Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006034.1

Orthogroup ID

OG0018996

Physical Location & Seq

Genomic Coordinates Forward (+)

12222 .. 12944

Gene Structure 723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006034.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

atgaactgctggtccttcgttggcaaagtgtacgccatcctcacccttcagttactcgccaccatcggcatcggcgccaccgtcagactggacccttcaatttcccacttcttgctcaaaacccacgccggcattgccgtctacgtcctcatcctcgtgacgccctttgtcgtgctgatcccaatgctttgtctcagacacctcaagccggttaactacttgttggttgcaattttcaccgtctctcttgcattccaagtcggaattacttgtgttttcactcctgggatggtgattttggagtctgtgtttttaaccgctgtggtttttgttactctcacactatacacattctgggctgcttggagaggctatgactttagcttactaggacctttcctgtctgaagccttgctttgtctggttatctatgctttcattcagatattttaccctctgggtaagaccaaggtgatgatatttggggccttgggatccattgttttctgcggctatatcgtatatgacacctacatgctgattgagcgccactcacaagacaatgactacattttagctgcagtcggcttgtacctggacatccttaatcttttcagcttccttattgatcttataagcggctgtgataatggctcctgcgattgctgcagtgccgaatgctgcgagtgcctaggagatattggtggggaatgtttagcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009826 GO:0009987 GO:0010033 GO:0010941 GO:0014070 GO:0016043 GO:0016049 GO:0022603 GO:0023052 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0043207 GO:0043401 GO:0048519 GO:0048523 GO:0048545 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060548 GO:0060560 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071840 GO:0098542 GO:1901700 GO:1901701 GO:1905421 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bax1-I

Protein Analysis

240

Amino Acids

26.39

Weight (kDa)

4.82

Isoelectric Point (pI)

