Rmu_sc0006369.1_g000009

Prolycopene isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006369.1
OG0018506
Physical Location & Seq
Forward (+)
55243 .. 62021
6779 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 669 bp
atgcaaaaatatcagtgtctcatcactcaccctagtcctcgagggttggttgcagccacacagttggctgtgagtggtgccaaggttttggttttagagaagcatgtggttcctggtgggagctctggctattatgagagggatggttatacattcgatgtcgagtttcctgtcctgattggtctcggcgataagtttgttaccttcattttatttttaggaaagctgttaaaagaagacgaccttcctaaagaagaggaaagatttcagagagtttatgttaagtctccatcttttttttccattcacaagggtgtcaaatctgaggctctgccttcagatacagattgccaccactttgtgcttaaggacgattggacaaggttggacgagccatatggaagtttattcataagtattccaactgttctggattcatcgttggctccagaagggcaccatattcttcacatatttacgacctcatcctttgaagactgggaggatttcttggtcgttgtgcctgttgaggaacattgggcctctgccaattctgttgtggttgaaaaggtgcacgatactgttgttgtggtgcataaacctgttgctactaaggacgaaactgaggttgctgatttggacgaaattgcacagatggaacttggttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008150 GO:0008152 GO:0016491 GO:0044464 GO:0055114
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
Amino_oxidase

Protein Analysis

222

Amino Acids

24.85

Weight (kDa)

4.92

Isoelectric Point (pI)

39.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAD_binding_8 PF13450 15 - 63 1.5e-07 NAD(P)-binding Rossmann-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018506)

