RchiOBHm_Chr2g0158391

Glycine-rich RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0004164
Physical Location & Seq
Forward (+)
74693348 .. 74694528
1181 bp
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UTR
Exon/CDS
Intron
PRQ52707

Sequence Viewer

Length: 423 bp
ATGCTGAACTACTCTCTGTTAACGCTCCTTGCTAGAAGAGCATCAACAGGAGTAAATCAAAACCCAATTTTACTTCAGCGATGCTTCTGTTCACCACCGTCTTCTTCTTCTTCAAACAATAAGCTCTTCGTCGGAGGCTTGTCATGGTCCTTGGACGAGAAGTCCCTGAAAGACGCTTTCTCTTCTTATGGGCAGGTCACTGAAGTGACTATAGTGTATGACAAGGACTCAGGCAGGTCTAGGGGCTTTGGATTTGTAAATTTCTCCAAGGAAGATGATGCCAAGTCTGCAAAAGATGCTATGGATGGAAAGGCGTTGATGGGTCGGCCACTGAGGATTAGTTTTGCTCTCGAAAGAGTTCGGGGAGGGACTGTAGTTGTTCCTCGCCTTCCAGGCATTGGAGATCGTGTTAATCGCTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

140

Amino Acids

15.25

Weight (kDa)

9.79

Isoelectric Point (pI)

