisI GCNGC 1 cut(s) 424
BlsI GCNGC 1 cut(s) 425
BmcAI AGTACT 1 cut(s) 540
Bme1390I CCNGG 1 cut(s) 391
Bme18I GGWCC 3 cut(s) 207, 447, 532
BmgT120I GGNCC 3 cut(s) 207, 447, 532
BmiI GGNNCC 1 cut(s) 153
BmrFI CCNGG 1 cut(s) 391
BmrI ACTGGG 2 cut(s) 10, 154
BmsI GCATC 1 cut(s) 119
BmuI ACTGGG 2 cut(s) 10, 154
BoxI GACNNNNGTC 2 cut(s) 311, 762
BpiI GAAGAC 1 cut(s) 447
BplI GAGNNNNNCTC 4 cut(s) 209, 241, 388, 420
BpmI CTGGAG 1 cut(s) 294
BpuMI CCSGG 1 cut(s) 391
BsaBI GATNNNNATC 1 cut(s) 507
BsaHI GRCGYC 1 cut(s) 401
BsaI GGTCTC 2 cut(s) 229, 777
BsaJI CCNNGG 1 cut(s) 195
BsaXI ACNNNNNCTCC 2 cut(s) 349, 379
Bsc4I CCNNNNNNNGG 2 cut(s) 396, 782
Bse1I ACTGG 3 cut(s) 16, 160, 311
Bse8I GATNNNNATC 1 cut(s) 507
BseDI CCNNGG 1 cut(s) 195
BseGI GGATG 1 cut(s) 832
BseJI GATNNNNATC 1 cut(s) 507
BseLI CCNNNNNNNGG 2 cut(s) 396, 782
BseMII CTCAG 1 cut(s) 791
BseNI ACTGG 3 cut(s) 16, 160, 311
BseRI GAGGAG 1 cut(s) 765
BseX3I CGGCCG 1 cut(s) 192
BseXI GCAGC 1 cut(s) 435
Bsh1285I CGRYCG 1 cut(s) 195
BshFI GGCC 2 cut(s) 194, 265
BsiEI CGRYCG 1 cut(s) 195
BsiHKAI GWGCWC 1 cut(s) 179
BsiSI CCGG 2 cut(s) 191, 390
BslFI GGGAC 2 cut(s) 4, 319
BslI CCNNNNNNNGG 2 cut(s) 396, 782
BsmAI GTCTC 4 cut(s) 229, 371, 615, 777
BsmFI GGGAC 2 cut(s) 4, 319
BsmI GAATGC 1 cut(s) 801
BsnI GGCC 2 cut(s) 194, 265
Bso31I GGTCTC 2 cut(s) 229, 777
Bsp1286I GDGCHC 1 cut(s) 179
Bsp143I GATC 4 cut(s) 508, 576, 610, 742
BspACI CCGC 2 cut(s) 141, 679
BspANI GGCC 2 cut(s) 194, 265
BspCNI CTCAG 1 cut(s) 790
BspLI GGNNCC 1 cut(s) 153
BspPI GGATC 2 cut(s) 584, 605
BspQI GCTCTTC 1 cut(s) 45
BspTNI GGTCTC 2 cut(s) 229, 777
BsrI ACTGG 3 cut(s) 16, 160, 311
BssECI CCNNGG 1 cut(s) 195
BssMI GATC 4 cut(s) 508, 576, 610, 742
BssNI GRCGYC 1 cut(s) 401
Bst6I CTCTTC 1 cut(s) 45
BstACI GRCGYC 1 cut(s) 401
BstC8I GCNNGC 1 cut(s) 134
BstDEI CTNAG 1 cut(s) 777
BstF5I GGATG 1 cut(s) 832
BstHHI GCGC 1 cut(s) 865
BstKTI GATC 4 cut(s) 511, 579, 613, 745
BstMAI GTCTC 4 cut(s) 229, 371, 615, 777
BstMBI GATC 4 cut(s) 508, 576, 610, 742
BstMCI CGRYCG 1 cut(s) 195
BstMWI GCNNNNNNNGC 2 cut(s) 760, 869
BstNSI RCATGY 1 cut(s) 763
BstPAI GACNNNNGTC 2 cut(s) 311, 762
BstSCI CCNGG 1 cut(s) 389
BstV1I GCAGC 1 cut(s) 435
BstV2I GAAGAC 1 cut(s) 447