34.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018996)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0491411
rosa_laevigata	RLG00000022843
rosa_multiflora	Rmu_sc0006034.1_g000003 Rmu_sc0013435.1_g000001
rosa_roxburghii	Rroxscaffold_6G00392920
rosa_rugosa	Rorug03G0249200
rosa_samantha	Rh3CG331500 Rh3DG333000
rosa_wichuraiana	Rw3G026350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	635
AccB1I	GGYRCC	1 cut(s)	74
AccI	GTMKAC	1 cut(s)	141
AciI	CCGC	3 cut(s)	318, 510, 639
AclWI	GGATC	3 cut(s)	172, 489, 502
AcuI	CTGAAG	2 cut(s)	32, 426
AcyI	GRCGYC	2 cut(s)	75, 161
AfaI	GTAC	2 cut(s)	32, 593
AfiI	CCNNNNNNNGG	1 cut(s)	208
AgsI	TTSAA	1 cut(s)	99
AjnI	CCWGG	2 cut(s)	283, 594
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	4 cut(s)	384, 578, 618, 719
AluI	AGCT	4 cut(s)	384, 578, 618, 719
Alw26I	GTCTC	2 cut(s)	197, 247
AlwI	GGATC	3 cut(s)	172, 489, 502
AoxI	GGCC	1 cut(s)	486
ApeKI	GCWGC	4 cut(s)	359, 578, 666, 681
AspA2I	CCTAGG	1 cut(s)	691
AspLEI	GCGC	2 cut(s)	77, 549
AspS9I	GGNCC	4 cut(s)	12, 91, 392, 486
AsuHPI	GGTGA	4 cut(s)	34, 229, 304, 484
AvaII	GGWCC	3 cut(s)	12, 91, 392
AvrII	CCTAGG	1 cut(s)	691
BamHI	GGATCC	1 cut(s)	494
BanI	GGYRCC	1 cut(s)	74
BauI	CACGAG	1 cut(s)	155
BbvI	GCAGC	4 cut(s)	346, 565, 653, 668
BccI	CCATC	3 cut(s)	44, 71, 283
BceAI	ACGGC	1 cut(s)	122
BciT130I	CCWGG	2 cut(s)	285, 596
BcoDI	GTCTC	2 cut(s)	197, 247
BfaI	CTAG	2 cut(s)	389, 692
BfmI	CTRYAG	2 cut(s)	579, 667
BfoI	RGCGCY	2 cut(s)	78, 550
BisI	GCNGC	6 cut(s)	360, 511, 579, 640, 667, 682
BlnI	CCTAGG	1 cut(s)	691
BlsI	GCNGC	6 cut(s)	361, 512, 580, 641, 668, 683
Bme1390I	CCNGG	2 cut(s)	285, 596
Bme18I	GGWCC	3 cut(s)	12, 91, 392
BmgT120I	GGNCC	4 cut(s)	12, 91, 392, 486
BmiI	GGNNCC	5 cut(s)	76, 93, 487, 496, 655
BmrFI	CCNGG	2 cut(s)	285, 596
BmsI	GCATC	1 cut(s)	78
BplI	GAGNNNNNCTC	2 cut(s)	536, 568
BpuEI	CTTGAG	1 cut(s)	188
BsaHI	GRCGYC	2 cut(s)	75, 161
BsaJI	CCNNGG	4 cut(s)	284, 468, 489, 691
BsaXI	ACNNNNNCTCC	2 cut(s)	293, 323
Bsc4I	CCNNNNNNNGG	1 cut(s)	208
Bse118I	RCCGGY	2 cut(s)	128, 208
Bse1I	ACTGG	1 cut(s)	93
Bse3DI	GCAATG	1 cut(s)	132
BseBI	CCWGG	2 cut(s)	285, 596
BseDI	CCNNGG	4 cut(s)	284, 468, 489, 691
BseGI	GGATG	4 cut(s)	36, 150, 294, 600
BseLI	CCNNNNNNNGG	1 cut(s)	208
BseMI	GCAATG	1 cut(s)	132
BseMII	CTCAG	1 cut(s)	208
BseNI	ACTGG	1 cut(s)	93
BseXI	GCAGC	4 cut(s)	346, 565, 653, 668
BshFI	GGCC	1 cut(s)	488
BshNI	GGYRCC	1 cut(s)	74
BsiSI	CCGG	2 cut(s)	129, 209
BslI	CCNNNNNNNGG	1 cut(s)	208
BsmAI	GTCTC	2 cut(s)	197, 247
BsmBI	CGTCTC	1 cut(s)	247
BsmI	GAATGC	2 cut(s)	251, 683
BsnI	GGCC	1 cut(s)	488
Bsp143I	GATC	3 cut(s)	177, 494, 628
BspACI	CCGC	3 cut(s)	318, 510, 639
BspANI	GGCC	1 cut(s)	488
BspCNI	CTCAG	1 cut(s)	207
BspLI	GGNNCC	5 cut(s)	76, 93, 487, 496, 655
BspMAI	CTGCAG	2 cut(s)	583, 671
BspPI	GGATC	3 cut(s)	172, 489, 502
BspT107I	GGYRCC	1 cut(s)	74
BsrDI	GCAATG	1 cut(s)	132
BsrFI	RCCGGY	2 cut(s)	128, 208
BsrI	ACTGG	1 cut(s)	93
BssAI	RCCGGY	2 cut(s)	128, 208
