RchiOBHm_Chr4g0419191

Glycine-rich RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0004164
Physical Location & Seq
Forward (+)
44687140 .. 44687897
758 bp
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UTR
Exon/CDS
Intron
PRQ38913

Sequence Viewer

Length: 510 bp
ATGCTGAACAACACTCTGTTAACGCTCCTTGCTAGAAGAGCATCAACAGGAGTAAATCAAAACCCAATTTTACTTCAGCGATGCTTCTGTTCACCACTGTCTTCTTCTTCAAACAATAAGCTCTTCGTCGGAGGTCTGCCTCAGTTTTCAAACAAGTTGAAGGACCTCAACTTTTCTTCAGTAAAGCGTGTTTCTAATGTGACATGGGTTTTGCATCTTGCAGGCTTGTCATGGTCCTTGGACGAGAAGTCCCTGAAAGACGCTTTCTCTTCCTATGGGGAGGTCACTGAAGTGACTATAGTGTATGACAAGGACTCAGGCAGGTCTAGAGGCTTTGGATTTGTTAATTTCTCCAAGGACGATGATGCCAAGTCTGCAAAAGATGCTATGGATGGAAAGGCGTTGATGGGTCGGCCACTGAGGATTAGTTTTGCTCTCGAAAGACTTCGGGGAGGGACTGTAGTTGTTCCTCGCCTTCCAGCCATTGGAGATGGTGTTAATCGCTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

169

Amino Acids

18.44

Weight (kDa)

9.82

Isoelectric Point (pI)

