Rw2G044230

Glycine-rich RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0004164
Physical Location & Seq
Forward (+)
70916188 .. 70916970
783 bp
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UTR
Exon/CDS
Intron
Rw2G044230.1

Sequence Viewer

Length: 441 bp
ATGCTGAACAACAGTTTGTTAACGTTCCTTGCTAGAAGAGCATCAACAGCAGCAAATCAAAACCCCCCAATTTTACTTCATCGATGCTTCTGTTCACCACCGTCTTCTTCTTCTTCTTCCTCTCCTCCCCCAAACAATAAGCTCTTCGTCGGAGGCTTGTCGTGGTCGTTGGACGAGAAGTCCCTGAAAGACGCTTTCTCTTCCTATGGAGAGGTCACTGAAGTGACTATAGTGTATGACAAGGACTCAGGCAGGTCTAGAGGCTTTGGATTTGTTAATTTCTCCAAGGAAGATGATGCCAAGTCTGCAAAAGATGCTATGGATGGAAAGGCATTGATGGGTCGGCCACTGAGGATTAGTTTTGCTCTTGAAAGAGTTCGGGGAGGGACTGTAGTTGTTCCTCGCCTTCCAGCCATTGGACATGGTGTTAATCGCTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

146

Amino Acids

15.73

Weight (kDa)

9.69

Isoelectric Point (pI)

