Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0018996

Physical Location & Seq

Genomic Coordinates Reverse (-)

12709682 .. 12710614

Gene Structure 933 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00392920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGATGAACTGCTGGTCCTTCGTTGGCAAAGTGTACGCCATCCTCACCCTTCAGTTACTCGCCACCATCGGCATCGGCGCCACCGTCAGACTGGTCCCTTCAATTTCCCACTTCTTGCTCAAAACCCACGCCGGCATTGCCGTCTACGTCCTCATCCTCGTGACGCCCTTTGTCGTGCTGATCCCAATGCTTTGTCTCAGACACCTCAAGCCGGTTAACTACTTGTTGGTTGCAATTTTCACCGTCTCTCTTGCATTCCAAGTCGGAATTACTTGTGTTTTCACTCCTGGGATGGTGATTTTGGAGTCCGTGTTTTTAACCGCTGTGGTTTTTGTTACTCTTAGGCTATACACATTCTGGGCTGCTTGGAGAGGCTATGACTTTAGCTTACTAGGACCCTTCCTGTCTGAAGCCTTGCTTTGTCTGGTTATCTATGCTTTCATTCAGATATTTTACCCTCTGGGTAAGACTAAGGTGATGATATTTGGGGCCTTGGGCTCCATTGTTTTCTGCGGCTATATCGTATATGACACCTACATGCTGATTGAGCGCCACTCACAAGACAATGACTACATTTTAGCTGCAGTCGTCTTGTACCTGGACATCCTTAATCTTTTCAGCTTCCTTATTGATCTTATAAGTGGCTGTGATAATAGCTCCTGCGATTGCTGCAGTGCCGAATGCTGCGAGTGCCTAGGAGATATTGGTGGGGAATGTTTAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009826 GO:0009987 GO:0010033 GO:0010941 GO:0014070 GO:0016043 GO:0016049 GO:0022603 GO:0023052 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0043207 GO:0043401 GO:0048519 GO:0048523 GO:0048545 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060548 GO:0060560 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071840 GO:0098542 GO:1901700 GO:1901701 GO:1905421 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bax1-I

Protein Analysis

241

Amino Acids

26.63

Weight (kDa)

5.18

Isoelectric Point (pI)

