Rh2BG547900

Glycine-rich RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0004164
Physical Location & Seq
Forward (+)
75706914 .. 75709428
2515 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG547900.1

Sequence Viewer

Length: 375 bp
ATGCTGAACAACACTCTGTTAACGCTCCTTGCTAGAAGAGCATCAACAGGGGTAAATCAAAACACAATTTTACTTCGGCGATGCTTCTGTTCACCACCGTCTTCTTCTTCAAACAATAAGCTCTTCGTCGGAGGCTTGTCATGGTCCTTGGACGAGAAGTCCCTGAAAGACGCTTTCTCTTCTTATGGGGAGGTCACTGAAGTGACTATAGTGTATGACAAGGACTCAGGCAGGTCTAGAGGCTTTGGATTTGTAAATTTCTCCAAGGAAGATGATGCCAAGTCTGCAAAAGATGCTATGGATGGAAAGGTGAGTGGGACTTACAGTTTCTTTTCTCATACCAAAGTTTGCTGTTTGGAAATGTCTTCTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

124

Amino Acids

13.59

Weight (kDa)

7.63

Isoelectric Point (pI)

43.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 41 - 104 1.8e-21 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 222
AcsI RAATTY 1 cut(s) 256
AcuI CTGAAG 1 cut(s) 219
AgsI TTSAA 1 cut(s) 111
AhdI GACNNNNNGTC 1 cut(s) 157
AleI CACNNNNGTG 1 cut(s) 200
AluBI AGCT 1 cut(s) 121
AluI AGCT 1 cut(s) 121
ApoI RAATTY 1 cut(s) 256
AspS9I GGNCC 1 cut(s) 144
AsuHPI GGTGA 2 cut(s) 84, 322
AvaII GGWCC 1 cut(s) 144
BbsI GAAGAC 2 cut(s) 93, 357
BccI CCATC 1 cut(s) 296
BfaI CTAG 2 cut(s) 33, 237
BfmI CTRYAG 1 cut(s) 207
BfuAI ACCTGC 1 cut(s) 222
Bme18I GGWCC 1 cut(s) 144
BmeRI GACNNNNNGTC 1 cut(s) 157
BmgT120I GGNCC 1 cut(s) 144
BmsI GCATC 4 cut(s) 50, 71, 265, 283
BpiI GAAGAC 2 cut(s) 93, 357
BsaJI CCNNGG 2 cut(s) 147, 264
BseDI CCNNGG 2 cut(s) 147, 264
BseGI GGATG 1 cut(s) 307
BseMII CTCAG 1 cut(s) 240
BslFI GGGAC 2 cut(s) 145, 331
BsmFI GGGAC 2 cut(s) 145, 331
BspCNI CTCAG 1 cut(s) 239
BspMI ACCTGC 1 cut(s) 222
BspQI GCTCTTC 2 cut(s) 31, 128
BssECI CCNNGG 2 cut(s) 147, 264
BssT1I CCWWGG 2 cut(s) 147, 264
Bst4CI ACNGT 2 cut(s) 99, 326
Bst6I CTCTTC 3 cut(s) 31, 128, 184
BstAPI GCANNNNNTGC 1 cut(s) 293
BstDEI CTNAG 1 cut(s) 226
BstF5I GGATG 1 cut(s) 307
BstMWI GCNNNNNNNGC 3 cut(s) 38, 284, 293
BstSFI CTRYAG 1 cut(s) 207
BstV2I GAAGAC 2 cut(s) 93, 357
BtgZI GCGATG 1 cut(s) 94
BtsCI GGATG 1 cut(s) 307
BtsIMutI CAGTG 1 cut(s) 195
BveI ACCTGC 1 cut(s) 222
Cfr13I GGNCC 1 cut(s) 144
CseI GACGC 1 cut(s) 179
CviAII CATG 1 cut(s) 141
CviJI RGCY 3 cut(s) 121, 135, 243
CviKI_1 RGCY 3 cut(s) 121, 135, 243
DdeI CTNAG 1 cut(s) 226
DriI GACNNNNNGTC 1 cut(s) 157
