Rw3G026350

Belongs to the BI1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0018996
Physical Location & Seq
Forward (+)
36057174 .. 36057842
669 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G026350.1

Sequence Viewer

Length: 633 bp
ATGATGAACTGCTGGTCCTTCGTTGGCAAAGTGTACGCCATCCTCACCCTTCAGTTACTCGCCACCATCGGCATCGGCGCCACCGTCAGACTGGACCCTTCAATTTCCCACTTCTTGCTCAAAACCCACGCCGGCATTGCCGTCTACGTCCTCATCCTCGTGACGCCCTTTGTCCCGGTTAACTACTTGTTGGTTGCAATTTTCACCGTCTCTCTTGCATTCCAAGTCGGAATTACTTGTGTTTTCACTCCTGGGATGGTGATTTTGGAGTCTGTGTTTTTAACCGCTGTGGTTTTTGTTACTCTCACACTGTACACATTCTGGGCTGCTTGGAGAGGCTATGACTTTAGCTTACTAGGACCTTTCCTGTCTGAAGCCTTGCTTTGTCTGGTTATCTATGCTTTCATTCAGATATTTTACCCTCTGGGTAAGACCAAGGTGATGATATTTGGGGCCTTGGGATCCATTGTTTTCTGCGGCTATATCGTATATGACACCTACATGCTGATTGAGCGCCACTCACAAGACAATGACTACATTTTAGCTGCAGTCGGCTTGTACCTGGACATCCTTAATCTTTTCAGCTTCCTTATTGATTTTCTAAGCGGCTGTGATAATGGCTCCAGCGATTGA

Protein Analysis

210

Amino Acids

23.26

Weight (kDa)

4.89

Isoelectric Point (pI)

