FvH4_6g42480

Glycine-rich RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0004164
Physical Location & Seq
Forward (+)
33104663 .. 33105837
1175 bp
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UTR
Exon/CDS
Intron
FvH4_6g42480.t2

Sequence Viewer

Length: 420 bp
ATGCGAAACAACACTTTGTTAACGTTCCTTGCAAGAAGAGCATCAACACCAGCAGCAAATCACAACCCAAGTTTACTTAAGCGATGCTTCTCGTCTTCATCTTCCTCACCGAACAATAAGCTCTTCGTCGGAGGCTTGTCATGGTCGTTGGACGAGAAGTCCCTGAAAGAGGCTTTCTCTTCCTATGGAGAGGTCACTGAAGTGACTATAGTGTATGACAAGGACTCAGGCAGGTCTAGAGGCTTTGGATTTGTTAATTTCTCCAGAGAAGATGATGCCAAGTCTGCAAAAGATGCTATGGATGGAAAGGCTTTGATGGGTCGGCCGCTGAGGATAAGTTTTGCTCTTGAAAGAGTTCGGGGAGGGCATGTAGTTGTTCCTCGCCTTCCAGGCATTGGAGACGGTGGTAATCGCTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

140

Amino Acids

15.1

Weight (kDa)

9.99

Isoelectric Point (pI)