Eam1104I CTCTTC 3 cut(s) 31, 128, 184
Eam1105I GACNNNNNGTC 1 cut(s) 157
EarI CTCTTC 3 cut(s) 31, 128, 184
Eco130I CCWWGG 2 cut(s) 147, 264
Eco47I GGWCC 1 cut(s) 144
Eco57I CTGAAG 1 cut(s) 219
EcoT14I CCWWGG 2 cut(s) 147, 264
ErhI CCWWGG 2 cut(s) 147, 264
FaeI CATG 1 cut(s) 144
FaiI YATR 6 cut(s) 142, 186, 209, 216, 299, 339
FaqI GGGAC 2 cut(s) 145, 331
FatI CATG 1 cut(s) 140
FokI GGATG 1 cut(s) 314
FspBI CTAG 2 cut(s) 33, 237
HgaI GACGC 1 cut(s) 179
Hin1II CATG 1 cut(s) 144
HincII GTYRAC 1 cut(s) 21
HindII GTYRAC 1 cut(s) 21
HinfI GANTC 1 cut(s) 224
HpaI GTTAAC 1 cut(s) 21
HphI GGTGA 2 cut(s) 84, 322
Hpy166II GTNNAC 2 cut(s) 21, 92
Hpy188I TCNGA 2 cut(s) 131, 370
Hpy188III TCNNGA 1 cut(s) 237
Hpy8I GTNNAC 2 cut(s) 21, 92
Hpy99I CGWCG 1 cut(s) 131
HpyCH4III ACNGT 2 cut(s) 99, 326
HpyCH4V TGCA 1 cut(s) 287
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 284, 293
HpyF3I CTNAG 1 cut(s) 226
Hsp92II CATG 1 cut(s) 144
KspAI GTTAAC 1 cut(s) 21
LguI GCTCTTC 2 cut(s) 31, 128
LmnI GCTCC 1 cut(s) 30
LpnPI CCDG 4 cut(s) 33, 176, 213, 217
LweI GCATC 4 cut(s) 50, 71, 265, 283
MaeI CTAG 2 cut(s) 33, 237
MaeIII GTNAC 2 cut(s) 193, 202
MboII GAAGA 8 cut(s) 48, 93, 96, 99, 115, 171, 281, 357
MluCI AATT 2 cut(s) 66, 256
MlyI GAGTC 1 cut(s) 218
MmeI TCCRAC 1 cut(s) 109
MnlI CCTC 3 cut(s) 125, 184, 233
MseI TTAA 1 cut(s) 20
MslI CAYNNNNRTG 1 cut(s) 200
MwoI GCNNNNNNNGC 3 cut(s) 38, 284, 293
NlaIII CATG 1 cut(s) 144
NmuCI GTSAC 2 cut(s) 193, 202
OliI CACNNNNGTG 1 cut(s) 200
PciSI GCTCTTC 2 cut(s) 31, 128
PleI GAGTC 1 cut(s) 218
PpsI GAGTC 1 cut(s) 218
PspPI GGNCC 1 cut(s) 144
RseI CAYNNNNRTG 1 cut(s) 200
SapI GCTCTTC 2 cut(s) 31, 128
SaqAI TTAA 1 cut(s) 20
Sau96I GGNCC 1 cut(s) 144
SchI GAGTC 1 cut(s) 218
SetI ASST 4 cut(s) 123, 195, 236, 312
SfaNI GCATC 4 cut(s) 50, 71, 265, 283
SfcI CTRYAG 1 cut(s) 207
SinI GGWCC 1 cut(s) 144
SmiMI CAYNNNNRTG 1 cut(s) 200
Sse9I AATT 2 cut(s) 66, 256
SspMI CTAG 2 cut(s) 33, 237
StyI CCWWGG 2 cut(s) 147, 264
TaaI ACNGT 2 cut(s) 99, 326
TasI AATT 2 cut(s) 66, 256
Tru1I TTAA 1 cut(s) 20
Tru9I TTAA 1 cut(s) 20
TscAI CASTG 1 cut(s) 202
TseFI GTSAC 2 cut(s) 193, 202
Tsp45I GTSAC 2 cut(s) 193, 202
TspRI CASTG 1 cut(s) 202
VpaK11BI GGWCC 1 cut(s) 144
XapI RAATTY 1 cut(s) 256
XbaI TCTAGA 1 cut(s) 236
XspI CTAG 2 cut(s) 33, 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.