Rh4DG218500

Glycine-rich RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0004164
Physical Location & Seq
Forward (+)
41895922 .. 41896668
747 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG218500.1

Sequence Viewer

Length: 408 bp
ATGCTGAACAACACTCTGTTAACGCTCCTTGCTAGAAGAGCATCAACAGGAGTGAATCAAAACCCAATTTTACTTCAGCGAAGACTGTCTTCTTCTTCAAACAATAAGCTCTTGGTCGGAGGCTTGTCATGGTCCTTGGACGAGAAGTCCCTGAAAGACGCTTTCTCTTCCTATGGGGAGGTCACTGAAGTGACTATAGTGTATGACAAGGACTCAGGCAGGTCTAGAGGCTTTGGATTTGTTAATTTCTCCAAGGACGATGATGCCAAGTCTGCAAAAGATGCTATGGATGGAAAGGCGTTGATGGGTCGGCCACTGAGGATTAGTTTTGCTCTCGAAAGACTTCGGGGAGGGACTGTAGTTGTTCCTCGCCTTCCAGCCATTGGAGATGGTGTTAATCGCTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

135

Amino Acids

14.65

Weight (kDa)

9.98

Isoelectric Point (pI)

40.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 37 - 107 7.9e-22 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 210
AccB7I CCANNNNNTGG 1 cut(s) 383
AcoI YGGCCR 1 cut(s) 311
AcuI CTGAAG 2 cut(s) 59, 207
AfiI CCNNNNNNNGG 1 cut(s) 383
AgsI TTSAA 1 cut(s) 99
AhdI GACNNNNNGTC 1 cut(s) 145
AleI CACNNNNGTG 1 cut(s) 188
AluBI AGCT 1 cut(s) 109
AluI AGCT 1 cut(s) 109
AoxI GGCC 1 cut(s) 311
Asp700I GAANNNNTTC 1 cut(s) 342
AspS9I GGNCC 1 cut(s) 132
AvaII GGWCC 1 cut(s) 132
BbsI GAAGAC 2 cut(s) 81, 88
BccI CCATC 3 cut(s) 284, 298, 383
BfaI CTAG 2 cut(s) 33, 225
BfmI CTRYAG 2 cut(s) 195, 357
BfuAI ACCTGC 1 cut(s) 210
Bme18I GGWCC 1 cut(s) 132
BmeRI GACNNNNNGTC 1 cut(s) 145
BmgT120I GGNCC 1 cut(s) 132
BmsI GCATC 3 cut(s) 50, 253, 271
BpiI GAAGAC 2 cut(s) 81, 88
BsaJI CCNNGG 2 cut(s) 135, 252
BsaXI ACNNNNNCTCC 4 cut(s) 342, 372, 378, 408
Bsc4I CCNNNNNNNGG 1 cut(s) 383
BseDI CCNNGG 2 cut(s) 135, 252
BseGI GGATG 1 cut(s) 295
BseLI CCNNNNNNNGG 1 cut(s) 383
BseMII CTCAG 2 cut(s) 228, 308
BshFI GGCC 1 cut(s) 313
BslFI GGGAC 2 cut(s) 133, 367
BslI CCNNNNNNNGG 1 cut(s) 383
BsmFI GGGAC 2 cut(s) 133, 367
BsnI GGCC 1 cut(s) 313
BspANI GGCC 1 cut(s) 313
BspCNI CTCAG 2 cut(s) 227, 309
BspMI ACCTGC 1 cut(s) 210
BspQI GCTCTTC 1 cut(s) 31
BssECI CCNNGG 2 cut(s) 135, 252
BssT1I CCWWGG 2 cut(s) 135, 252
Bst4CI ACNGT 2 cut(s) 87, 358
Bst6I CTCTTC 2 cut(s) 31, 172
BstAPI GCANNNNNTGC 1 cut(s) 281
BstDEI CTNAG 2 cut(s) 214, 317
BstF5I GGATG 1 cut(s) 295
BstMWI GCNNNNNNNGC 3 cut(s) 38, 272, 281
BstSFI CTRYAG 2 cut(s) 195, 357
BstV2I GAAGAC 2 cut(s) 81, 88
BsuRI GGCC 1 cut(s) 313
BtsCI GGATG 1 cut(s) 295
BtsIMutI CAGTG 2 cut(s) 183, 314
BveI ACCTGC 1 cut(s) 210
Cfr13I GGNCC 1 cut(s) 132
CseI GACGC 1 cut(s) 167
CviAII CATG 1 cut(s) 129
CviJI RGCY 5 cut(s) 109, 123, 231, 313, 380
CviKI_1 RGCY 5 cut(s) 109, 123, 231, 313, 380
DdeI CTNAG 2 cut(s) 214, 317