37.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bax1-I	PF01027	6 - 211	5e-35	Inhibitor of apoptosis-promoting Bax1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018996)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0491411
rosa_laevigata	RLG00000022843
rosa_multiflora	Rmu_sc0006034.1_g000003 Rmu_sc0013435.1_g000001
rosa_roxburghii	Rroxscaffold_6G00392920
rosa_rugosa	Rorug03G0249200
rosa_samantha	Rh3CG331500 Rh3DG333000
rosa_wichuraiana	Rw3G026350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	638
AccB1I	GGYRCC	1 cut(s)	77
AccI	GTMKAC	1 cut(s)	144
AciI	CCGC	2 cut(s)	321, 513
AclWI	GGATC	1 cut(s)	175
AcuI	CTGAAG	2 cut(s)	35, 429
AcyI	GRCGYC	2 cut(s)	78, 164
AfaI	GTAC	2 cut(s)	35, 596
AfiI	CCNNNNNNNGG	1 cut(s)	211
AgsI	TTSAA	1 cut(s)	102
AjnI	CCWGG	2 cut(s)	286, 597
AloI	GAACNNNNNNTCC	1 cut(s)	31
AluBI	AGCT	5 cut(s)	387, 581, 621, 657, 722
AluI	AGCT	5 cut(s)	387, 581, 621, 657, 722
Alw26I	GTCTC	2 cut(s)	200, 250
AlwI	GGATC	1 cut(s)	175
AoxI	GGCC	1 cut(s)	489
ApeKI	GCWGC	4 cut(s)	362, 581, 669, 684
AspA2I	CCTAGG	1 cut(s)	694
AspLEI	GCGC	2 cut(s)	80, 552
AspS9I	GGNCC	4 cut(s)	15, 94, 395, 489
AsuHPI	GGTGA	4 cut(s)	37, 232, 307, 487
AvaII	GGWCC	3 cut(s)	15, 94, 395
AvrII	CCTAGG	1 cut(s)	694
BanI	GGYRCC	1 cut(s)	77
BanII	GRGCYC	1 cut(s)	500
BauI	CACGAG	1 cut(s)	158
BbvI	GCAGC	4 cut(s)	349, 568, 656, 671
BccI	CCATC	3 cut(s)	47, 74, 286
BceAI	ACGGC	1 cut(s)	125
BciT130I	CCWGG	2 cut(s)	288, 599
BcoDI	GTCTC	2 cut(s)	200, 250
BfaI	CTAG	2 cut(s)	392, 695
BfmI	CTRYAG	2 cut(s)	582, 670
BfoI	RGCGCY	2 cut(s)	81, 553
BisI	GCNGC	5 cut(s)	363, 514, 582, 670, 685
BlnI	CCTAGG	1 cut(s)	694
BlsI	GCNGC	5 cut(s)	364, 515, 583, 671, 686
Bme1390I	CCNGG	2 cut(s)	288, 599
Bme18I	GGWCC	3 cut(s)	15, 94, 395
BmgT120I	GGNCC	4 cut(s)	15, 94, 395, 489
BmiI	GGNNCC	5 cut(s)	79, 96, 397, 490, 499
BmrFI	CCNGG	2 cut(s)	288, 599
BmsI	GCATC	1 cut(s)	81
BplI	GAGNNNNNCTC	2 cut(s)	539, 571
BpuEI	CTTGAG	1 cut(s)	191
BsaHI	GRCGYC	2 cut(s)	78, 164
BsaJI	CCNNGG	3 cut(s)	287, 492, 694
BsaXI	ACNNNNNCTCC	2 cut(s)	296, 326
Bsc4I	CCNNNNNNNGG	1 cut(s)	211
Bse118I	RCCGGY	2 cut(s)	131, 211
Bse1I	ACTGG	1 cut(s)	96
Bse3DI	GCAATG	1 cut(s)	135
BseBI	CCWGG	2 cut(s)	288, 599
BseDI	CCNNGG	3 cut(s)	287, 492, 694
BseGI	GGATG	4 cut(s)	39, 153, 297, 603
BseLI	CCNNNNNNNGG	1 cut(s)	211
BseMI	GCAATG	1 cut(s)	135
BseMII	CTCAG	1 cut(s)	211
BseNI	ACTGG	1 cut(s)	96
BseXI	GCAGC	4 cut(s)	349, 568, 656, 671
BshFI	GGCC	1 cut(s)	491
BshNI	GGYRCC	1 cut(s)	77
BsiSI	CCGG	2 cut(s)	132, 212
BslFI	GGGAC	1 cut(s)	80
BslI	CCNNNNNNNGG	1 cut(s)	211
BsmAI	GTCTC	2 cut(s)	200, 250
BsmBI	CGTCTC	1 cut(s)	250
BsmFI	GGGAC	1 cut(s)	80
BsmI	GAATGC	2 cut(s)	254, 686
BsnI	GGCC	1 cut(s)	491
Bsp1286I	GDGCHC	1 cut(s)	500
Bsp143I	GATC	2 cut(s)	180, 631
BspACI	CCGC	2 cut(s)	321, 513
BspANI	GGCC	1 cut(s)	491
BspCNI	CTCAG	1 cut(s)	210
BspLI	GGNNCC	5 cut(s)	79, 96, 397, 490, 499
BspMAI	CTGCAG	2 cut(s)	586, 674
BspPI	GGATC	1 cut(s)	175
BspT107I	GGYRCC	1 cut(s)	77
BsrDI	GCAATG	1 cut(s)	135
