Rh2BG547500

Glycine-rich RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0004164
Physical Location & Seq
Forward (+)
75697937 .. 75698837
901 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG547500.1

Sequence Viewer

Length: 396 bp
ATGCTGAACAACAGTTTGTTAACGTTCATTGCTAGAAGAGCATCAACAGCAGCAAATCAAAACCCCCCAATTTTACTTCATCGATGCTTCTGTTCACCACCGTCTTCTTCTTCTTCTTCCTCTCCTCCCCCAAACAATAAGCTCTTCGTCGGAGGCTTGTCGTGGTCGTTGGACGAGAAGTCCCTGAAAGACGCTTTCTCTTCCTATGGAGAGGTCACTGAAGTGACTATAGTGTATGACAAGGACTCAGGCAGGTCTAGAGGCTTTGGATTTGTAAATTTCTCCAAGGAAGATGATGCCAAGTCTGCAAAAGATGCTATGGATGGAAAGGTGAGTGGGACTTACAGTTTCTTTTCACATACCAAAGTTTGCTGTTTGGAAATGTCTTCTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

131

Amino Acids

14.22

Weight (kDa)

6.72

Isoelectric Point (pI)

50.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 48 - 111 2.1e-21 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 243
AclI AACGTT 1 cut(s) 23
AcsI RAATTY 1 cut(s) 277
AcuI CTGAAG 1 cut(s) 240
AhdI GACNNNNNGTC 1 cut(s) 178
AleI CACNNNNGTG 1 cut(s) 221
AluBI AGCT 1 cut(s) 142
AluI AGCT 1 cut(s) 142
ApeKI GCWGC 1 cut(s) 50
ApoI RAATTY 1 cut(s) 277
AsuHPI GGTGA 2 cut(s) 87, 343
BbsI GAAGAC 2 cut(s) 96, 378
BbvI GCAGC 1 cut(s) 62
BccI CCATC 1 cut(s) 317
BfaI CTAG 2 cut(s) 33, 258
BfmI CTRYAG 1 cut(s) 228
BfuAI ACCTGC 1 cut(s) 243
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
BmeRI GACNNNNNGTC 1 cut(s) 178
BmsI GCATC 4 cut(s) 50, 74, 286, 304
BpiI GAAGAC 2 cut(s) 96, 378
Bsa29I ATCGAT 1 cut(s) 82
BsaJI CCNNGG 1 cut(s) 285
Bse3DI GCAATG 1 cut(s) 27
BseCI ATCGAT 1 cut(s) 82
BseDI CCNNGG 1 cut(s) 285
BseGI GGATG 1 cut(s) 328
BseMI GCAATG 1 cut(s) 27
BseMII CTCAG 1 cut(s) 261
BseRI GAGGAG 1 cut(s) 114
BseXI GCAGC 1 cut(s) 62
BshVI ATCGAT 1 cut(s) 82
BslFI GGGAC 2 cut(s) 166, 352
BsmFI GGGAC 2 cut(s) 166, 352
BspCNI CTCAG 1 cut(s) 260
BspDI ATCGAT 1 cut(s) 82
BspMI ACCTGC 1 cut(s) 243
BspQI GCTCTTC 2 cut(s) 31, 149
BsrDI GCAATG 1 cut(s) 27
BssECI CCNNGG 1 cut(s) 285
BssT1I CCWWGG 1 cut(s) 285
Bst4CI ACNGT 3 cut(s) 14, 102, 347
Bst6I CTCTTC 3 cut(s) 31, 149, 205
BstAPI GCANNNNNTGC 1 cut(s) 314
BstDEI CTNAG 1 cut(s) 247
BstF5I GGATG 1 cut(s) 328
BstMWI GCNNNNNNNGC 4 cut(s) 38, 47, 305, 314
BstSFI CTRYAG 1 cut(s) 228
BstV1I GCAGC 1 cut(s) 62
BstV2I GAAGAC 2 cut(s) 96, 378
Bsu15I ATCGAT 1 cut(s) 82
BsuTUI ATCGAT 1 cut(s) 82
BtsCI GGATG 1 cut(s) 328
BtsIMutI CAGTG 1 cut(s) 216
BveI ACCTGC 1 cut(s) 243
ClaI ATCGAT 1 cut(s) 82
CseI GACGC 1 cut(s) 200
CviJI RGCY 3 cut(s) 142, 156, 264