26.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bax1-I PF01027 6 - 200 9.4e-33 Inhibitor of apoptosis-promoting Bax1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018996)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0491411
rosa_laevigata RLG00000022843
rosa_multiflora Rmu_sc0006034.1_g000003 Rmu_sc0013435.1_g000001
rosa_roxburghii Rroxscaffold_6G00392920
rosa_rugosa Rorug03G0249200
rosa_samantha Rh3CG331500 Rh3DG333000
rosa_wichuraiana Rw3G026350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 77
AccI GTMKAC 1 cut(s) 144
AciI CCGC 3 cut(s) 285, 477, 606
AclWI GGATC 2 cut(s) 456, 469
AcuI CTGAAG 2 cut(s) 35, 393
AcyI GRCGYC 2 cut(s) 78, 164
AfaI GTAC 3 cut(s) 35, 314, 560
AgsI TTSAA 1 cut(s) 102
AjnI CCWGG 2 cut(s) 250, 561
AloI GAACNNNNNNTCC 1 cut(s) 31
AluBI AGCT 3 cut(s) 351, 545, 585
AluI AGCT 3 cut(s) 351, 545, 585
Alw26I GTCTC 1 cut(s) 214
AlwI GGATC 2 cut(s) 456, 469
AoxI GGCC 1 cut(s) 453
ApeKI GCWGC 2 cut(s) 326, 545
AspLEI GCGC 2 cut(s) 80, 516
AspS9I GGNCC 4 cut(s) 15, 94, 359, 453
AsuC2I CCSGG 1 cut(s) 176
AsuHPI GGTGA 4 cut(s) 37, 196, 271, 451
AvaII GGWCC 3 cut(s) 15, 94, 359
BamHI GGATCC 1 cut(s) 461
BanI GGYRCC 1 cut(s) 77
BauI CACGAG 1 cut(s) 158
BbvI GCAGC 2 cut(s) 313, 532
BccI CCATC 3 cut(s) 47, 74, 250
BceAI ACGGC 1 cut(s) 125
BciT130I CCWGG 2 cut(s) 252, 563
BcnI CCSGG 1 cut(s) 176
BcoDI GTCTC 1 cut(s) 214
BfaI CTAG 1 cut(s) 356
BfmI CTRYAG 1 cut(s) 546
BfoI RGCGCY 2 cut(s) 81, 517
BisI GCNGC 4 cut(s) 327, 478, 546, 607
BlsI GCNGC 4 cut(s) 328, 479, 547, 608
Bme1390I CCNGG 3 cut(s) 176, 252, 563
Bme18I GGWCC 3 cut(s) 15, 94, 359
BmgT120I GGNCC 4 cut(s) 15, 94, 359, 453
BmiI GGNNCC 5 cut(s) 79, 96, 454, 463, 622
BmrFI CCNGG 3 cut(s) 176, 252, 563
BmsI GCATC 1 cut(s) 81
BplI GAGNNNNNCTC 2 cut(s) 503, 535
BpmI CTGGAG 1 cut(s) 607
BpuMI CCSGG 1 cut(s) 176
BsaHI GRCGYC 2 cut(s) 78, 164
BsaJI CCNNGG 3 cut(s) 251, 435, 456
BsaXI ACNNNNNCTCC 2 cut(s) 260, 290
Bse118I RCCGGY 1 cut(s) 131
Bse1I ACTGG 1 cut(s) 96
Bse3DI GCAATG 1 cut(s) 135
BseBI CCWGG 2 cut(s) 252, 563
BseDI CCNNGG 3 cut(s) 251, 435, 456
BseGI GGATG 4 cut(s) 39, 153, 261, 567
BseMI GCAATG 1 cut(s) 135
BseNI ACTGG 1 cut(s) 96
BseXI GCAGC 2 cut(s) 313, 532
BshFI GGCC 1 cut(s) 455
BshNI GGYRCC 1 cut(s) 77
BsiSI CCGG 2 cut(s) 132, 176
BslFI GGGAC 1 cut(s) 158
BsmAI GTCTC 1 cut(s) 214
BsmBI CGTCTC 1 cut(s) 214
BsmFI GGGAC 1 cut(s) 158
BsmI GAATGC 1 cut(s) 218
BsnI GGCC 1 cut(s) 455
Bsp1407I TGTACA 1 cut(s) 312
Bsp143I GATC 1 cut(s) 461
BspACI CCGC 3 cut(s) 285, 477, 606
BspANI GGCC 1 cut(s) 455
BspLI GGNNCC 5 cut(s) 79, 96, 454, 463, 622
BspMAI CTGCAG 1 cut(s) 550
BspPI GGATC 2 cut(s) 456, 469
BspT107I GGYRCC 1 cut(s) 77
BsrDI GCAATG 1 cut(s) 135
BsrFI RCCGGY 1 cut(s) 131
BsrGI TGTACA 1 cut(s) 312
BsrI ACTGG 1 cut(s) 96
BssAI RCCGGY 1 cut(s) 131
