Rmu_sc0006483.1_g000004

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006483.1
OG0018727
Physical Location & Seq
Reverse (-)
37560 .. 40288
2729 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1107 bp
atggcaaaggagattaggaatctggatgcgtggatggaggtagttcctgcccctttcatttacccacgaaagacttcgaattctcctggtttagagacgattccagaggaaagtgttgaggaaggttctgaggtatttgattttctcttgtatctgttatgggcagtatggaaagagaggaataaaagagtttggaatagtaagtccctcgatttggatcagctcttcttccaagcagcttctggtttctccttgtttacttctctctgtctgggtaggaattccaaaactaaacgagcttcaactccttggttgcctcctcctgcagggtggcttaaggcaaatttagatggagcttttgacagcagtactaacatgggagggataggtgttgttgtggtacgtgactctgaaggcctgattgttggcgaaacttgttgcagaatctcgtcaattagtgctcctatcgtagtagaggctttggctgggagggctacatgtgcttgggctgtggagttcaaacaggcacccattatctttgaaagtgattgtctgaagttggttaattctttgaagtctgaagaggaagatcacctcaattattgggacggtggcctggtgtccatagcagagtggtccagtcgaagccagggctgcggggggacggcggtactgcccaggacggttggtggatctactgggtttgagtcggggatggtgtcgactgaaccgagatcaaagcgtggtaggcctgagggttggttggagttggtgctgcaagatcagaggttgcctggatgtgatgtcttcgtgacagcagcgctgggttcgacggttctcagattggatatgtgggatctgatttgctttaggcggtttgatctggggaggaccggcgcctctttccaatatactgggtggatcaagatcatgcggcgtcaagctggtggtggtggcggggttgccggtggccagaaagtttgggtggtgcaggtatggggttggtgtcgtacctccagtcgtctggtgcttgggcttggacatgtttgtttgtgggcttcggcttcggctctgggcctagattgttttattgctgtttatttttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1

Protein Analysis

368

Amino Acids

40.31

Weight (kDa)

6.24

Isoelectric Point (pI)