46.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 41 - 111 5.9e-23 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 222
AccB7I CCANNNNNTGG 1 cut(s) 395
AciI CCGC 1 cut(s) 326
AclI AACGTT 1 cut(s) 23
AcoI YGGCCR 1 cut(s) 323
AcuI CTGAAG 1 cut(s) 219
AfiI CCNNNNNNNGG 2 cut(s) 169, 395
AflII CTTAAG 1 cut(s) 77
AgsI TTSAA 1 cut(s) 350
AhdI GACNNNNNGTC 1 cut(s) 157
AjnI CCWGG 1 cut(s) 388
AleI CACNNNNGTG 1 cut(s) 200
AluBI AGCT 1 cut(s) 121
AluI AGCT 1 cut(s) 121
Alw26I GTCTC 1 cut(s) 393
AoxI GGCC 1 cut(s) 323
ApeKI GCWGC 1 cut(s) 53
Asp700I GAANNNNTTC 1 cut(s) 354
AsuHPI GGTGA 1 cut(s) 99
BbsI GAAGAC 1 cut(s) 87
BbvCI CCTCAGC 1 cut(s) 329
BbvI GCAGC 1 cut(s) 65
BccI CCATC 2 cut(s) 296, 310
BciT130I CCWGG 1 cut(s) 390
BcoDI GTCTC 1 cut(s) 393
BfaI CTAG 1 cut(s) 237
BfmI CTRYAG 1 cut(s) 207
BfrI CTTAAG 1 cut(s) 77
BfuAI ACCTGC 1 cut(s) 222
BglI GCCNNNNNGGC 1 cut(s) 390
BisI GCNGC 2 cut(s) 54, 326
BlsI GCNGC 2 cut(s) 55, 327
Bme1390I CCNGG 1 cut(s) 390
BmeRI GACNNNNNGTC 1 cut(s) 157
BmrFI CCNGG 1 cut(s) 390
BmsI GCATC 4 cut(s) 50, 74, 265, 283
BpiI GAAGAC 1 cut(s) 87
BplI GAGNNNNNCTC 2 cut(s) 161, 193
BpmI CTGGAG 1 cut(s) 247
Bpu10I CCTNAGC 1 cut(s) 329
BsaXI ACNNNNNCTCC 2 cut(s) 354, 384
Bsc4I CCNNNNNNNGG 2 cut(s) 169, 395
BseBI CCWGG 1 cut(s) 390
BseGI GGATG 1 cut(s) 307
BseLI CCNNNNNNNGG 2 cut(s) 169, 395
BseMII CTCAG 2 cut(s) 240, 320
BseX3I CGGCCG 1 cut(s) 323
BseXI GCAGC 1 cut(s) 65
Bsh1285I CGRYCG 1 cut(s) 326
BshFI GGCC 1 cut(s) 325
BsiEI CGRYCG 1 cut(s) 326
BslFI GGGAC 1 cut(s) 145
BslI CCNNNNNNNGG 2 cut(s) 169, 395
BsmAI GTCTC 1 cut(s) 393
BsmBI CGTCTC 1 cut(s) 393
BsmFI GGGAC 1 cut(s) 145
BsnI GGCC 1 cut(s) 325
BspACI CCGC 1 cut(s) 326
BspANI GGCC 1 cut(s) 325
BspCNI CTCAG 2 cut(s) 239, 321
BspMI ACCTGC 1 cut(s) 222
BspQI GCTCTTC 2 cut(s) 31, 128
BspTI CTTAAG 1 cut(s) 77
Bst2UI CCWGG 1 cut(s) 390
Bst4CI ACNGT 1 cut(s) 404
Bst6I CTCTTC 3 cut(s) 31, 128, 184
BstAFI CTTAAG 1 cut(s) 77
BstAPI GCANNNNNTGC 1 cut(s) 293
BstDEI CTNAG 2 cut(s) 226, 329
BstENI CCTNNNNNAGG 1 cut(s) 167
BstF5I GGATG 1 cut(s) 307
BstMAI GTCTC 1 cut(s) 393
BstMCI CGRYCG 1 cut(s) 326
BstMWI GCNNNNNNNGC 4 cut(s) 38, 284, 293, 390
BstNI CCWGG 1 cut(s) 390
BstNSI RCATGY 1 cut(s) 371
BstSCI CCNGG 1 cut(s) 388
BstSFI CTRYAG 1 cut(s) 207
BstV1I GCAGC 1 cut(s) 65
BstV2I GAAGAC 1 cut(s) 87
BstZI CGGCCG 1 cut(s) 323
BsuRI GGCC 1 cut(s) 325
BtgZI GCGATG 1 cut(s) 97
BtsCI GGATG 1 cut(s) 307
BtsIMutI CAGTG 1 cut(s) 195
BveI ACCTGC 1 cut(s) 222
CviAII CATG 2 cut(s) 141, 368
CviJI RGCY 6 cut(s) 121, 135, 173, 243, 311, 325
CviKI_1 RGCY 6 cut(s) 121, 135, 173, 243, 311, 325
DdeI CTNAG 2 cut(s) 226, 329
DriI GACNNNNNGTC 1 cut(s) 157
EaeI YGGCCR 1 cut(s) 323
EagI CGGCCG 1 cut(s) 323
Eam1104I CTCTTC 3 cut(s) 31, 128, 184
Eam1105I GACNNNNNGTC 1 cut(s) 157
EarI CTCTTC 3 cut(s) 31, 128, 184
EclXI CGGCCG 1 cut(s) 323
Eco52I CGGCCG 1 cut(s) 323
Eco57I CTGAAG 1 cut(s) 219
EcoNI CCTNNNNNAGG 1 cut(s) 167
EcoRII CCWGG 1 cut(s) 388
Esp3I CGTCTC 1 cut(s) 393