BssECI	CCNNGG	4 cut(s)	284, 468, 489, 691
BssMI	GATC	3 cut(s)	177, 494, 628
BssNI	GRCGYC	2 cut(s)	75, 161
BssSI	CACGAG	1 cut(s)	155
BssT1I	CCWWGG	3 cut(s)	468, 489, 691
Bst2BI	CACGAG	1 cut(s)	155
Bst2UI	CCWGG	2 cut(s)	285, 596
Bst4CI	ACNGT	2 cut(s)	82, 241
BstACI	GRCGYC	2 cut(s)	75, 161
BstC8I	GCNNGC	1 cut(s)	130
BstDEI	CTNAG	1 cut(s)	194
BstF5I	GGATG	4 cut(s)	36, 150, 294, 600
BstH2I	RGCGCY	2 cut(s)	78, 550
BstHHI	GCGC	2 cut(s)	77, 549
BstKTI	GATC	3 cut(s)	180, 497, 631
BstMAI	GTCTC	2 cut(s)	197, 247
BstMBI	GATC	3 cut(s)	177, 494, 628
BstMWI	GCNNNNNNNGC	4 cut(s)	134, 544, 666, 687
BstNI	CCWGG	2 cut(s)	285, 596
BstNSI	RCATGY	1 cut(s)	538
BstSCI	CCNGG	2 cut(s)	283, 594
BstSFI	CTRYAG	2 cut(s)	579, 667
BstV1I	GCAGC	4 cut(s)	346, 565, 653, 668
BstX2I	RGATCY	1 cut(s)	494
BstYI	RGATCY	1 cut(s)	494
BsuRI	GGCC	1 cut(s)	488
BtsCI	GGATG	4 cut(s)	36, 150, 294, 600
BtsI	GCAGTG	1 cut(s)	676
BtsIMutI	CAGTG	1 cut(s)	676
Cac8I	GCNNGC	1 cut(s)	130
CfoI	GCGC	2 cut(s)	77, 549
Cfr10I	RCCGGY	2 cut(s)	128, 208
Cfr13I	GGNCC	4 cut(s)	12, 91, 392, 486
CseI	GACGC	1 cut(s)	169
Csp6I	GTAC	2 cut(s)	31, 592
CviAII	CATG	1 cut(s)	535
CviQI	GTAC	2 cut(s)	31, 592
DdeI	CTNAG	1 cut(s)	194
DinI	GGCGCC	1 cut(s)	76
DpnI	GATC	3 cut(s)	179, 496, 630
DpnII	GATC	3 cut(s)	177, 494, 628
Eco130I	CCWWGG	3 cut(s)	468, 489, 691
Eco47I	GGWCC	3 cut(s)	12, 91, 392
Eco57I	CTGAAG	2 cut(s)	32, 426
EcoO109I	RGGNCCY	2 cut(s)	392, 486
EcoRII	CCWGG	2 cut(s)	283, 594
EcoT14I	CCWWGG	3 cut(s)	468, 489, 691
EgeI	GGCGCC	1 cut(s)	76
EheI	GGCGCC	1 cut(s)	76
ErhI	CCWWGG	3 cut(s)	468, 489, 691
Esp3I	CGTCTC	1 cut(s)	247
FaeI	CATG	1 cut(s)	538
FaiI	YATR	8 cut(s)	346, 375, 432, 516, 523, 525, 536, 635
FalI	AAGNNNNNCTT	2 cut(s)	399, 431
FatI	CATG	1 cut(s)	534
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	6 cut(s)	360, 511, 579, 640, 667, 682
FokI	GGATG	4 cut(s)	23, 137, 301, 587
Fsp4HI	GCNGC	6 cut(s)	360, 511, 579, 640, 667, 682
FspBI	CTAG	2 cut(s)	389, 692
GlaI	GCGC	2 cut(s)	76, 548
GluI	GCNGC	6 cut(s)	360, 511, 579, 640, 667, 682
HaeII	RGCGCY	2 cut(s)	78, 550
HaeIII	GGCC	1 cut(s)	488
HapII	CCGG	2 cut(s)	129, 209
HgaI	GACGC	1 cut(s)	169
HhaI	GCGC	2 cut(s)	77, 549
Hin1I	GRCGYC	2 cut(s)	75, 161
Hin1II	CATG	1 cut(s)	538
Hin6I	GCGC	2 cut(s)	75, 547
HinP1I	GCGC	2 cut(s)	75, 547
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HinfI	GANTC	1 cut(s)	302
HpaI	GTTAAC	1 cut(s)	214
HpaII	CCGG	2 cut(s)	129, 209
HphI	GGTGA	4 cut(s)	34, 229, 304, 484
Hpy166II	GTNNAC	3 cut(s)	31, 142, 214
Hpy188I	TCNGA	5 cut(s)	86, 197, 263, 406, 444
Hpy188III	TCNNGA	1 cut(s)	157
Hpy8I	GTNNAC	3 cut(s)	31, 142, 214
HpyAV	CCTTC	3 cut(s)	25, 56, 105
HpyCH4III	ACNGT	2 cut(s)	82, 241
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	4 cut(s)	230, 251, 581, 669
HpyF10VI	GCNNNNNNNGC	4 cut(s)	134, 544, 666, 687
HpyF3I	CTNAG	1 cut(s)	194
HpySE526I	ACGT	1 cut(s)	144
Hsp92I	GRCGYC	2 cut(s)	75, 161
Hsp92II	CATG	1 cut(s)	538
HspAI	GCGC	2 cut(s)	75, 547