BsrFI	RCCGGY	2 cut(s)	131, 211
BsrI	ACTGG	1 cut(s)	96
BssAI	RCCGGY	2 cut(s)	131, 211
BssECI	CCNNGG	3 cut(s)	287, 492, 694
BssMI	GATC	2 cut(s)	180, 631
BssNI	GRCGYC	2 cut(s)	78, 164
BssSI	CACGAG	1 cut(s)	158
BssT1I	CCWWGG	2 cut(s)	492, 694
Bst2BI	CACGAG	1 cut(s)	158
Bst2UI	CCWGG	2 cut(s)	288, 599
Bst4CI	ACNGT	2 cut(s)	85, 244
BstACI	GRCGYC	2 cut(s)	78, 164
BstC8I	GCNNGC	1 cut(s)	133
BstDEI	CTNAG	3 cut(s)	197, 341, 471
BstF5I	GGATG	4 cut(s)	39, 153, 297, 603
BstH2I	RGCGCY	2 cut(s)	81, 553
BstHHI	GCGC	2 cut(s)	80, 552
BstKTI	GATC	2 cut(s)	183, 634
BstMAI	GTCTC	2 cut(s)	200, 250
BstMBI	GATC	2 cut(s)	180, 631
BstMWI	GCNNNNNNNGC	4 cut(s)	137, 547, 669, 690
BstNI	CCWGG	2 cut(s)	288, 599
BstNSI	RCATGY	1 cut(s)	541
BstSCI	CCNGG	2 cut(s)	286, 597
BstSFI	CTRYAG	2 cut(s)	582, 670
BstV1I	GCAGC	4 cut(s)	349, 568, 656, 671
BsuRI	GGCC	1 cut(s)	491
BtsCI	GGATG	4 cut(s)	39, 153, 297, 603
BtsI	GCAGTG	1 cut(s)	679
BtsIMutI	CAGTG	1 cut(s)	679
Cac8I	GCNNGC	1 cut(s)	133
CfoI	GCGC	2 cut(s)	80, 552
Cfr10I	RCCGGY	2 cut(s)	131, 211
Cfr13I	GGNCC	4 cut(s)	15, 94, 395, 489
CseI	GACGC	1 cut(s)	172
Csp6I	GTAC	2 cut(s)	34, 595
CviAII	CATG	1 cut(s)	538
CviQI	GTAC	2 cut(s)	34, 595
DdeI	CTNAG	3 cut(s)	197, 341, 471
DinI	GGCGCC	1 cut(s)	79
DpnI	GATC	2 cut(s)	182, 633
DpnII	GATC	2 cut(s)	180, 631
Eco130I	CCWWGG	2 cut(s)	492, 694
Eco24I	GRGCYC	1 cut(s)	500
Eco47I	GGWCC	3 cut(s)	15, 94, 395
Eco57I	CTGAAG	2 cut(s)	35, 429
EcoO109I	RGGNCCY	2 cut(s)	395, 489
EcoRII	CCWGG	2 cut(s)	286, 597
EcoT14I	CCWWGG	2 cut(s)	492, 694
EcoT38I	GRGCYC	1 cut(s)	500
EgeI	GGCGCC	1 cut(s)	79
EheI	GGCGCC	1 cut(s)	79
ErhI	CCWWGG	2 cut(s)	492, 694
Esp3I	CGTCTC	1 cut(s)	250
FaeI	CATG	1 cut(s)	541
FaiI	YATR	8 cut(s)	349, 378, 435, 519, 526, 528, 539, 638
FalI	AAGNNNNNCTT	2 cut(s)	402, 434
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	1 cut(s)	537
FblI	GTMKAC	1 cut(s)	144
Fnu4HI	GCNGC	5 cut(s)	363, 514, 582, 670, 685
FokI	GGATG	4 cut(s)	26, 140, 304, 590
FriOI	GRGCYC	1 cut(s)	500
Fsp4HI	GCNGC	5 cut(s)	363, 514, 582, 670, 685
FspBI	CTAG	2 cut(s)	392, 695
GlaI	GCGC	2 cut(s)	79, 551
GluI	GCNGC	5 cut(s)	363, 514, 582, 670, 685
HaeII	RGCGCY	2 cut(s)	81, 553
HaeIII	GGCC	1 cut(s)	491
HapII	CCGG	2 cut(s)	132, 212
HgaI	GACGC	1 cut(s)	172
HhaI	GCGC	2 cut(s)	80, 552
Hin1I	GRCGYC	2 cut(s)	78, 164
Hin1II	CATG	1 cut(s)	541
Hin6I	GCGC	2 cut(s)	78, 550
HinP1I	GCGC	2 cut(s)	78, 550
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HinfI	GANTC	1 cut(s)	305
HpaI	GTTAAC	1 cut(s)	217
HpaII	CCGG	2 cut(s)	132, 212
HphI	GGTGA	4 cut(s)	37, 232, 307, 487
Hpy166II	GTNNAC	3 cut(s)	34, 145, 217
Hpy188I	TCNGA	5 cut(s)	89, 200, 266, 409, 447
Hpy188III	TCNNGA	1 cut(s)	160
Hpy8I	GTNNAC	3 cut(s)	34, 145, 217
HpyAV	CCTTC	4 cut(s)	28, 59, 108, 409
HpyCH4III	ACNGT	2 cut(s)	85, 244
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	4 cut(s)	233, 254, 584, 672
HpyF10VI	GCNNNNNNNGC	4 cut(s)	137, 547, 669, 690
HpyF3I	CTNAG	3 cut(s)	197, 341, 471
HpySE526I	ACGT	1 cut(s)	147