BstX2I RGATCY 1 cut(s) 508
BstYI RGATCY 1 cut(s) 508
BstZI CGGCCG 1 cut(s) 192
BsuRI GGCC 2 cut(s) 194, 265
BtsCI GGATG 1 cut(s) 832
BtsIMutI CAGTG 1 cut(s) 477
Cac8I GCNNGC 1 cut(s) 134
CfoI GCGC 1 cut(s) 865
Cfr13I GGNCC 3 cut(s) 207, 447, 532
CseI GACGC 2 cut(s) 409, 752
Csp6I GTAC 4 cut(s) 234, 460, 539, 570
CviAII CATG 5 cut(s) 371, 573, 760, 873, 896
CviJI RGCY 9 cut(s) 38, 154, 184, 194, 265, 602, 637, 748, 754
CviKI_1 RGCY 9 cut(s) 38, 154, 184, 194, 265, 602, 637, 748, 754
CviQI GTAC 4 cut(s) 234, 460, 539, 570
DdeI CTNAG 1 cut(s) 777
DpnI GATC 4 cut(s) 510, 578, 612, 744
DpnII GATC 4 cut(s) 508, 576, 610, 742
EaeI YGGCCR 1 cut(s) 192
EagI CGGCCG 1 cut(s) 192
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
EciI GGCGGA 1 cut(s) 130
EclXI CGGCCG 1 cut(s) 192
Eco31I GGTCTC 2 cut(s) 229, 777
Eco47I GGWCC 3 cut(s) 207, 447, 532
Eco52I CGGCCG 1 cut(s) 192
Eco57I CTGAAG 4 cut(s) 321, 527, 570, 741
EcoO109I RGGNCCY 1 cut(s) 447
FaeI CATG 5 cut(s) 374, 576, 763, 876, 899
FaqI GGGAC 2 cut(s) 4, 319
FatI CATG 5 cut(s) 370, 572, 759, 872, 895
Fnu4HI GCNGC 1 cut(s) 424
FokI GGATG 1 cut(s) 839
Fsp4HI GCNGC 1 cut(s) 424
FspBI CTAG 3 cut(s) 363, 638, 749
GlaI GCGC 1 cut(s) 864
GluI GCNGC 1 cut(s) 424
GsuI CTGGAG 1 cut(s) 294
HaeIII GGCC 2 cut(s) 194, 265
HapII CCGG 2 cut(s) 191, 390
HgaI GACGC 2 cut(s) 409, 752
HhaI GCGC 1 cut(s) 865
Hin1I GRCGYC 1 cut(s) 401
Hin1II CATG 5 cut(s) 374, 576, 763, 876, 899
Hin6I GCGC 1 cut(s) 863
HinP1I GCGC 1 cut(s) 863
HincII GTYRAC 1 cut(s) 295
HindII GTYRAC 1 cut(s) 295
HinfI GANTC 2 cut(s) 307, 329
HpaII CCGG 2 cut(s) 191, 390
HphI GGTGA 1 cut(s) 928
Hpy166II GTNNAC 2 cut(s) 295, 532
Hpy188I TCNGA 7 cut(s) 151, 546, 589, 620, 631, 721, 780
Hpy8I GTNNAC 2 cut(s) 295, 532
HpyAV CCTTC 5 cut(s) 66, 296, 473, 817, 907
HpyCH4V TGCA 3 cut(s) 166, 411, 687
HpyF10VI GCNNNNNNNGC 2 cut(s) 760, 869
HpyF3I CTNAG 1 cut(s) 777
Hsp92I GRCGYC 1 cut(s) 401
Hsp92II CATG 5 cut(s) 374, 576, 763, 876, 899
HspAI GCGC 1 cut(s) 863
Kzo9I GATC 4 cut(s) 508, 576, 610, 742
LguI GCTCTTC 1 cut(s) 45
LmnI GCTCC 2 cut(s) 151, 836
Lsp1109I GCAGC 1 cut(s) 435
LweI GCATC 1 cut(s) 119
MaeI CTAG 3 cut(s) 363, 638, 749
MaeIII GTNAC 1 cut(s) 820
MalI GATC 4 cut(s) 510, 578, 612, 744