DriI GACNNNNNGTC 1 cut(s) 145
EaeI YGGCCR 1 cut(s) 311
Eam1104I CTCTTC 2 cut(s) 31, 172
Eam1105I GACNNNNNGTC 1 cut(s) 145
EarI CTCTTC 2 cut(s) 31, 172
Eco130I CCWWGG 2 cut(s) 135, 252
Eco47I GGWCC 1 cut(s) 132
Eco57I CTGAAG 2 cut(s) 59, 207
EcoT14I CCWWGG 2 cut(s) 135, 252
ErhI CCWWGG 2 cut(s) 135, 252
FaeI CATG 1 cut(s) 132
FaiI YATR 6 cut(s) 130, 174, 197, 204, 287, 406
FalI AAGNNNNNCTT 2 cut(s) 73, 105
FaqI GGGAC 2 cut(s) 133, 367
FatI CATG 1 cut(s) 128
FokI GGATG 1 cut(s) 302
FspBI CTAG 2 cut(s) 33, 225
HaeIII GGCC 1 cut(s) 313
HgaI GACGC 1 cut(s) 167
Hin1II CATG 1 cut(s) 132
HincII GTYRAC 1 cut(s) 21
HindII GTYRAC 1 cut(s) 21
HinfI GANTC 2 cut(s) 55, 212
HpaI GTTAAC 1 cut(s) 21
Hpy166II GTNNAC 1 cut(s) 21
Hpy188I TCNGA 1 cut(s) 119
Hpy188III TCNNGA 2 cut(s) 225, 335
Hpy8I GTNNAC 1 cut(s) 21
HpyAV CCTTC 1 cut(s) 383
HpyCH4III ACNGT 2 cut(s) 87, 358
HpyCH4V TGCA 1 cut(s) 275
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 272, 281
HpyF3I CTNAG 2 cut(s) 214, 317
Hsp92II CATG 1 cut(s) 132
KspAI GTTAAC 1 cut(s) 21
LguI GCTCTTC 1 cut(s) 31
LmnI GCTCC 1 cut(s) 30
LpnPI CCDG 5 cut(s) 33, 164, 201, 205, 390
LweI GCATC 3 cut(s) 50, 253, 271
MaeI CTAG 2 cut(s) 33, 225
MaeIII GTNAC 2 cut(s) 181, 190
MboII GAAGA 6 cut(s) 48, 81, 84, 87, 93, 159
MluCI AATT 2 cut(s) 66, 244
MlyI GAGTC 1 cut(s) 206
MmeI TCCRAC 1 cut(s) 97
MnlI CCTC 6 cut(s) 113, 172, 221, 312, 344, 378
MroXI GAANNNNTTC 1 cut(s) 342
MseI TTAA 3 cut(s) 20, 243, 396
MslI CAYNNNNRTG 1 cut(s) 188
MwoI GCNNNNNNNGC 3 cut(s) 38, 272, 281
NlaIII CATG 1 cut(s) 132
NmuCI GTSAC 2 cut(s) 181, 190
OliI CACNNNNGTG 1 cut(s) 188
PciSI GCTCTTC 1 cut(s) 31
PdmI GAANNNNTTC 1 cut(s) 342
PfeI GAWTC 1 cut(s) 55
PflMI CCANNNNNTGG 1 cut(s) 383
PleI GAGTC 1 cut(s) 206
PpsI GAGTC 1 cut(s) 206
PspPI GGNCC 1 cut(s) 132
RseI CAYNNNNRTG 1 cut(s) 188
SapI GCTCTTC 1 cut(s) 31
SaqAI TTAA 3 cut(s) 20, 243, 396
Sau96I GGNCC 1 cut(s) 132
SchI GAGTC 1 cut(s) 206
SetI ASST 3 cut(s) 111, 183, 224
SfaNI GCATC 3 cut(s) 50, 253, 271
SfcI CTRYAG 2 cut(s) 195, 357
SinI GGWCC 1 cut(s) 132
SmiMI CAYNNNNRTG 1 cut(s) 188
Sse9I AATT 2 cut(s) 66, 244
SspMI CTAG 2 cut(s) 33, 225
StyI CCWWGG 2 cut(s) 135, 252
TaaI ACNGT 2 cut(s) 87, 358
TaqI TCGA 1 cut(s) 336
TasI AATT 2 cut(s) 66, 244
TfiI GAWTC 1 cut(s) 55
Tru1I TTAA 3 cut(s) 20, 243, 396
Tru9I TTAA 3 cut(s) 20, 243, 396
TscAI CASTG 2 cut(s) 190, 321
TseFI GTSAC 2 cut(s) 181, 190
Tsp45I GTSAC 2 cut(s) 181, 190
TspRI CASTG 2 cut(s) 190, 321
Van91I CCANNNNNTGG 1 cut(s) 383
VpaK11BI GGWCC 1 cut(s) 132
XbaI TCTAGA 1 cut(s) 224
XmnI GAANNNNTTC 1 cut(s) 342
XspI CTAG 2 cut(s) 33, 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.