Species Orthologous Gene IDs
malus_domestica MD12G1045700.v1.1
rosa_multiflora Rmu_sc0002283.1_g000006 Rmu_sc0006369.1_g000009
rosa_roxburghii Rroxscaffold_6G00404720
rosa_rugosa Rorug02G0199400 Rorug04G0032700 Rorug05G0069800 Rorug06G0386200 Rorug07G0081500
rosa_samantha Rh2CG259800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 39
AccB1I GGYRCC 2 cut(s) 77, 456
AcuI CTGAAG 1 cut(s) 321
AdeI CACNNNGTG 1 cut(s) 361
AflII CTTAAG 1 cut(s) 365
AgsI TTSAA 2 cut(s) 494, 566
AjnI CCWGG 1 cut(s) 112
AleI CACNNNNGTG 1 cut(s) 312
AluBI AGCT 2 cut(s) 123, 226
AluI AGCT 2 cut(s) 123, 226
Alw21I GWGCWC 2 cut(s) 125, 576
Alw26I GTCTC 3 cut(s) 23, 188, 291
Alw44I GTGCAC 1 cut(s) 572
Ama87I CYCGRG 1 cut(s) 39
AoxI GGCC 1 cut(s) 540
ApaLI GTGCAC 1 cut(s) 572
ApeKI GCWGC 1 cut(s) 53
Asp700I GAANNNNTTC 1 cut(s) 264
AspS9I GGNCC 1 cut(s) 540
AsuHPI GGTGA 1 cut(s) 20
AvaI CYCGRG 1 cut(s) 39
BaeGI GKGCMC 2 cut(s) 459, 576
BaeI ACNNNNGTAYC 2 cut(s) 570, 603
BanI GGYRCC 2 cut(s) 77, 456
BanII GRGCYC 1 cut(s) 125
BbsI GAAGAC 2 cut(s) 243, 501
Bbv12I GWGCWC 2 cut(s) 125, 576
BbvI GCAGC 1 cut(s) 65
BccI CCATC 3 cut(s) 137, 298, 649
BciT130I CCWGG 1 cut(s) 114
BcoDI GTCTC 3 cut(s) 23, 188, 291
BfaI CTAG 1 cut(s) 33
BfrI CTTAAG 1 cut(s) 365
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
Bme1390I CCNGG 1 cut(s) 114
BmeT110I CYCGRG 1 cut(s) 39
BmgT120I GGNCC 1 cut(s) 540
BmiI GGNNCC 4 cut(s) 79, 111, 447, 458
BmrFI CCNGG 1 cut(s) 114
BmrI ACTGGG 1 cut(s) 508
BmuI ACTGGG 1 cut(s) 508
BpiI GAAGAC 2 cut(s) 243, 501
BpmI CTGGAG 1 cut(s) 432
BsaI GGTCTC 1 cut(s) 188
BsaJI CCNNGG 1 cut(s) 81
Bse1I ACTGG 1 cut(s) 503
BseBI CCWGG 1 cut(s) 114
BseDI CCNNGG 1 cut(s) 81
BseGI GGATG 2 cut(s) 148, 485
BseMII CTCAG 2 cut(s) 315, 615
BseNI ACTGG 1 cut(s) 503
BseSI GKGCMC 2 cut(s) 459, 576
BseXI GCAGC 1 cut(s) 65
BshFI GGCC 1 cut(s) 542
BshNI GGYRCC 2 cut(s) 77, 456
BsiHKAI GWGCWC 2 cut(s) 125, 576
BsiHKCI CYCGRG 1 cut(s) 39
BsmAI GTCTC 3 cut(s) 23, 188, 291
BsnI GGCC 1 cut(s) 542
Bso31I GGTCTC 1 cut(s) 188
BsoBI CYCGRG 1 cut(s) 39
Bsp1286I GDGCHC 3 cut(s) 125, 459, 576
BspANI GGCC 1 cut(s) 542
BspCNI CTCAG 2 cut(s) 316, 616
BspLI GGNNCC 4 cut(s) 79, 111, 447, 458
BspT107I GGYRCC 2 cut(s) 77, 456
BspTI CTTAAG 1 cut(s) 365
BspTNI GGTCTC 1 cut(s) 188
BsrI ACTGG 1 cut(s) 503
BssECI CCNNGG 1 cut(s) 81
BssT1I CCWWGG 1 cut(s) 81
Bst2UI CCWGG 1 cut(s) 114
Bst4CI ACNGT 3 cut(s) 63, 427, 583
Bst6I CTCTTC 1 cut(s) 249
BstAFI CTTAAG 1 cut(s) 365
BstDEI CTNAG 3 cut(s) 324, 612, 624
BstF5I GGATG 2 cut(s) 148, 485
BstMAI GTCTC 3 cut(s) 23, 188, 291
BstNI CCWGG 1 cut(s) 114
BstNSI RCATGY 1 cut(s) 107
BstSCI CCNGG 1 cut(s) 112
BstSLI GKGCMC 2 cut(s) 459, 576
BstV1I GCAGC 1 cut(s) 65
BstV2I GAAGAC 2 cut(s) 243, 501
BstXI CCANNNNNNTGG 2 cut(s) 64, 88
BsuRI GGCC 1 cut(s) 542
BtsCI GGATG 2 cut(s) 148, 485
BtsIMutI CAGTG 1 cut(s) 20
Cfr13I GGNCC 1 cut(s) 540
CviAII CATG 1 cut(s) 104
CviJI RGCY 9 cut(s) 56, 68, 123, 129, 226, 329, 394, 446, 542
CviKI_1 RGCY 9 cut(s) 56, 68, 123, 129, 226, 329, 394, 446, 542