BssECI CCNNGG 3 cut(s) 251, 435, 456
BssMI GATC 1 cut(s) 461
BssNI GRCGYC 2 cut(s) 78, 164
BssSI CACGAG 1 cut(s) 158
BssT1I CCWWGG 2 cut(s) 435, 456
Bst2BI CACGAG 1 cut(s) 158
Bst2UI CCWGG 2 cut(s) 252, 563
Bst4CI ACNGT 3 cut(s) 85, 208, 312
BstACI GRCGYC 2 cut(s) 78, 164
BstAUI TGTACA 1 cut(s) 312
BstC8I GCNNGC 1 cut(s) 133
BstDEI CTNAG 1 cut(s) 602
BstF5I GGATG 4 cut(s) 39, 153, 261, 567
BstH2I RGCGCY 2 cut(s) 81, 517
BstHHI GCGC 2 cut(s) 80, 516
BstKTI GATC 1 cut(s) 464
BstMAI GTCTC 1 cut(s) 214
BstMBI GATC 1 cut(s) 461
BstMWI GCNNNNNNNGC 2 cut(s) 137, 511
BstNI CCWGG 2 cut(s) 252, 563
BstNSI RCATGY 1 cut(s) 505
BstSCI CCNGG 3 cut(s) 174, 250, 561
BstSFI CTRYAG 1 cut(s) 546
BstV1I GCAGC 2 cut(s) 313, 532
BstX2I RGATCY 1 cut(s) 461
BstYI RGATCY 1 cut(s) 461
BsuRI GGCC 1 cut(s) 455
BtsCI GGATG 4 cut(s) 39, 153, 261, 567
BtsIMutI CAGTG 1 cut(s) 308
Cac8I GCNNGC 1 cut(s) 133
CfoI GCGC 2 cut(s) 80, 516
Cfr10I RCCGGY 1 cut(s) 131
Cfr13I GGNCC 4 cut(s) 15, 94, 359, 453
CseI GACGC 1 cut(s) 172
Csp6I GTAC 3 cut(s) 34, 313, 559
CviAII CATG 1 cut(s) 502
CviQI GTAC 3 cut(s) 34, 313, 559
DdeI CTNAG 1 cut(s) 602
DinI GGCGCC 1 cut(s) 79
DpnI GATC 1 cut(s) 463
DpnII GATC 1 cut(s) 461
Eco130I CCWWGG 2 cut(s) 435, 456
Eco47I GGWCC 3 cut(s) 15, 94, 359
Eco57I CTGAAG 2 cut(s) 35, 393
EcoO109I RGGNCCY 2 cut(s) 359, 453
EcoRII CCWGG 2 cut(s) 250, 561
EcoT14I CCWWGG 2 cut(s) 435, 456
EgeI GGCGCC 1 cut(s) 79
EheI GGCGCC 1 cut(s) 79
ErhI CCWWGG 2 cut(s) 435, 456
Esp3I CGTCTC 1 cut(s) 214
FaeI CATG 1 cut(s) 505
FaiI YATR 6 cut(s) 342, 399, 483, 490, 492, 503
FalI AAGNNNNNCTT 2 cut(s) 366, 398
FaqI GGGAC 1 cut(s) 158
FatI CATG 1 cut(s) 501
FblI GTMKAC 1 cut(s) 144
Fnu4HI GCNGC 4 cut(s) 327, 478, 546, 607
FokI GGATG 4 cut(s) 26, 140, 268, 554
Fsp4HI GCNGC 4 cut(s) 327, 478, 546, 607
FspBI CTAG 1 cut(s) 356
GlaI GCGC 2 cut(s) 79, 515
GluI GCNGC 4 cut(s) 327, 478, 546, 607
GsuI CTGGAG 1 cut(s) 607
HaeII RGCGCY 2 cut(s) 81, 517
HaeIII GGCC 1 cut(s) 455
HapII CCGG 2 cut(s) 132, 176
HgaI GACGC 1 cut(s) 172
HhaI GCGC 2 cut(s) 80, 516
Hin1I GRCGYC 2 cut(s) 78, 164
Hin1II CATG 1 cut(s) 505
Hin6I GCGC 2 cut(s) 78, 514
HinP1I GCGC 2 cut(s) 78, 514
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HinfI GANTC 1 cut(s) 269
HpaI GTTAAC 1 cut(s) 181
HpaII CCGG 2 cut(s) 132, 176
HphI GGTGA 4 cut(s) 37, 196, 271, 451
Hpy166II GTNNAC 4 cut(s) 34, 145, 181, 315
Hpy188I TCNGA 4 cut(s) 89, 230, 373, 411
Hpy188III TCNNGA 1 cut(s) 160
Hpy8I GTNNAC 4 cut(s) 34, 145, 181, 315
HpyAV CCTTC 3 cut(s) 28, 59, 108
HpyCH4III ACNGT 3 cut(s) 85, 208, 312
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 3 cut(s) 197, 218, 548
HpyF10VI GCNNNNNNNGC 2 cut(s) 137, 511
HpyF3I CTNAG 1 cut(s) 602
HpySE526I ACGT 1 cut(s) 147
Hsp92I GRCGYC 2 cut(s) 78, 164
Hsp92II CATG 1 cut(s) 505