40.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 42 - 112 2.4e-23 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 184, 225
AccB7I CCANNNNNTGG 1 cut(s) 398
AcoI YGGCCR 1 cut(s) 326
AcsI RAATTY 1 cut(s) 259
AcuI CTGAAG 2 cut(s) 59, 222
AfiI CCNNNNNNNGG 1 cut(s) 398
AgsI TTSAA 1 cut(s) 114
AhdI GACNNNNNGTC 1 cut(s) 160
AjnI CCWGG 1 cut(s) 391
AleI CACNNNNGTG 1 cut(s) 203
AluBI AGCT 1 cut(s) 124
AluI AGCT 1 cut(s) 124
AoxI GGCC 1 cut(s) 326
ApoI RAATTY 1 cut(s) 259
Asp700I GAANNNNTTC 1 cut(s) 357
AspS9I GGNCC 1 cut(s) 147
AsuHPI GGTGA 1 cut(s) 84
AvaII GGWCC 1 cut(s) 147
BbsI GAAGAC 1 cut(s) 93
BccI CCATC 2 cut(s) 299, 313
BciT130I CCWGG 1 cut(s) 393
BfaI CTAG 2 cut(s) 33, 240
BfmI CTRYAG 2 cut(s) 210, 372
BfuAI ACCTGC 2 cut(s) 184, 225
BglI GCCNNNNNGGC 1 cut(s) 393
Bme1390I CCNGG 1 cut(s) 393
Bme18I GGWCC 1 cut(s) 147
BmeRI GACNNNNNGTC 1 cut(s) 160
BmgT120I GGNCC 1 cut(s) 147
BmrFI CCNGG 1 cut(s) 393
BmsI GCATC 4 cut(s) 50, 71, 268, 286
BpiI GAAGAC 1 cut(s) 93
BsaJI CCNNGG 2 cut(s) 150, 267
BsaXI ACNNNNNCTCC 4 cut(s) 357, 387, 393, 423
Bsc4I CCNNNNNNNGG 1 cut(s) 398
BseBI CCWGG 1 cut(s) 393
BseDI CCNNGG 2 cut(s) 150, 267
BseGI GGATG 1 cut(s) 310
BseLI CCNNNNNNNGG 1 cut(s) 398
BseMII CTCAG 2 cut(s) 243, 323
BshFI GGCC 1 cut(s) 328
BslFI GGGAC 2 cut(s) 148, 382
BslI CCNNNNNNNGG 1 cut(s) 398
BsmFI GGGAC 2 cut(s) 148, 382
BsnI GGCC 1 cut(s) 328
Bsp143I GATC 1 cut(s) 403
BspANI GGCC 1 cut(s) 328
BspCNI CTCAG 2 cut(s) 242, 324
BspMI ACCTGC 2 cut(s) 184, 225
BspQI GCTCTTC 2 cut(s) 31, 131
BssECI CCNNGG 2 cut(s) 150, 267
BssMI GATC 1 cut(s) 403
BssT1I CCWWGG 2 cut(s) 150, 267
Bst2UI CCWGG 1 cut(s) 393
Bst4CI ACNGT 2 cut(s) 99, 373
Bst6I CTCTTC 3 cut(s) 31, 131, 187
BstAPI GCANNNNNTGC 1 cut(s) 296
BstDEI CTNAG 2 cut(s) 229, 332
BstF5I GGATG 1 cut(s) 310
BstKTI GATC 1 cut(s) 406
BstMBI GATC 1 cut(s) 403
BstMWI GCNNNNNNNGC 4 cut(s) 38, 287, 296, 393
BstNI CCWGG 1 cut(s) 393
BstSCI CCNGG 1 cut(s) 391
BstSFI CTRYAG 2 cut(s) 210, 372
BstV2I GAAGAC 1 cut(s) 93
BsuRI GGCC 1 cut(s) 328
BtgZI GCGATG 1 cut(s) 94
BtsCI GGATG 1 cut(s) 310
BtsIMutI CAGTG 2 cut(s) 198, 329
BveI ACCTGC 2 cut(s) 184, 225
Cfr13I GGNCC 1 cut(s) 147
CseI GACGC 1 cut(s) 182
CviAII CATG 1 cut(s) 144
CviJI RGCY 4 cut(s) 124, 138, 246, 328
CviKI_1 RGCY 4 cut(s) 124, 138, 246, 328
DdeI CTNAG 2 cut(s) 229, 332
DpnI GATC 1 cut(s) 405
DpnII GATC 1 cut(s) 403
DriI GACNNNNNGTC 1 cut(s) 160
EaeI YGGCCR 1 cut(s) 326
Eam1104I CTCTTC 3 cut(s) 31, 131, 187
Eam1105I GACNNNNNGTC 1 cut(s) 160
EarI CTCTTC 3 cut(s) 31, 131, 187
Eco130I CCWWGG 2 cut(s) 150, 267
Eco47I GGWCC 1 cut(s) 147
Eco57I CTGAAG 2 cut(s) 59, 222
EcoRII CCWGG 1 cut(s) 391
EcoT14I CCWWGG 2 cut(s) 150, 267
ErhI CCWWGG 2 cut(s) 150, 267
FaeI CATG 1 cut(s) 147
FaiI YATR 6 cut(s) 145, 189, 212, 219, 302, 421
FaqI GGGAC 2 cut(s) 148, 382
FatI CATG 1 cut(s) 143
FokI GGATG 1 cut(s) 317
FspBI CTAG 2 cut(s) 33, 240
HaeIII GGCC 1 cut(s) 328
HgaI GACGC 1 cut(s) 182
Hin1II CATG 1 cut(s) 147
HincII GTYRAC 1 cut(s) 21
HindII GTYRAC 1 cut(s) 21
HinfI GANTC 1 cut(s) 227
HpaI GTTAAC 1 cut(s) 21
HphI GGTGA 1 cut(s) 84
Hpy166II GTNNAC 2 cut(s) 21, 92
Hpy188I TCNGA 1 cut(s) 134
Hpy188III TCNNGA 1 cut(s) 350
Hpy8I GTNNAC 2 cut(s) 21, 92
Hpy99I CGWCG 1 cut(s) 134
HpyAV CCTTC 1 cut(s) 398
HpyCH4III ACNGT 2 cut(s) 99, 373
HpyCH4V TGCA 1 cut(s) 290
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 287, 296, 393
HpyF3I CTNAG 2 cut(s) 229, 332
Hsp92II CATG 1 cut(s) 147
KspAI GTTAAC 1 cut(s) 21
Kzo9I GATC 1 cut(s) 403
LguI GCTCTTC 2 cut(s) 31, 131
LmnI GCTCC 1 cut(s) 30
LpnPI CCDG 7 cut(s) 33, 179, 179, 216, 220, 378, 405
LweI GCATC 4 cut(s) 50, 71, 268, 286
MaeI CTAG 2 cut(s) 33, 240
MaeIII GTNAC 2 cut(s) 196, 205
MalI GATC 1 cut(s) 405
MboI GATC 1 cut(s) 403
MboII GAAGA 8 cut(s) 48, 93, 96, 99, 102, 118, 174, 284
MluCI AATT 2 cut(s) 66, 259
MlyI GAGTC 1 cut(s) 221
MmeI TCCRAC 1 cut(s) 112
MnlI CCTC 4 cut(s) 128, 327, 359, 393
MroXI GAANNNNTTC 1 cut(s) 357
MseI TTAA 2 cut(s) 20, 411
MslI CAYNNNNRTG 1 cut(s) 203
MspR9I CCNGG 1 cut(s) 393
MvaI CCWGG 1 cut(s) 393
MwoI GCNNNNNNNGC 4 cut(s) 38, 287, 296, 393
NdeII GATC 1 cut(s) 403
NlaIII CATG 1 cut(s) 147
NmuCI GTSAC 2 cut(s) 196, 205
OliI CACNNNNGTG 1 cut(s) 203
PciSI GCTCTTC 2 cut(s) 31, 131
PdmI GAANNNNTTC 1 cut(s) 357
PflMI CCANNNNNTGG 1 cut(s) 398
PleI GAGTC 1 cut(s) 221
PpsI GAGTC 1 cut(s) 221
Psp6I CCWGG 1 cut(s) 391
PspGI CCWGG 1 cut(s) 391
PspPI GGNCC 1 cut(s) 147
RseI CAYNNNNRTG 1 cut(s) 203
SapI GCTCTTC 2 cut(s) 31, 131
SaqAI TTAA 2 cut(s) 20, 411
Sau3AI GATC 1 cut(s) 403
Sau96I GGNCC 1 cut(s) 147
SchI GAGTC 1 cut(s) 221
ScrFI CCNGG 1 cut(s) 393
SetI ASST 3 cut(s) 126, 198, 239
SfaNI GCATC 4 cut(s) 50, 71, 268, 286
SfcI CTRYAG 2 cut(s) 210, 372
SinI GGWCC 1 cut(s) 147
SmiMI CAYNNNNRTG 1 cut(s) 203
Sse9I AATT 2 cut(s) 66, 259
SspMI CTAG 2 cut(s) 33, 240
StyD4I CCNGG 1 cut(s) 391
StyI CCWWGG 2 cut(s) 150, 267
TaaI ACNGT 2 cut(s) 99, 373
TaqI TCGA 1 cut(s) 351
TasI AATT 2 cut(s) 66, 259
Tru1I TTAA 2 cut(s) 20, 411
Tru9I TTAA 2 cut(s) 20, 411
TscAI CASTG 2 cut(s) 205, 336
TseFI GTSAC 2 cut(s) 196, 205
Tsp45I GTSAC 2 cut(s) 196, 205
TspRI CASTG 2 cut(s) 205, 336
Van91I CCANNNNNTGG 1 cut(s) 398
VpaK11BI GGWCC 1 cut(s) 147
XapI RAATTY 1 cut(s) 259
XmnI GAANNNNTTC 1 cut(s) 357
XspI CTAG 2 cut(s) 33, 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.