46.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 115 - 216 1e-08 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018727)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03210 AT5G03210
prunus_persica Prupe.6G236900_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0469561 RchiOBHm_Chr3g0469571
rosa_multiflora Rmu_sc0006483.1_g000004
rosa_rugosa Rorug03G0102600
rosa_samantha Rh3AG151900 Rh3DG199900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 982
AccB1I GGYRCC 2 cut(s) 526, 896
AccI GTMKAC 1 cut(s) 722
AciI CCGC 5 cut(s) 657, 668, 874, 934, 957
AclWI GGATC 4 cut(s) 225, 700, 864, 929
AcoI YGGCCR 1 cut(s) 970
AcsI RAATTY 3 cut(s) 79, 280, 343
AcuI CTGAAG 3 cut(s) 432, 575, 600
AcyI GRCGYC 2 cut(s) 897, 937
AfaI GTAC 4 cut(s) 370, 402, 672, 1012
AfeI AGCGCT 1 cut(s) 822
AfiI CCNNNNNNNGG 2 cut(s) 214, 326
AflII CTTAAG 1 cut(s) 335
AflIII ACRYGT 2 cut(s) 497, 1042
AgsI TTSAA 4 cut(s) 303, 520, 542, 574
AjnI CCWGG 5 cut(s) 85, 615, 648, 677, 793
AluBI AGCT 5 cut(s) 223, 239, 299, 356, 944
AluI AGCT 5 cut(s) 223, 239, 299, 356, 944
Alw21I GWGCWC 1 cut(s) 463
Alw26I GTCTC 1 cut(s) 89
AlwI GGATC 4 cut(s) 225, 700, 864, 929
AlwNI CAGNNNCTG 1 cut(s) 242
Aor51HI AGCGCT 1 cut(s) 822
AoxI GGCC 5 cut(s) 415, 613, 749, 970, 1075
ApeKI GCWGC 4 cut(s) 236, 654, 775, 818
ApoI RAATTY 3 cut(s) 79, 280, 343
Asp700I GAANNNNTTC 1 cut(s) 73
AspLEI GCGC 2 cut(s) 823, 899
AspS9I GGNCC 3 cut(s) 636, 891, 1075
AsuHPI GGTGA 1 cut(s) 584
AsuII TTCGAA 1 cut(s) 77
AvaII GGWCC 2 cut(s) 636, 891
AxyI CCTNAGG 1 cut(s) 753
BalI TGGCCA 1 cut(s) 972
BanI GGYRCC 2 cut(s) 526, 896
BbsI GAAGAC 1 cut(s) 799
Bbv12I GWGCWC 1 cut(s) 463
BbvI GCAGC 4 cut(s) 248, 641, 762, 830
BccI CCATC 3 cut(s) 28, 344, 709
BceAI ACGGC 1 cut(s) 681
BciT130I CCWGG 5 cut(s) 87, 617, 650, 679, 795
BcoDI GTCTC 1 cut(s) 89
BfaI CTAG 1 cut(s) 1079
BfmI CTRYAG 1 cut(s) 324
BfoI RGCGCY 2 cut(s) 824, 900
BfrI CTTAAG 1 cut(s) 335
BfuAI ACCTGC 1 cut(s) 982
BisI GCNGC 5 cut(s) 237, 655, 776, 819, 935
BlsI GCNGC 5 cut(s) 238, 656, 777, 820, 936
BmcAI AGTACT 1 cut(s) 370
Bme1390I CCNGG 5 cut(s) 87, 617, 650, 679, 795
Bme18I GGWCC 2 cut(s) 636, 891
BmgT120I GGNCC 3 cut(s) 636, 891, 1075
BmiI GGNNCC 2 cut(s) 528, 898
BmrFI CCNGG 5 cut(s) 87, 617, 650, 679, 795
BmrI ACTGGG 2 cut(s) 708, 924
BmsI GCATC 1 cut(s) 16
BmuI ACTGGG 2 cut(s) 708, 924
BpiI GAAGAC 1 cut(s) 799
BpmI CTGGAG 1 cut(s) 1000
Bpu14I TTCGAA 1 cut(s) 77
BsaAI YACGTR 1 cut(s) 404
BsaBI GATNNNNATC 2 cut(s) 216, 926
BsaHI GRCGYC 2 cut(s) 897, 937
BsaJI CCNNGG 3 cut(s) 308, 649, 677
Bsc4I CCNNNNNNNGG 2 cut(s) 214, 326
Bse118I RCCGGY 2 cut(s) 893, 965
Bse1I ACTGG 4 cut(s) 639, 703, 919, 1017
Bse21I CCTNAGG 1 cut(s) 753
Bse8I GATNNNNATC 2 cut(s) 216, 926
BseBI CCWGG 5 cut(s) 87, 617, 650, 679, 795
BseDI CCNNGG 3 cut(s) 308, 649, 677
BseGI GGATG 4 cut(s) 31, 39, 720, 803
BseJI GATNNNNATC 2 cut(s) 216, 926
BseLI CCNNNNNNNGG 2 cut(s) 214, 326