MboI GATC 4 cut(s) 508, 576, 610, 742
MboII GAAGA 9 cut(s) 32, 76, 452, 503, 503, 506, 518, 576, 680
MflI RGATCY 1 cut(s) 508
MhlI GDGCHC 1 cut(s) 179
MluCI AATT 6 cut(s) 80, 273, 341, 853, 866, 889
MlyI GAGTC 2 cut(s) 301, 323
MroXI GAANNNNTTC 1 cut(s) 510
MseI TTAA 2 cut(s) 675, 852
MspI CCGG 2 cut(s) 191, 390
MspR9I CCNGG 1 cut(s) 391
Mva1269I GAATGC 1 cut(s) 801
MwoI GCNNNNNNNGC 2 cut(s) 760, 869
NciI CCSGG 1 cut(s) 391
NdeII GATC 4 cut(s) 508, 576, 610, 742
NlaIII CATG 5 cut(s) 374, 576, 763, 876, 899
NlaIV GGNNCC 1 cut(s) 153
NmeAIII GCCGAG 1 cut(s) 220
NmuCI GTSAC 1 cut(s) 820
NspI RCATGY 1 cut(s) 763
PciSI GCTCTTC 1 cut(s) 45
PctI GAATGC 1 cut(s) 801
PdmI GAANNNNTTC 1 cut(s) 510
PkrI GCNGC 1 cut(s) 425
PleI GAGTC 2 cut(s) 301, 323
PpsI GAGTC 2 cut(s) 301, 323
PpuMI RGGWCCY 1 cut(s) 447
PshAI GACNNNNGTC 2 cut(s) 311, 762
PsiI TTATAA 1 cut(s) 594
Psp5II RGGWCCY 1 cut(s) 447
PspN4I GGNNCC 1 cut(s) 153
PspPI GGNCC 3 cut(s) 207, 447, 532
PspPPI RGGWCCY 1 cut(s) 447
PsuI RGATCY 1 cut(s) 508
RsaI GTAC 4 cut(s) 235, 461, 540, 571
RsaNI GTAC 4 cut(s) 234, 460, 539, 570
SapI GCTCTTC 1 cut(s) 45
SaqAI TTAA 2 cut(s) 675, 852
SatI GCNGC 1 cut(s) 424
Sau3AI GATC 4 cut(s) 508, 576, 610, 742
Sau96I GGNCC 3 cut(s) 207, 447, 532
ScaI AGTACT 1 cut(s) 540
SchI GAGTC 2 cut(s) 301, 323
ScrFI CCNGG 1 cut(s) 391
SduI GDGCHC 1 cut(s) 179
SfaNI GCATC 1 cut(s) 119
SinI GGWCC 3 cut(s) 207, 447, 532
Sse9I AATT 6 cut(s) 80, 273, 341, 853, 866, 889
SsiI CCGC 2 cut(s) 141, 679
SspI AATATT 1 cut(s) 664
SspMI CTAG 3 cut(s) 363, 638, 749
StyD4I CCNGG 1 cut(s) 389
TaqI TCGA 1 cut(s) 882
TaqII GACCGA 1 cut(s) 549
TasI AATT 6 cut(s) 80, 273, 341, 853, 866, 889
TatI WGTACW 1 cut(s) 538
Tru1I TTAA 2 cut(s) 675, 852
Tru9I TTAA 2 cut(s) 675, 852
TscAI CASTG 1 cut(s) 477
TseFI GTSAC 1 cut(s) 820
TseI GCWGC 1 cut(s) 423
Tsp45I GTSAC 1 cut(s) 820
TspDTI ATGAA 3 cut(s) 455, 519, 843
TspGWI ACGGA 2 cut(s) 220, 839
TspRI CASTG 1 cut(s) 477
VpaK11BI GGWCC 3 cut(s) 207, 447, 532
XapI RAATTY 1 cut(s) 889
XceI RCATGY 1 cut(s) 763
XcmI CCANNNNNNNNNTGG 1 cut(s) 217
XmnI GAANNNNTTC 1 cut(s) 510
XspI CTAG 3 cut(s) 363, 638, 749
ZrmI AGTACT 1 cut(s) 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.