HspAI GCGC 2 cut(s) 78, 514
KasI GGCGCC 1 cut(s) 77
KroI GCCGGC 1 cut(s) 131
KroNI GCCGGC 1 cut(s) 133
KspAI GTTAAC 1 cut(s) 181
Kzo9I GATC 1 cut(s) 461
LmnI GCTCC 1 cut(s) 626
Lsp1109I GCAGC 2 cut(s) 313, 532
LweI GCATC 1 cut(s) 81
MaeI CTAG 1 cut(s) 356
MaeII ACGT 1 cut(s) 147
MaeIII GTNAC 3 cut(s) 54, 160, 298
MalI GATC 1 cut(s) 463
MboI GATC 1 cut(s) 461
MflI RGATCY 1 cut(s) 461
MluCI AATT 3 cut(s) 102, 198, 231
Mly113I GGCGCC 1 cut(s) 78
MlyI GAGTC 1 cut(s) 278
MmeI TCCRAC 1 cut(s) 208
MnlI CCTC 5 cut(s) 53, 161, 167, 329, 432
MroNI GCCGGC 1 cut(s) 131
MseI TTAA 3 cut(s) 180, 281, 573
MslI CAYNNNNRTG 2 cut(s) 158, 500
MspA1I CMGCKG 1 cut(s) 287
MspI CCGG 2 cut(s) 132, 176
MspR9I CCNGG 3 cut(s) 176, 252, 563
Mva1269I GAATGC 1 cut(s) 218
MvaI CCWGG 2 cut(s) 252, 563
MwoI GCNNNNNNNGC 2 cut(s) 137, 511
NaeI GCCGGC 1 cut(s) 133
NarI GGCGCC 1 cut(s) 78
NciI CCSGG 1 cut(s) 176
NdeII GATC 1 cut(s) 461
NgoMIV GCCGGC 1 cut(s) 131
NlaIII CATG 1 cut(s) 505
NlaIV GGNNCC 5 cut(s) 79, 96, 454, 463, 622
NmuCI GTSAC 1 cut(s) 160
NspI RCATGY 1 cut(s) 505
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PctI GAATGC 1 cut(s) 218
PdiI GCCGGC 1 cut(s) 133
PkrI GCNGC 4 cut(s) 328, 479, 547, 608
PleI GAGTC 1 cut(s) 277
PluTI GGCGCC 1 cut(s) 81
PpsI GAGTC 1 cut(s) 277
PpuMI RGGWCCY 1 cut(s) 359
Psp5II RGGWCCY 1 cut(s) 359
Psp6I CCWGG 2 cut(s) 250, 561
PspGI CCWGG 2 cut(s) 250, 561
PspN4I GGNNCC 5 cut(s) 79, 96, 454, 463, 622
PspPI GGNCC 4 cut(s) 15, 94, 359, 453
PspPPI RGGWCCY 1 cut(s) 359
PstI CTGCAG 1 cut(s) 550
PsuI RGATCY 1 cut(s) 461
RsaI GTAC 3 cut(s) 35, 314, 560
RsaNI GTAC 3 cut(s) 34, 313, 559
RseI CAYNNNNRTG 2 cut(s) 158, 500
SaqAI TTAA 3 cut(s) 180, 281, 573
SatI GCNGC 4 cut(s) 327, 478, 546, 607
Sau3AI GATC 1 cut(s) 461
Sau96I GGNCC 4 cut(s) 15, 94, 359, 453
SchI GAGTC 1 cut(s) 278
ScrFI CCNGG 3 cut(s) 176, 252, 563
SetI ASST 8 cut(s) 150, 353, 364, 441, 500, 547, 564, 587
SfaNI GCATC 1 cut(s) 81
SfcI CTRYAG 1 cut(s) 546
SfoI GGCGCC 1 cut(s) 79
SinI GGWCC 3 cut(s) 15, 94, 359
SmiMI CAYNNNNRTG 2 cut(s) 158, 500
Sse9I AATT 3 cut(s) 102, 198, 231
SsiI CCGC 3 cut(s) 285, 477, 606
SspDI GGCGCC 1 cut(s) 77
SspMI CTAG 1 cut(s) 356
StyD4I CCNGG 3 cut(s) 174, 250, 561
StyI CCWWGG 2 cut(s) 435, 456
TaaI ACNGT 3 cut(s) 85, 208, 312
TaiI ACGT 1 cut(s) 150
TasI AATT 3 cut(s) 102, 198, 231
TatI WGTACW 1 cut(s) 312
TauI GCSGC 2 cut(s) 480, 609
Tru1I TTAA 3 cut(s) 180, 281, 573
Tru9I TTAA 3 cut(s) 180, 281, 573
TscAI CASTG 1 cut(s) 315
TseFI GTSAC 1 cut(s) 160
TseI GCWGC 2 cut(s) 326, 545
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 2 cut(s) 20, 394
TspRI CASTG 1 cut(s) 315
VpaK11BI GGWCC 3 cut(s) 15, 94, 359
XceI RCATGY 1 cut(s) 505
XcmI CCANNNNNNNNNTGG 1 cut(s) 88
XmiI GTMKAC 1 cut(s) 144
XspI CTAG 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.