Rh2DG557100

Glycine-rich RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0004164
Physical Location & Seq
Forward (+)
78674859 .. 78675638
780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG557100.1

Sequence Viewer

Length: 438 bp
ATGCTGAACAACAGTTTGTTAACGTTCCTTGCTAGAAGAGCATCAACAACAGCAAATCAAAACCCACCAATTTTATTTCATCGATGCTTCTGTTCACCACCGTCTTCTTCTTCTTCCTCTCCTCCCCCAAACAATAAGCTCTTCGTCGGAGGCTTGTCGTGGTCGTTTGACGAGAAGTCCCTGAAAGACGCTTTCTCTTCCTATGGAGAGGTCACTGAAGTGACTATAGTGTATGACAAGGACTCAGGCAGGTCTAGAGGCTTTGGATTTGTTAATTTCTCCAAGGAAGATGATGCCAAGTCTGCAAAAGATGCTATGGATGGAAAGGCATTGATGGGTCGGCCACTGAGGATTAGTTTTGCTCTCGAAAGAGTTCGGGGAGGGACTGTAGTTGTTCCTCGCCTTCCAGGCATTGGAGATGGTGTTAATCGCTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

145

Amino Acids

15.71

Weight (kDa)

9.51

Isoelectric Point (pI)

48.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 47 - 117 5.3e-23 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 240
AccB7I CCANNNNNTGG 1 cut(s) 413
AclI AACGTT 1 cut(s) 23
AcoI YGGCCR 1 cut(s) 341
AcuI CTGAAG 1 cut(s) 237
AfiI CCNNNNNNNGG 1 cut(s) 413
AhdI GACNNNNNGTC 1 cut(s) 175
AjnI CCWGG 1 cut(s) 406
AleI CACNNNNGTG 1 cut(s) 218
AluBI AGCT 1 cut(s) 139
AluI AGCT 1 cut(s) 139
AoxI GGCC 1 cut(s) 341
Asp700I GAANNNNTTC 1 cut(s) 372
AsuHPI GGTGA 1 cut(s) 87
BbsI GAAGAC 1 cut(s) 96
BccI CCATC 3 cut(s) 314, 328, 413
BciT130I CCWGG 1 cut(s) 408
BfaI CTAG 2 cut(s) 33, 255
BfmI CTRYAG 2 cut(s) 225, 387
BfuAI ACCTGC 1 cut(s) 240
BglI GCCNNNNNGGC 1 cut(s) 408
Bme1390I CCNGG 1 cut(s) 408
BmeRI GACNNNNNGTC 1 cut(s) 175
BmrFI CCNGG 1 cut(s) 408
BmsI GCATC 4 cut(s) 50, 74, 283, 301
BpiI GAAGAC 1 cut(s) 96
Bsa29I ATCGAT 1 cut(s) 82
BsaJI CCNNGG 1 cut(s) 282
BsaXI ACNNNNNCTCC 4 cut(s) 372, 402, 408, 438
Bsc4I CCNNNNNNNGG 1 cut(s) 413
BseBI CCWGG 1 cut(s) 408
BseCI ATCGAT 1 cut(s) 82
BseDI CCNNGG 1 cut(s) 282
BseGI GGATG 1 cut(s) 325
BseLI CCNNNNNNNGG 1 cut(s) 413
BseMII CTCAG 2 cut(s) 258, 338
BseRI GAGGAG 1 cut(s) 111
BshFI GGCC 1 cut(s) 343
BshVI ATCGAT 1 cut(s) 82
BslFI GGGAC 2 cut(s) 163, 397
BslI CCNNNNNNNGG 1 cut(s) 413
BsmFI GGGAC 2 cut(s) 163, 397
BsnI GGCC 1 cut(s) 343
BspANI GGCC 1 cut(s) 343
BspCNI CTCAG 2 cut(s) 257, 339
BspDI ATCGAT 1 cut(s) 82
BspMI ACCTGC 1 cut(s) 240
BspQI GCTCTTC 2 cut(s) 31, 146
BssECI CCNNGG 1 cut(s) 282
BssT1I CCWWGG 1 cut(s) 282
Bst2UI CCWGG 1 cut(s) 408
Bst4CI ACNGT 3 cut(s) 14, 102, 388
Bst6I CTCTTC 3 cut(s) 31, 146, 202
BstAPI GCANNNNNTGC 1 cut(s) 311
BstDEI CTNAG 2 cut(s) 244, 347
BstF5I GGATG 1 cut(s) 325
BstMWI GCNNNNNNNGC 4 cut(s) 38, 302, 311, 408
BstNI CCWGG 1 cut(s) 408
BstSCI CCNGG 1 cut(s) 406
BstSFI CTRYAG 2 cut(s) 225, 387
BstV2I GAAGAC 1 cut(s) 96
Bsu15I ATCGAT 1 cut(s) 82
BsuRI GGCC 1 cut(s) 343
BsuTUI ATCGAT 1 cut(s) 82
BtsCI GGATG 1 cut(s) 325
BtsIMutI CAGTG 2 cut(s) 213, 344
BveI ACCTGC 1 cut(s) 240
ClaI ATCGAT 1 cut(s) 82
CseI GACGC 1 cut(s) 197