35.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 74 - 141 6.3e-20 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 312
AccB7I CCANNNNNTGG 1 cut(s) 485
AcoI YGGCCR 1 cut(s) 413
AcuI CTGAAG 3 cut(s) 59, 162, 309
AfiI CCNNNNNNNGG 1 cut(s) 485
AgsI TTSAA 3 cut(s) 111, 150, 160
AhdI GACNNNNNGTC 1 cut(s) 247
AleI CACNNNNGTG 1 cut(s) 290
AluBI AGCT 1 cut(s) 121
AluI AGCT 1 cut(s) 121
AoxI GGCC 1 cut(s) 413
ArsI GACNNNNNNTTYG 2 cut(s) 193, 225
Asp700I GAANNNNTTC 1 cut(s) 444
AspS9I GGNCC 2 cut(s) 163, 234
AsuHPI GGTGA 1 cut(s) 84
AvaII GGWCC 2 cut(s) 163, 234
BbsI GAAGAC 1 cut(s) 93
BccI CCATC 3 cut(s) 386, 400, 485
BfaI CTAG 2 cut(s) 33, 327
BfmI CTRYAG 2 cut(s) 297, 459
BfuAI ACCTGC 1 cut(s) 312
Bme18I GGWCC 2 cut(s) 163, 234
BmeRI GACNNNNNGTC 1 cut(s) 247
BmgT120I GGNCC 2 cut(s) 163, 234
BmsI GCATC 5 cut(s) 50, 71, 223, 355, 373
BpiI GAAGAC 1 cut(s) 93
BsaJI CCNNGG 2 cut(s) 237, 354
BsaXI ACNNNNNCTCC 4 cut(s) 444, 474, 480, 510
Bsc4I CCNNNNNNNGG 1 cut(s) 485
BseDI CCNNGG 2 cut(s) 237, 354
BseGI GGATG 1 cut(s) 397
BseLI CCNNNNNNNGG 1 cut(s) 485
BseMII CTCAG 3 cut(s) 155, 330, 410
BshFI GGCC 1 cut(s) 415
BslFI GGGAC 2 cut(s) 235, 469
BslI CCNNNNNNNGG 1 cut(s) 485
BsmFI GGGAC 2 cut(s) 235, 469
BsnI GGCC 1 cut(s) 415
BspANI GGCC 1 cut(s) 415
BspCNI CTCAG 3 cut(s) 154, 329, 411
BspMI ACCTGC 1 cut(s) 312
BspQI GCTCTTC 2 cut(s) 31, 128
BssECI CCNNGG 2 cut(s) 237, 354
BssT1I CCWWGG 2 cut(s) 237, 354
Bst4CI ACNGT 2 cut(s) 99, 460
Bst6I CTCTTC 3 cut(s) 31, 128, 274
BstAPI GCANNNNNTGC 1 cut(s) 383
BstC8I GCNNGC 1 cut(s) 223
BstDEI CTNAG 3 cut(s) 141, 316, 419
BstF5I GGATG 1 cut(s) 397
BstMWI GCNNNNNNNGC 3 cut(s) 38, 374, 383
BstSFI CTRYAG 2 cut(s) 297, 459
BstV2I GAAGAC 1 cut(s) 93
BsuRI GGCC 1 cut(s) 415
BtgZI GCGATG 1 cut(s) 94
BtsCI GGATG 1 cut(s) 397
BtsIMutI CAGTG 3 cut(s) 95, 285, 416
BveI ACCTGC 1 cut(s) 312
Cac8I GCNNGC 1 cut(s) 223
Cfr13I GGNCC 2 cut(s) 163, 234
CseI GACGC 1 cut(s) 269
CviAII CATG 2 cut(s) 204, 231
CviJI RGCY 5 cut(s) 121, 225, 333, 415, 482
CviKI_1 RGCY 5 cut(s) 121, 225, 333, 415, 482
DdeI CTNAG 3 cut(s) 141, 316, 419
DriI GACNNNNNGTC 1 cut(s) 247
EaeI YGGCCR 1 cut(s) 413
Eam1104I CTCTTC 3 cut(s) 31, 128, 274
Eam1105I GACNNNNNGTC 1 cut(s) 247
EarI CTCTTC 3 cut(s) 31, 128, 274
Eco130I CCWWGG 2 cut(s) 237, 354
Eco47I GGWCC 2 cut(s) 163, 234
Eco57I CTGAAG 3 cut(s) 59, 162, 309
EcoO109I RGGNCCY 1 cut(s) 163
EcoT14I CCWWGG 2 cut(s) 237, 354
ErhI CCWWGG 2 cut(s) 237, 354
FaeI CATG 2 cut(s) 207, 234
FaiI YATR 7 cut(s) 205, 232, 276, 299, 306, 389, 508
FaqI GGGAC 2 cut(s) 235, 469
FatI CATG 2 cut(s) 203, 230
FokI GGATG 1 cut(s) 404
FspBI CTAG 2 cut(s) 33, 327
HaeIII GGCC 1 cut(s) 415
HgaI GACGC 1 cut(s) 269
Hin1II CATG 2 cut(s) 207, 234
HincII GTYRAC 1 cut(s) 21
HindII GTYRAC 1 cut(s) 21
HinfI GANTC 1 cut(s) 314
HpaI GTTAAC 1 cut(s) 21
HphI GGTGA 1 cut(s) 84
Hpy166II GTNNAC 2 cut(s) 21, 92
Hpy188I TCNGA 1 cut(s) 131
Hpy188III TCNNGA 2 cut(s) 327, 437
Hpy8I GTNNAC 2 cut(s) 21, 92
Hpy99I CGWCG 1 cut(s) 131
HpyAV CCTTC 2 cut(s) 154, 485
HpyCH4III ACNGT 2 cut(s) 99, 460
HpyCH4V TGCA 3 cut(s) 214, 221, 377
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 374, 383
HpyF3I CTNAG 3 cut(s) 141, 316, 419
Hsp92II CATG 2 cut(s) 207, 234
KspAI GTTAAC 1 cut(s) 21
LguI GCTCTTC 2 cut(s) 31, 128
LmnI GCTCC 1 cut(s) 30
LpnPI CCDG 6 cut(s) 33, 207, 266, 303, 307, 492
LweI GCATC 5 cut(s) 50, 71, 223, 355, 373
MaeI CTAG 2 cut(s) 33, 327
MaeIII GTNAC 3 cut(s) 199, 283, 292
MboII GAAGA 7 cut(s) 48, 93, 96, 99, 115, 168, 261
MluCI AATT 2 cut(s) 66, 346
MlyI GAGTC 1 cut(s) 308
MmeI TCCRAC 1 cut(s) 109
MnlI CCTC 8 cut(s) 125, 150, 176, 274, 323, 414, 446, 480
MroXI GAANNNNTTC 1 cut(s) 444
MseI TTAA 3 cut(s) 20, 345, 498
MslI CAYNNNNRTG 1 cut(s) 290
MwoI GCNNNNNNNGC 3 cut(s) 38, 374, 383
NlaIII CATG 2 cut(s) 207, 234
NmuCI GTSAC 3 cut(s) 199, 283, 292
OliI CACNNNNGTG 1 cut(s) 290
PciSI GCTCTTC 2 cut(s) 31, 128
PdmI GAANNNNTTC 1 cut(s) 444
PflMI CCANNNNNTGG 1 cut(s) 485
PleI GAGTC 1 cut(s) 308
PpsI GAGTC 1 cut(s) 308
PpuMI RGGWCCY 1 cut(s) 163
Psp5II RGGWCCY 1 cut(s) 163
PspPI GGNCC 2 cut(s) 163, 234
PspPPI RGGWCCY 1 cut(s) 163
RseI CAYNNNNRTG 1 cut(s) 290
SapI GCTCTTC 2 cut(s) 31, 128
SaqAI TTAA 3 cut(s) 20, 345, 498
Sau96I GGNCC 2 cut(s) 163, 234
SchI GAGTC 1 cut(s) 308
SetI ASST 5 cut(s) 123, 136, 168, 285, 326
SfaNI GCATC 5 cut(s) 50, 71, 223, 355, 373
SfcI CTRYAG 2 cut(s) 297, 459
SinI GGWCC 2 cut(s) 163, 234
SmiMI CAYNNNNRTG 1 cut(s) 290
Sse9I AATT 2 cut(s) 66, 346
SspMI CTAG 2 cut(s) 33, 327
StyI CCWWGG 2 cut(s) 237, 354
TaaI ACNGT 2 cut(s) 99, 460
TaqI TCGA 1 cut(s) 438
TasI AATT 2 cut(s) 66, 346
Tru1I TTAA 3 cut(s) 20, 345, 498
Tru9I TTAA 3 cut(s) 20, 345, 498
TscAI CASTG 3 cut(s) 102, 292, 423
TseFI GTSAC 3 cut(s) 199, 283, 292
Tsp45I GTSAC 3 cut(s) 199, 283, 292
TspRI CASTG 3 cut(s) 102, 292, 423
Van91I CCANNNNNTGG 1 cut(s) 485
VpaK11BI GGWCC 2 cut(s) 163, 234
XbaI TCTAGA 1 cut(s) 326
XmnI GAANNNNTTC 1 cut(s) 444
XspI CTAG 2 cut(s) 33, 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.