BseMII CTCAG 3 cut(s) 120, 744, 853
BseNI ACTGG 4 cut(s) 639, 703, 919, 1017
BseRI GAGGAG 1 cut(s) 309
BseXI GCAGC 4 cut(s) 248, 641, 762, 830
BseYI CCCAGC 2 cut(s) 485, 823
BsgI GTGCAG 1 cut(s) 1010
BshFI GGCC 5 cut(s) 417, 615, 751, 972, 1077
BshNI GGYRCC 2 cut(s) 526, 896
BsiHKAI GWGCWC 1 cut(s) 463
BsiSI CCGG 2 cut(s) 894, 966
BslFI GGGAC 3 cut(s) 190, 620, 676
BslI CCNNNNNNNGG 2 cut(s) 214, 326
BsmAI GTCTC 1 cut(s) 89
BsmBI CGTCTC 1 cut(s) 89
BsmFI GGGAC 3 cut(s) 190, 620, 676
BsnI GGCC 5 cut(s) 417, 615, 751, 972, 1077
Bsp119I TTCGAA 1 cut(s) 77
Bsp1286I GDGCHC 1 cut(s) 463
Bsp143I GATC 9 cut(s) 217, 589, 692, 734, 781, 856, 880, 921, 927
BspACI CCGC 5 cut(s) 657, 668, 874, 934, 957
BspANI GGCC 5 cut(s) 417, 615, 751, 972, 1077
BspCNI CTCAG 3 cut(s) 121, 745, 852
BspLI GGNNCC 2 cut(s) 528, 898
BspMAI CTGCAG 1 cut(s) 328
BspMI ACCTGC 1 cut(s) 982
BspPI GGATC 4 cut(s) 225, 700, 864, 929
BspQI GCTCTTC 1 cut(s) 230
BspT104I TTCGAA 1 cut(s) 77
BspT107I GGYRCC 2 cut(s) 526, 896
BspTI CTTAAG 1 cut(s) 335
BsrFI RCCGGY 2 cut(s) 893, 965
BsrI ACTGG 4 cut(s) 639, 703, 919, 1017
BssAI RCCGGY 2 cut(s) 893, 965
BssECI CCNNGG 3 cut(s) 308, 649, 677
BssMI GATC 9 cut(s) 217, 589, 692, 734, 781, 856, 880, 921, 927
BssNI GRCGYC 2 cut(s) 897, 937
BssT1I CCWWGG 1 cut(s) 308
Bst2UI CCWGG 5 cut(s) 87, 617, 650, 679, 795
Bst4CI ACNGT 3 cut(s) 611, 685, 835
Bst6I CTCTTC 2 cut(s) 230, 576
BstACI GRCGYC 2 cut(s) 897, 937
BstAFI CTTAAG 1 cut(s) 335
BstBAI YACGTR 1 cut(s) 404
BstBI TTCGAA 1 cut(s) 77
BstDEI CTNAG 3 cut(s) 129, 753, 839
BstENI CCTNNNNNAGG 1 cut(s) 324
BstF5I GGATG 4 cut(s) 31, 39, 720, 803
BstH2I RGCGCY 2 cut(s) 824, 900
BstHHI GCGC 2 cut(s) 823, 899
BstKTI GATC 9 cut(s) 220, 592, 695, 737, 784, 859, 883, 924, 930
BstMAI GTCTC 1 cut(s) 89
BstMBI GATC 9 cut(s) 217, 589, 692, 734, 781, 856, 880, 921, 927
BstMWI GCNNNNNNNGC 4 cut(s) 491, 500, 654, 748
BstNI CCWGG 5 cut(s) 87, 617, 650, 679, 795
BstNSI RCATGY 2 cut(s) 501, 1046
BstSCI CCNGG 5 cut(s) 85, 615, 648, 677, 793
BstSFI CTRYAG 1 cut(s) 324
BstV1I GCAGC 4 cut(s) 248, 641, 762, 830
BstV2I GAAGAC 1 cut(s) 799
BstX2I RGATCY 2 cut(s) 692, 856
BstXI CCANNNNNNTGG 2 cut(s) 914, 1024
BstYI RGATCY 2 cut(s) 692, 856
Bsu36I CCTNAGG 1 cut(s) 753
BsuRI GGCC 5 cut(s) 417, 615, 751, 972, 1077
BtsCI GGATG 4 cut(s) 31, 39, 720, 803
BveI ACCTGC 1 cut(s) 982
CaiI CAGNNNCTG 1 cut(s) 242
CfoI GCGC 2 cut(s) 823, 899
Cfr10I RCCGGY 2 cut(s) 893, 965
Cfr13I GGNCC 3 cut(s) 636, 891, 1075
CseI GACGC 1 cut(s) 926
Csp6I GTAC 4 cut(s) 369, 401, 671, 1011
CviAII CATG 4 cut(s) 376, 498, 931, 1043
CviQI GTAC 4 cut(s) 369, 401, 671, 1011
DdeI CTNAG 3 cut(s) 129, 753, 839
DinI GGCGCC 1 cut(s) 898
DpnI GATC 9 cut(s) 219, 591, 694, 736, 783, 858, 882, 923, 929
DpnII GATC 9 cut(s) 217, 589, 692, 734, 781, 856, 880, 921, 927
EaeI YGGCCR 1 cut(s) 970
Eam1104I CTCTTC 2 cut(s) 230, 576
EarI CTCTTC 2 cut(s) 230, 576