CviKI_1 RGCY 3 cut(s) 142, 156, 264
DdeI CTNAG 1 cut(s) 247
DriI GACNNNNNGTC 1 cut(s) 178
Eam1104I CTCTTC 3 cut(s) 31, 149, 205
Eam1105I GACNNNNNGTC 1 cut(s) 178
EarI CTCTTC 3 cut(s) 31, 149, 205
Eco130I CCWWGG 1 cut(s) 285
Eco57I CTGAAG 1 cut(s) 240
EcoT14I CCWWGG 1 cut(s) 285
ErhI CCWWGG 1 cut(s) 285
FaiI YATR 5 cut(s) 207, 230, 237, 320, 360
FaqI GGGAC 2 cut(s) 166, 352
Fnu4HI GCNGC 1 cut(s) 51
FokI GGATG 1 cut(s) 335
Fsp4HI GCNGC 1 cut(s) 51
FspBI CTAG 2 cut(s) 33, 258
GluI GCNGC 1 cut(s) 51
HgaI GACGC 1 cut(s) 200
HincII GTYRAC 1 cut(s) 21
HindII GTYRAC 1 cut(s) 21
HinfI GANTC 1 cut(s) 245
HpaI GTTAAC 1 cut(s) 21
HphI GGTGA 2 cut(s) 87, 343
Hpy166II GTNNAC 2 cut(s) 21, 95
Hpy188I TCNGA 2 cut(s) 152, 391
Hpy188III TCNNGA 1 cut(s) 258
Hpy8I GTNNAC 2 cut(s) 21, 95
Hpy99I CGWCG 1 cut(s) 152
HpyCH4III ACNGT 3 cut(s) 14, 102, 347
HpyCH4IV ACGT 1 cut(s) 23
HpyCH4V TGCA 1 cut(s) 308
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 47, 305, 314
HpyF3I CTNAG 1 cut(s) 247
HpySE526I ACGT 1 cut(s) 23
KspAI GTTAAC 1 cut(s) 21
LguI GCTCTTC 2 cut(s) 31, 149
LpnPI CCDG 3 cut(s) 197, 234, 238
Lsp1109I GCAGC 1 cut(s) 62
LweI GCATC 4 cut(s) 50, 74, 286, 304
MaeI CTAG 2 cut(s) 33, 258
MaeII ACGT 1 cut(s) 23
MaeIII GTNAC 2 cut(s) 214, 223
MluCI AATT 2 cut(s) 69, 277
MlyI GAGTC 1 cut(s) 239
MmeI TCCRAC 2 cut(s) 130, 150
MnlI CCTC 5 cut(s) 130, 135, 146, 205, 254
MseI TTAA 1 cut(s) 20
MslI CAYNNNNRTG 1 cut(s) 221
MwoI GCNNNNNNNGC 4 cut(s) 38, 47, 305, 314
NmuCI GTSAC 2 cut(s) 214, 223
OliI CACNNNNGTG 1 cut(s) 221
PciSI GCTCTTC 2 cut(s) 31, 149
PkrI GCNGC 1 cut(s) 52
PleI GAGTC 1 cut(s) 239
PpsI GAGTC 1 cut(s) 239
Psp1406I AACGTT 1 cut(s) 23
RseI CAYNNNNRTG 1 cut(s) 221
SapI GCTCTTC 2 cut(s) 31, 149
SaqAI TTAA 1 cut(s) 20
SatI GCNGC 1 cut(s) 51
SchI GAGTC 1 cut(s) 239
SetI ASST 5 cut(s) 26, 144, 216, 257, 333
SfaNI GCATC 4 cut(s) 50, 74, 286, 304
SfcI CTRYAG 1 cut(s) 228
SmiMI CAYNNNNRTG 1 cut(s) 221
Sse9I AATT 2 cut(s) 69, 277
SspMI CTAG 2 cut(s) 33, 258
StyI CCWWGG 1 cut(s) 285
TaaI ACNGT 3 cut(s) 14, 102, 347
TaiI ACGT 1 cut(s) 26
TaqI TCGA 1 cut(s) 82
TasI AATT 2 cut(s) 69, 277
Tru1I TTAA 1 cut(s) 20
Tru9I TTAA 1 cut(s) 20
TscAI CASTG 1 cut(s) 223
TseFI GTSAC 2 cut(s) 214, 223
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 2 cut(s) 214, 223
TspDTI ATGAA 2 cut(s) 16, 68
TspRI CASTG 1 cut(s) 223
XapI RAATTY 1 cut(s) 277
XbaI TCTAGA 1 cut(s) 257
XspI CTAG 2 cut(s) 33, 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.