KasI	GGCGCC	1 cut(s)	74
KroI	GCCGGC	1 cut(s)	128
KroNI	GCCGGC	1 cut(s)	130
KspAI	GTTAAC	1 cut(s)	214
Kzo9I	GATC	3 cut(s)	177, 494, 628
LmnI	GCTCC	1 cut(s)	659
Lsp1109I	GCAGC	4 cut(s)	346, 565, 653, 668
LweI	GCATC	1 cut(s)	78
MaeI	CTAG	2 cut(s)	389, 692
MaeII	ACGT	1 cut(s)	144
MaeIII	GTNAC	3 cut(s)	51, 157, 331
MalI	GATC	3 cut(s)	179, 496, 630
MboI	GATC	3 cut(s)	177, 494, 628
MflI	RGATCY	1 cut(s)	494
MluCI	AATT	3 cut(s)	99, 231, 264
Mly113I	GGCGCC	1 cut(s)	75
MlyI	GAGTC	1 cut(s)	311
MmeI	TCCRAC	1 cut(s)	241
MnlI	CCTC	6 cut(s)	50, 158, 164, 212, 362, 465
MroNI	GCCGGC	1 cut(s)	128
MseI	TTAA	4 cut(s)	213, 314, 606, 721
MslI	CAYNNNNRTG	2 cut(s)	155, 533
MspA1I	CMGCKG	1 cut(s)	320
MspI	CCGG	2 cut(s)	129, 209
MspR9I	CCNGG	2 cut(s)	285, 596
Mva1269I	GAATGC	2 cut(s)	251, 683
MvaI	CCWGG	2 cut(s)	285, 596
MwoI	GCNNNNNNNGC	4 cut(s)	134, 544, 666, 687
NaeI	GCCGGC	1 cut(s)	130
NarI	GGCGCC	1 cut(s)	75
NdeII	GATC	3 cut(s)	177, 494, 628
NgoMIV	GCCGGC	1 cut(s)	128
NlaIII	CATG	1 cut(s)	538
NlaIV	GGNNCC	5 cut(s)	76, 93, 487, 496, 655
NmuCI	GTSAC	1 cut(s)	157
NspI	RCATGY	1 cut(s)	538
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PctI	GAATGC	2 cut(s)	251, 683
PdiI	GCCGGC	1 cut(s)	130
PkrI	GCNGC	6 cut(s)	361, 512, 580, 641, 668, 683
PleI	GAGTC	1 cut(s)	310
PluTI	GGCGCC	1 cut(s)	78
PpsI	GAGTC	1 cut(s)	310
PpuMI	RGGWCCY	1 cut(s)	392
PsiI	TTATAA	1 cut(s)	635
Psp5II	RGGWCCY	1 cut(s)	392
Psp6I	CCWGG	2 cut(s)	283, 594
PspGI	CCWGG	2 cut(s)	283, 594
PspN4I	GGNNCC	5 cut(s)	76, 93, 487, 496, 655
PspPI	GGNCC	4 cut(s)	12, 91, 392, 486
PspPPI	RGGWCCY	1 cut(s)	392
PstI	CTGCAG	2 cut(s)	583, 671
PsuI	RGATCY	1 cut(s)	494
RsaI	GTAC	2 cut(s)	32, 593
RsaNI	GTAC	2 cut(s)	31, 592
RseI	CAYNNNNRTG	2 cut(s)	155, 533
SaqAI	TTAA	4 cut(s)	213, 314, 606, 721
SatI	GCNGC	6 cut(s)	360, 511, 579, 640, 667, 682
Sau3AI	GATC	3 cut(s)	177, 494, 628
Sau96I	GGNCC	4 cut(s)	12, 91, 392, 486
SchI	GAGTC	1 cut(s)	311
ScrFI	CCNGG	2 cut(s)	285, 596
SfaNI	GCATC	1 cut(s)	78
SfcI	CTRYAG	2 cut(s)	579, 667
SfoI	GGCGCC	1 cut(s)	76
SinI	GGWCC	3 cut(s)	12, 91, 392
SmiMI	CAYNNNNRTG	2 cut(s)	155, 533
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	3 cut(s)	99, 231, 264
SsiI	CCGC	3 cut(s)	318, 510, 639
SspDI	GGCGCC	1 cut(s)	74
SspMI	CTAG	2 cut(s)	389, 692
StyD4I	CCNGG	2 cut(s)	283, 594
StyI	CCWWGG	3 cut(s)	468, 489, 691
TaaI	ACNGT	2 cut(s)	82, 241
TaiI	ACGT	1 cut(s)	147
TasI	AATT	3 cut(s)	99, 231, 264
TauI	GCSGC	2 cut(s)	513, 642
Tru1I	TTAA	4 cut(s)	213, 314, 606, 721
Tru9I	TTAA	4 cut(s)	213, 314, 606, 721
TscAI	CASTG	1 cut(s)	676
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	4 cut(s)	359, 578, 666, 681
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	2 cut(s)	17, 427
TspRI	CASTG	1 cut(s)	676
VpaK11BI	GGWCC	3 cut(s)	12, 91, 392
XceI	RCATGY	1 cut(s)	538
XcmI	CCANNNNNNNNNTGG	1 cut(s)	85
XmaJI	CCTAGG	1 cut(s)	691
XmiI	GTMKAC	1 cut(s)	141
XspI	CTAG	2 cut(s)	389, 692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.