Hsp92I	GRCGYC	2 cut(s)	78, 164
Hsp92II	CATG	1 cut(s)	541
HspAI	GCGC	2 cut(s)	78, 550
KasI	GGCGCC	1 cut(s)	77
KroI	GCCGGC	1 cut(s)	131
KroNI	GCCGGC	1 cut(s)	133
KspAI	GTTAAC	1 cut(s)	217
Kzo9I	GATC	2 cut(s)	180, 631
LmnI	GCTCC	2 cut(s)	503, 662
Lsp1109I	GCAGC	4 cut(s)	349, 568, 656, 671
LweI	GCATC	1 cut(s)	81
MaeI	CTAG	2 cut(s)	392, 695
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	3 cut(s)	54, 160, 334
MalI	GATC	2 cut(s)	182, 633
MboI	GATC	2 cut(s)	180, 631
MhlI	GDGCHC	1 cut(s)	500
MluCI	AATT	3 cut(s)	102, 234, 267
Mly113I	GGCGCC	1 cut(s)	78
MlyI	GAGTC	1 cut(s)	314
MmeI	TCCRAC	1 cut(s)	244
MnlI	CCTC	6 cut(s)	53, 161, 167, 215, 365, 468
MroNI	GCCGGC	1 cut(s)	131
MseI	TTAA	4 cut(s)	216, 317, 609, 724
MslI	CAYNNNNRTG	2 cut(s)	158, 536
MspA1I	CMGCKG	1 cut(s)	323
MspI	CCGG	2 cut(s)	132, 212
MspR9I	CCNGG	2 cut(s)	288, 599
Mva1269I	GAATGC	2 cut(s)	254, 686
MvaI	CCWGG	2 cut(s)	288, 599
MwoI	GCNNNNNNNGC	4 cut(s)	137, 547, 669, 690
NaeI	GCCGGC	1 cut(s)	133
NarI	GGCGCC	1 cut(s)	78
NdeII	GATC	2 cut(s)	180, 631
NgoMIV	GCCGGC	1 cut(s)	131
NlaIII	CATG	1 cut(s)	541
NlaIV	GGNNCC	5 cut(s)	79, 96, 397, 490, 499
NmuCI	GTSAC	1 cut(s)	160
NspI	RCATGY	1 cut(s)	541
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PctI	GAATGC	2 cut(s)	254, 686
PdiI	GCCGGC	1 cut(s)	133
PkrI	GCNGC	5 cut(s)	364, 515, 583, 671, 686
PleI	GAGTC	1 cut(s)	313
PluTI	GGCGCC	1 cut(s)	81
PpsI	GAGTC	1 cut(s)	313
PpuMI	RGGWCCY	1 cut(s)	395
PsiI	TTATAA	1 cut(s)	638
Psp5II	RGGWCCY	1 cut(s)	395
Psp6I	CCWGG	2 cut(s)	286, 597
PspGI	CCWGG	2 cut(s)	286, 597
PspN4I	GGNNCC	5 cut(s)	79, 96, 397, 490, 499
PspPI	GGNCC	4 cut(s)	15, 94, 395, 489
PspPPI	RGGWCCY	1 cut(s)	395
PstI	CTGCAG	2 cut(s)	586, 674
RsaI	GTAC	2 cut(s)	35, 596
RsaNI	GTAC	2 cut(s)	34, 595
RseI	CAYNNNNRTG	2 cut(s)	158, 536
SaqAI	TTAA	4 cut(s)	216, 317, 609, 724
SatI	GCNGC	5 cut(s)	363, 514, 582, 670, 685
Sau3AI	GATC	2 cut(s)	180, 631
Sau96I	GGNCC	4 cut(s)	15, 94, 395, 489
SchI	GAGTC	1 cut(s)	314
ScrFI	CCNGG	2 cut(s)	288, 599
SduI	GDGCHC	1 cut(s)	500
SfaNI	GCATC	1 cut(s)	81
SfcI	CTRYAG	2 cut(s)	582, 670
SfoI	GGCGCC	1 cut(s)	79
SinI	GGWCC	3 cut(s)	15, 94, 395
SmiMI	CAYNNNNRTG	2 cut(s)	158, 536
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	3 cut(s)	102, 234, 267
SsiI	CCGC	2 cut(s)	321, 513
SspDI	GGCGCC	1 cut(s)	77
SspMI	CTAG	2 cut(s)	392, 695
StyD4I	CCNGG	2 cut(s)	286, 597
StyI	CCWWGG	2 cut(s)	492, 694
TaaI	ACNGT	2 cut(s)	85, 244
TaiI	ACGT	1 cut(s)	150
TasI	AATT	3 cut(s)	102, 234, 267
TauI	GCSGC	1 cut(s)	516
Tru1I	TTAA	4 cut(s)	216, 317, 609, 724
Tru9I	TTAA	4 cut(s)	216, 317, 609, 724
TscAI	CASTG	1 cut(s)	679
TseFI	GTSAC	1 cut(s)	160
TseI	GCWGC	4 cut(s)	362, 581, 669, 684
Tsp45I	GTSAC	1 cut(s)	160
TspDTI	ATGAA	2 cut(s)	20, 430
TspGWI	ACGGA	1 cut(s)	298
TspRI	CASTG	1 cut(s)	679
VpaK11BI	GGWCC	3 cut(s)	15, 94, 395
XceI	RCATGY	1 cut(s)	541
XcmI	CCANNNNNNNNNTGG	1 cut(s)	88
XmaJI	CCTAGG	1 cut(s)	694
XmiI	GTMKAC	1 cut(s)	144
XspI	CTAG	2 cut(s)	392, 695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.