FaeI CATG 2 cut(s) 144, 371
FaiI YATR 7 cut(s) 142, 186, 209, 216, 299, 369, 418
FalI AAGNNNNNCTT 2 cut(s) 71, 103
FaqI GGGAC 1 cut(s) 145
FatI CATG 2 cut(s) 140, 367
Fnu4HI GCNGC 2 cut(s) 54, 326
FokI GGATG 1 cut(s) 314
Fsp4HI GCNGC 2 cut(s) 54, 326
FspBI CTAG 1 cut(s) 237
GluI GCNGC 2 cut(s) 54, 326
GsuI CTGGAG 1 cut(s) 247
HaeIII GGCC 1 cut(s) 325
Hin1II CATG 2 cut(s) 144, 371
HincII GTYRAC 1 cut(s) 21
HindII GTYRAC 1 cut(s) 21
HinfI GANTC 1 cut(s) 224
HpaI GTTAAC 1 cut(s) 21
HphI GGTGA 1 cut(s) 99
Hpy166II GTNNAC 2 cut(s) 21, 74
Hpy188I TCNGA 1 cut(s) 131
Hpy188III TCNNGA 3 cut(s) 237, 264, 347
Hpy8I GTNNAC 2 cut(s) 21, 74
Hpy99I CGWCG 1 cut(s) 131
HpyAV CCTTC 1 cut(s) 395
HpyCH4III ACNGT 1 cut(s) 404
HpyCH4IV ACGT 1 cut(s) 23
HpyCH4V TGCA 2 cut(s) 32, 287
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 284, 293, 390
HpyF3I CTNAG 2 cut(s) 226, 329
HpySE526I ACGT 1 cut(s) 23
Hsp92II CATG 2 cut(s) 144, 371
KspAI GTTAAC 1 cut(s) 21
LguI GCTCTTC 2 cut(s) 31, 128
LpnPI CCDG 7 cut(s) 63, 176, 213, 217, 277, 375, 402
Lsp1109I GCAGC 1 cut(s) 65
LweI GCATC 4 cut(s) 50, 74, 265, 283
MaeI CTAG 1 cut(s) 237
MaeII ACGT 1 cut(s) 23
MaeIII GTNAC 2 cut(s) 193, 202
MboII GAAGA 6 cut(s) 48, 87, 93, 115, 171, 281
MluCI AATT 1 cut(s) 256
MlyI GAGTC 1 cut(s) 218
MmeI TCCRAC 2 cut(s) 109, 129
MnlI CCTC 8 cut(s) 115, 125, 163, 184, 233, 324, 356, 390
MroXI GAANNNNTTC 1 cut(s) 354
MseI TTAA 3 cut(s) 20, 78, 255
MslI CAYNNNNRTG 1 cut(s) 200
MspA1I CMGCKG 1 cut(s) 328
MspCI CTTAAG 1 cut(s) 77
MspR9I CCNGG 1 cut(s) 390
MvaI CCWGG 1 cut(s) 390
MwoI GCNNNNNNNGC 4 cut(s) 38, 284, 293, 390
NlaIII CATG 2 cut(s) 144, 371
NmuCI GTSAC 2 cut(s) 193, 202
NspI RCATGY 1 cut(s) 371
OliI CACNNNNGTG 1 cut(s) 200
PciSI GCTCTTC 2 cut(s) 31, 128
PdmI GAANNNNTTC 1 cut(s) 354
PflMI CCANNNNNTGG 1 cut(s) 395
PkrI GCNGC 2 cut(s) 55, 327
PleI GAGTC 1 cut(s) 218
PpsI GAGTC 1 cut(s) 218
Psp1406I AACGTT 1 cut(s) 23
Psp6I CCWGG 1 cut(s) 388
PspGI CCWGG 1 cut(s) 388
RseI CAYNNNNRTG 1 cut(s) 200
SapI GCTCTTC 2 cut(s) 31, 128
SaqAI TTAA 3 cut(s) 20, 78, 255
SatI GCNGC 2 cut(s) 54, 326
SchI GAGTC 1 cut(s) 218
ScrFI CCNGG 1 cut(s) 390
SetI ASST 4 cut(s) 26, 123, 195, 236
SfaNI GCATC 4 cut(s) 50, 74, 265, 283
SfcI CTRYAG 1 cut(s) 207
SmiMI CAYNNNNRTG 1 cut(s) 200
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
Sse9I AATT 1 cut(s) 256
SsiI CCGC 1 cut(s) 326
SspMI CTAG 1 cut(s) 237
StyD4I CCNGG 1 cut(s) 388
TaaI ACNGT 1 cut(s) 404
TaiI ACGT 1 cut(s) 26
TasI AATT 1 cut(s) 256
TauI GCSGC 1 cut(s) 328
Tru1I TTAA 3 cut(s) 20, 78, 255
Tru9I TTAA 3 cut(s) 20, 78, 255
TscAI CASTG 1 cut(s) 202
TseFI GTSAC 2 cut(s) 193, 202
TseI GCWGC 1 cut(s) 53
Tsp45I GTSAC 2 cut(s) 193, 202
TspDTI ATGAA 1 cut(s) 87
TspRI CASTG 1 cut(s) 202
Van91I CCANNNNNTGG 1 cut(s) 395
Vha464I CTTAAG 1 cut(s) 77
XagI CCTNNNNNAGG 1 cut(s) 167
XbaI TCTAGA 1 cut(s) 236
XceI RCATGY 1 cut(s) 371
XmnI GAANNNNTTC 1 cut(s) 354
XspI CTAG 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.