CviJI RGCY 4 cut(s) 139, 153, 261, 343
CviKI_1 RGCY 4 cut(s) 139, 153, 261, 343
DdeI CTNAG 2 cut(s) 244, 347
DriI GACNNNNNGTC 1 cut(s) 175
EaeI YGGCCR 1 cut(s) 341
Eam1104I CTCTTC 3 cut(s) 31, 146, 202
Eam1105I GACNNNNNGTC 1 cut(s) 175
EarI CTCTTC 3 cut(s) 31, 146, 202
Eco130I CCWWGG 1 cut(s) 282
Eco57I CTGAAG 1 cut(s) 237
EcoRII CCWGG 1 cut(s) 406
EcoT14I CCWWGG 1 cut(s) 282
ErhI CCWWGG 1 cut(s) 282
FaiI YATR 5 cut(s) 204, 227, 234, 317, 436
FaqI GGGAC 2 cut(s) 163, 397
FokI GGATG 1 cut(s) 332
FspBI CTAG 2 cut(s) 33, 255
HaeIII GGCC 1 cut(s) 343
HgaI GACGC 1 cut(s) 197
HincII GTYRAC 1 cut(s) 21
HindII GTYRAC 1 cut(s) 21
HinfI GANTC 1 cut(s) 242
HpaI GTTAAC 1 cut(s) 21
HphI GGTGA 1 cut(s) 87
Hpy166II GTNNAC 2 cut(s) 21, 95
Hpy188I TCNGA 1 cut(s) 149
Hpy188III TCNNGA 2 cut(s) 255, 365
Hpy8I GTNNAC 2 cut(s) 21, 95
Hpy99I CGWCG 1 cut(s) 149
HpyAV CCTTC 1 cut(s) 413
HpyCH4III ACNGT 3 cut(s) 14, 102, 388
HpyCH4IV ACGT 1 cut(s) 23
HpyCH4V TGCA 1 cut(s) 305
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 302, 311, 408
HpyF3I CTNAG 2 cut(s) 244, 347
HpySE526I ACGT 1 cut(s) 23
KspAI GTTAAC 1 cut(s) 21
LguI GCTCTTC 2 cut(s) 31, 146
LpnPI CCDG 5 cut(s) 194, 231, 235, 393, 420
LweI GCATC 4 cut(s) 50, 74, 283, 301
MaeI CTAG 2 cut(s) 33, 255
MaeII ACGT 1 cut(s) 23
MaeIII GTNAC 2 cut(s) 211, 220
MboII GAAGA 8 cut(s) 48, 96, 99, 102, 105, 133, 189, 299
MluCI AATT 2 cut(s) 69, 274
MlyI GAGTC 1 cut(s) 236
MmeI TCCRAC 1 cut(s) 127
MnlI CCTC 8 cut(s) 127, 132, 143, 202, 251, 342, 374, 408
MroXI GAANNNNTTC 1 cut(s) 372
MseI TTAA 3 cut(s) 20, 273, 426
MslI CAYNNNNRTG 1 cut(s) 218
MspR9I CCNGG 1 cut(s) 408
MvaI CCWGG 1 cut(s) 408
MwoI GCNNNNNNNGC 4 cut(s) 38, 302, 311, 408
NmuCI GTSAC 2 cut(s) 211, 220
OliI CACNNNNGTG 1 cut(s) 218
PciSI GCTCTTC 2 cut(s) 31, 146
PdmI GAANNNNTTC 1 cut(s) 372
PflMI CCANNNNNTGG 1 cut(s) 413
PleI GAGTC 1 cut(s) 236
PpsI GAGTC 1 cut(s) 236
Psp1406I AACGTT 1 cut(s) 23
Psp6I CCWGG 1 cut(s) 406
PspGI CCWGG 1 cut(s) 406
RseI CAYNNNNRTG 1 cut(s) 218
SapI GCTCTTC 2 cut(s) 31, 146
SaqAI TTAA 3 cut(s) 20, 273, 426
SchI GAGTC 1 cut(s) 236
ScrFI CCNGG 1 cut(s) 408
SetI ASST 4 cut(s) 26, 141, 213, 254
SfaNI GCATC 4 cut(s) 50, 74, 283, 301
SfcI CTRYAG 2 cut(s) 225, 387
SmiMI CAYNNNNRTG 1 cut(s) 218
Sse9I AATT 2 cut(s) 69, 274
SspMI CTAG 2 cut(s) 33, 255
StyD4I CCNGG 1 cut(s) 406
StyI CCWWGG 1 cut(s) 282
TaaI ACNGT 3 cut(s) 14, 102, 388
TaiI ACGT 1 cut(s) 26
TaqI TCGA 2 cut(s) 82, 366
TasI AATT 2 cut(s) 69, 274
Tru1I TTAA 3 cut(s) 20, 273, 426
Tru9I TTAA 3 cut(s) 20, 273, 426
TscAI CASTG 2 cut(s) 220, 351
TseFI GTSAC 2 cut(s) 211, 220
Tsp45I GTSAC 2 cut(s) 211, 220
TspDTI ATGAA 1 cut(s) 68
TspRI CASTG 2 cut(s) 220, 351
Van91I CCANNNNNTGG 1 cut(s) 413
XbaI TCTAGA 1 cut(s) 254
XmnI GAANNNNTTC 1 cut(s) 372
XspI CTAG 2 cut(s) 33, 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.