49.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 48 - 118 3.1e-23 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 243
AccB7I CCANNNNNTGG 1 cut(s) 416
AclI AACGTT 1 cut(s) 23
AcoI YGGCCR 1 cut(s) 344
AcuI CTGAAG 1 cut(s) 240
AfiI CCNNNNNNNGG 1 cut(s) 416
AgsI TTSAA 1 cut(s) 371
AhdI GACNNNNNGTC 1 cut(s) 178
AleI CACNNNNGTG 1 cut(s) 221
AluBI AGCT 1 cut(s) 142
AluI AGCT 1 cut(s) 142
AoxI GGCC 1 cut(s) 344
ApeKI GCWGC 1 cut(s) 50
Asp700I GAANNNNTTC 1 cut(s) 375
AsuHPI GGTGA 1 cut(s) 87
BbsI GAAGAC 1 cut(s) 96
BbvI GCAGC 1 cut(s) 62
BccI CCATC 2 cut(s) 317, 331
BfaI CTAG 2 cut(s) 33, 258
BfmI CTRYAG 2 cut(s) 228, 390
BfuAI ACCTGC 1 cut(s) 243
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
BmeRI GACNNNNNGTC 1 cut(s) 178
BmsI GCATC 4 cut(s) 50, 74, 286, 304
BpiI GAAGAC 1 cut(s) 96
Bsa29I ATCGAT 1 cut(s) 82
BsaJI CCNNGG 1 cut(s) 285
BsaXI ACNNNNNCTCC 2 cut(s) 375, 405
Bsc4I CCNNNNNNNGG 1 cut(s) 416
BseCI ATCGAT 1 cut(s) 82
BseDI CCNNGG 1 cut(s) 285
BseGI GGATG 1 cut(s) 328
BseLI CCNNNNNNNGG 1 cut(s) 416
BseMII CTCAG 2 cut(s) 261, 341
BseRI GAGGAG 1 cut(s) 114
BseXI GCAGC 1 cut(s) 62
BshFI GGCC 1 cut(s) 346
BshVI ATCGAT 1 cut(s) 82
BslFI GGGAC 2 cut(s) 166, 400
BslI CCNNNNNNNGG 1 cut(s) 416
BsmFI GGGAC 2 cut(s) 166, 400
BsnI GGCC 1 cut(s) 346
BspANI GGCC 1 cut(s) 346
BspCNI CTCAG 2 cut(s) 260, 342
BspDI ATCGAT 1 cut(s) 82
BspMI ACCTGC 1 cut(s) 243
BspQI GCTCTTC 2 cut(s) 31, 149
BssECI CCNNGG 1 cut(s) 285
BssT1I CCWWGG 1 cut(s) 285
Bst4CI ACNGT 3 cut(s) 14, 102, 391
Bst6I CTCTTC 3 cut(s) 31, 149, 205
BstAPI GCANNNNNTGC 1 cut(s) 314
BstDEI CTNAG 2 cut(s) 247, 350
BstF5I GGATG 1 cut(s) 328
BstMWI GCNNNNNNNGC 4 cut(s) 38, 47, 305, 314
BstSFI CTRYAG 2 cut(s) 228, 390
BstV1I GCAGC 1 cut(s) 62
BstV2I GAAGAC 1 cut(s) 96
Bsu15I ATCGAT 1 cut(s) 82
BsuRI GGCC 1 cut(s) 346
BsuTUI ATCGAT 1 cut(s) 82
BtsCI GGATG 1 cut(s) 328
BtsIMutI CAGTG 2 cut(s) 216, 347
BveI ACCTGC 1 cut(s) 243
ClaI ATCGAT 1 cut(s) 82
CseI GACGC 1 cut(s) 200
CviAII CATG 1 cut(s) 422
CviJI RGCY 5 cut(s) 142, 156, 264, 346, 413
CviKI_1 RGCY 5 cut(s) 142, 156, 264, 346, 413
DdeI CTNAG 2 cut(s) 247, 350
DriI GACNNNNNGTC 1 cut(s) 178
EaeI YGGCCR 1 cut(s) 344
Eam1104I CTCTTC 3 cut(s) 31, 149, 205
Eam1105I GACNNNNNGTC 1 cut(s) 178
EarI CTCTTC 3 cut(s) 31, 149, 205
Eco130I CCWWGG 1 cut(s) 285
Eco57I CTGAAG 1 cut(s) 240
EcoT14I CCWWGG 1 cut(s) 285
ErhI CCWWGG 1 cut(s) 285
FaeI CATG 1 cut(s) 425
FaiI YATR 6 cut(s) 207, 230, 237, 320, 423, 439
FaqI GGGAC 2 cut(s) 166, 400
FatI CATG 1 cut(s) 421
Fnu4HI GCNGC 1 cut(s) 51
FokI GGATG 1 cut(s) 335
Fsp4HI GCNGC 1 cut(s) 51
FspBI CTAG 2 cut(s) 33, 258
GluI GCNGC 1 cut(s) 51
HaeIII GGCC 1 cut(s) 346
HgaI GACGC 1 cut(s) 200
Hin1II CATG 1 cut(s) 425
HincII GTYRAC 1 cut(s) 21
HindII GTYRAC 1 cut(s) 21
HinfI GANTC 1 cut(s) 245
HpaI GTTAAC 1 cut(s) 21
HphI GGTGA 1 cut(s) 87
Hpy166II GTNNAC 2 cut(s) 21, 95
Hpy188I TCNGA 1 cut(s) 152
Hpy188III TCNNGA 2 cut(s) 258, 368
Hpy8I GTNNAC 2 cut(s) 21, 95
Hpy99I CGWCG 1 cut(s) 152
HpyAV CCTTC 1 cut(s) 416
HpyCH4III ACNGT 3 cut(s) 14, 102, 391
HpyCH4IV ACGT 1 cut(s) 23
HpyCH4V TGCA 1 cut(s) 308
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 47, 305, 314
HpyF3I CTNAG 2 cut(s) 247, 350
HpySE526I ACGT 1 cut(s) 23
Hsp92II CATG 1 cut(s) 425
KspAI GTTAAC 1 cut(s) 21
LguI GCTCTTC 2 cut(s) 31, 149
LpnPI CCDG 4 cut(s) 197, 234, 238, 423
Lsp1109I GCAGC 1 cut(s) 62
LweI GCATC 4 cut(s) 50, 74, 286, 304
MaeI CTAG 2 cut(s) 33, 258
MaeII ACGT 1 cut(s) 23
MaeIII GTNAC 2 cut(s) 214, 223
MboII GAAGA 9 cut(s) 48, 96, 99, 102, 105, 108, 136, 192, 302
MluCI AATT 2 cut(s) 69, 277
MlyI GAGTC 1 cut(s) 239
MmeI TCCRAC 2 cut(s) 130, 150
MnlI CCTC 8 cut(s) 130, 135, 146, 205, 254, 345, 377, 411
MroXI GAANNNNTTC 1 cut(s) 375
MseI TTAA 3 cut(s) 20, 276, 429
MslI CAYNNNNRTG 1 cut(s) 221
MwoI GCNNNNNNNGC 4 cut(s) 38, 47, 305, 314
NlaIII CATG 1 cut(s) 425
NmuCI GTSAC 2 cut(s) 214, 223
OliI CACNNNNGTG 1 cut(s) 221
PciSI GCTCTTC 2 cut(s) 31, 149
PdmI GAANNNNTTC 1 cut(s) 375
PflMI CCANNNNNTGG 1 cut(s) 416
PkrI GCNGC 1 cut(s) 52
PleI GAGTC 1 cut(s) 239
PpsI GAGTC 1 cut(s) 239
Psp1406I AACGTT 1 cut(s) 23
RseI CAYNNNNRTG 1 cut(s) 221
SapI GCTCTTC 2 cut(s) 31, 149
SaqAI TTAA 3 cut(s) 20, 276, 429
SatI GCNGC 1 cut(s) 51
SchI GAGTC 1 cut(s) 239
SetI ASST 4 cut(s) 26, 144, 216, 257
SfaNI GCATC 4 cut(s) 50, 74, 286, 304
SfcI CTRYAG 2 cut(s) 228, 390
SmiMI CAYNNNNRTG 1 cut(s) 221
Sse9I AATT 2 cut(s) 69, 277
SspMI CTAG 2 cut(s) 33, 258
StyI CCWWGG 1 cut(s) 285
TaaI ACNGT 3 cut(s) 14, 102, 391
TaiI ACGT 1 cut(s) 26
TaqI TCGA 1 cut(s) 82
TasI AATT 2 cut(s) 69, 277
Tru1I TTAA 3 cut(s) 20, 276, 429
Tru9I TTAA 3 cut(s) 20, 276, 429
TscAI CASTG 2 cut(s) 223, 354
TseFI GTSAC 2 cut(s) 214, 223
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 2 cut(s) 214, 223
TspDTI ATGAA 1 cut(s) 68
TspRI CASTG 2 cut(s) 223, 354
Van91I CCANNNNNTGG 1 cut(s) 416
XbaI TCTAGA 1 cut(s) 257
XmnI GAANNNNTTC 1 cut(s) 375
XspI CTAG 2 cut(s) 33, 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.