DdeI CTNAG 3 cut(s) 324, 612, 624
DraIII CACNNNGTG 1 cut(s) 361
Eam1104I CTCTTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 249
Ecl136II GAGCTC 1 cut(s) 123
Eco130I CCWWGG 1 cut(s) 81
Eco24I GRGCYC 1 cut(s) 125
Eco31I GGTCTC 1 cut(s) 188
Eco53kI GAGCTC 1 cut(s) 123
Eco57I CTGAAG 1 cut(s) 321
Eco88I CYCGRG 1 cut(s) 39
EcoICRI GAGCTC 1 cut(s) 123
EcoRII CCWGG 1 cut(s) 112
EcoT14I CCWWGG 1 cut(s) 81
EcoT38I GRGCYC 1 cut(s) 125
ErhI CCWWGG 1 cut(s) 81
FaeI CATG 1 cut(s) 107
FalI AAGNNNNNCTT 2 cut(s) 228, 260
FatI CATG 1 cut(s) 103
FauNDI CATATG 1 cut(s) 397
Fnu4HI GCNGC 1 cut(s) 54
FokI GGATG 2 cut(s) 155, 472
FriOI GRGCYC 1 cut(s) 125
Fsp4HI GCNGC 1 cut(s) 54
FspBI CTAG 1 cut(s) 33
GluI GCNGC 1 cut(s) 54
GsuI CTGGAG 1 cut(s) 432
HaeIII GGCC 1 cut(s) 542
Hin1II CATG 1 cut(s) 107
HinfI GANTC 1 cut(s) 434
HphI GGTGA 1 cut(s) 20
Hpy166II GTNNAC 1 cut(s) 574
Hpy188I TCNGA 3 cut(s) 270, 325, 340
Hpy188III TCNNGA 3 cut(s) 175, 431, 449
Hpy8I GTNNAC 1 cut(s) 574
HpyAV CCTTC 4 cut(s) 214, 254, 345, 446
HpyCH4III ACNGT 3 cut(s) 63, 427, 583
HpyCH4V TGCA 5 cut(s) 4, 53, 574, 595, 650
HpyF3I CTNAG 3 cut(s) 324, 612, 624
Hsp92II CATG 1 cut(s) 107
LmnI GCTCC 2 cut(s) 120, 451
Lsp1109I GCAGC 1 cut(s) 65
MaeI CTAG 1 cut(s) 33
MaeIII GTNAC 1 cut(s) 199
MboII GAAGA 4 cut(s) 248, 266, 458, 506
MhlI GDGCHC 3 cut(s) 125, 459, 576
MluCI AATT 2 cut(s) 550, 645
MmeI TCCRAC 2 cut(s) 366, 446
MroXI GAANNNNTTC 1 cut(s) 264
MseI TTAA 3 cut(s) 230, 282, 366
MslI CAYNNNNRTG 1 cut(s) 312
MspCI CTTAAG 1 cut(s) 365
MspR9I CCNGG 1 cut(s) 114
MvaI CCWGG 1 cut(s) 114
NdeI CATATG 1 cut(s) 397
NlaIII CATG 1 cut(s) 107
NlaIV GGNNCC 4 cut(s) 79, 111, 447, 458
NmeAIII GCCGAG 1 cut(s) 165
NspI RCATGY 1 cut(s) 107
OliI CACNNNNGTG 1 cut(s) 312
PaeR7I CTCGAG 1 cut(s) 39
PdmI GAANNNNTTC 1 cut(s) 264
PfeI GAWTC 1 cut(s) 434
PkrI GCNGC 1 cut(s) 55
Psp124BI GAGCTC 1 cut(s) 125
Psp6I CCWGG 1 cut(s) 112
PspGI CCWGG 1 cut(s) 112
PspN4I GGNNCC 4 cut(s) 79, 111, 447, 458
PspPI GGNCC 1 cut(s) 540
PspXI VCTCGAGB 1 cut(s) 39
RseI CAYNNNNRTG 1 cut(s) 312
SacI GAGCTC 1 cut(s) 125
SaqAI TTAA 3 cut(s) 230, 282, 366
SatI GCNGC 1 cut(s) 54
Sau96I GGNCC 1 cut(s) 540
ScrFI CCNGG 1 cut(s) 114
SduI GDGCHC 3 cut(s) 125, 459, 576
Sfr274I CTCGAG 1 cut(s) 39
SlaI CTCGAG 1 cut(s) 39
SmiMI CAYNNNNRTG 1 cut(s) 312
SmlI CTYRAG 2 cut(s) 39, 365
SmoI CTYRAG 2 cut(s) 39, 365
Sse9I AATT 2 cut(s) 550, 645
SspMI CTAG 1 cut(s) 33
SstI GAGCTC 1 cut(s) 125
StyD4I CCNGG 1 cut(s) 112
StyI CCWWGG 1 cut(s) 81
TaaI ACNGT 3 cut(s) 63, 427, 583
TaqI TCGA 3 cut(s) 40, 156, 162
TasI AATT 2 cut(s) 550, 645
TfiI GAWTC 1 cut(s) 434
Tru1I TTAA 3 cut(s) 230, 282, 366
Tru9I TTAA 3 cut(s) 230, 282, 366
TscAI CASTG 1 cut(s) 20
TseI GCWGC 1 cut(s) 53
TspDTI ATGAA 3 cut(s) 196, 400, 426
TspRI CASTG 1 cut(s) 20
Vha464I CTTAAG 1 cut(s) 365
VneI GTGCAC 1 cut(s) 572
XceI RCATGY 1 cut(s) 107
XcmI CCANNNNNNNNNTGG 1 cut(s) 556
XhoI CTCGAG 1 cut(s) 39
XmnI GAANNNNTTC 1 cut(s) 264
XspI CTAG 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.