Eco130I CCWWGG 1 cut(s) 308
Eco147I AGGCCT 2 cut(s) 417, 751
Eco47I GGWCC 2 cut(s) 636, 891
Eco47III AGCGCT 1 cut(s) 822
Eco57I CTGAAG 3 cut(s) 432, 575, 600
Eco81I CCTNAGG 1 cut(s) 753
EcoNI CCTNNNNNAGG 1 cut(s) 324
EcoRI GAATTC 2 cut(s) 79, 280
EcoRII CCWGG 5 cut(s) 85, 615, 648, 677, 793
EcoT14I CCWWGG 1 cut(s) 308
EgeI GGCGCC 1 cut(s) 898
EheI GGCGCC 1 cut(s) 898
ErhI CCWWGG 1 cut(s) 308
Esp3I CGTCTC 1 cut(s) 89
FaeI CATG 4 cut(s) 379, 501, 934, 1046
FaqI GGGAC 3 cut(s) 190, 620, 676
FatI CATG 4 cut(s) 375, 497, 930, 1042
FauI CCCGC 2 cut(s) 650, 950
FblI GTMKAC 1 cut(s) 722
Fnu4HI GCNGC 5 cut(s) 237, 655, 776, 819, 935
FokI GGATG 4 cut(s) 38, 46, 727, 810
Fsp4HI GCNGC 5 cut(s) 237, 655, 776, 819, 935
FspBI CTAG 1 cut(s) 1079
GlaI GCGC 2 cut(s) 822, 898
GluI GCNGC 5 cut(s) 237, 655, 776, 819, 935
GsaI CCCAGC 2 cut(s) 489, 827
GsuI CTGGAG 1 cut(s) 1000
HaeII RGCGCY 2 cut(s) 824, 900
HaeIII GGCC 5 cut(s) 417, 615, 751, 972, 1077
HapII CCGG 2 cut(s) 894, 966
HgaI GACGC 1 cut(s) 926
HhaI GCGC 2 cut(s) 823, 899
Hin1I GRCGYC 2 cut(s) 897, 937
Hin1II CATG 4 cut(s) 379, 501, 934, 1046
Hin6I GCGC 2 cut(s) 821, 897
HinP1I GCGC 2 cut(s) 821, 897
HincII GTYRAC 1 cut(s) 723
HindII GTYRAC 1 cut(s) 723
HinfI GANTC 5 cut(s) 19, 100, 407, 444, 707
HpaII CCGG 2 cut(s) 894, 966
HphI GGTGA 1 cut(s) 584
Hpy166II GTNNAC 2 cut(s) 258, 723
Hpy188I TCNGA 7 cut(s) 130, 412, 555, 580, 786, 842, 861
Hpy188III TCNNGA 4 cut(s) 23, 104, 811, 925
Hpy8I GTNNAC 2 cut(s) 258, 723
Hpy99I CGWCG 1 cut(s) 835
HpyAV CCTTC 2 cut(s) 116, 407
HpyCH4III ACNGT 3 cut(s) 611, 685, 835
HpyCH4IV ACGT 1 cut(s) 403
HpyCH4V TGCA 4 cut(s) 326, 441, 778, 991
HpyF10VI GCNNNNNNNGC 4 cut(s) 491, 500, 654, 748
HpyF3I CTNAG 3 cut(s) 129, 753, 839
HpySE526I ACGT 1 cut(s) 403
Hsp92I GRCGYC 2 cut(s) 897, 937
Hsp92II CATG 4 cut(s) 379, 501, 934, 1046
HspAI GCGC 2 cut(s) 821, 897
KasI GGCGCC 1 cut(s) 896
Kzo9I GATC 9 cut(s) 217, 589, 692, 734, 781, 856, 880, 921, 927
LguI GCTCTTC 1 cut(s) 230
LmnI GCTCC 2 cut(s) 353, 466
Lsp1109I GCAGC 4 cut(s) 248, 641, 762, 830
LweI GCATC 1 cut(s) 16
MaeI CTAG 1 cut(s) 1079
MaeII ACGT 1 cut(s) 403
MaeIII GTNAC 2 cut(s) 404, 811
MalI GATC 9 cut(s) 219, 591, 694, 736, 783, 858, 882, 923, 929
MboI GATC 9 cut(s) 217, 589, 692, 734, 781, 856, 880, 921, 927
MboII GAAGA 5 cut(s) 217, 220, 593, 599, 799
MflI RGATCY 2 cut(s) 692, 856
MhlI GDGCHC 1 cut(s) 463
MlsI TGGCCA 1 cut(s) 972
MluCI AATT 6 cut(s) 79, 280, 343, 453, 565, 598
MluNI TGGCCA 1 cut(s) 972
Mly113I GGCGCC 1 cut(s) 897
MlyI GAGTC 2 cut(s) 401, 716
MmeI TCCRAC 1 cut(s) 744
Mox20I TGGCCA 1 cut(s) 972
MroXI GAANNNNTTC 1 cut(s) 73
MscI TGGCCA 1 cut(s) 972
MseI TTAA 3 cut(s) 336, 564, 1105
Msp20I TGGCCA 1 cut(s) 972
MspCI CTTAAG 1 cut(s) 335
MspI CCGG 2 cut(s) 894, 966
MspR9I CCNGG 5 cut(s) 87, 617, 650, 679, 795
MvaI CCWGG 5 cut(s) 87, 617, 650, 679, 795
MwoI GCNNNNNNNGC 4 cut(s) 491, 500, 654, 748
NarI GGCGCC 1 cut(s) 897
NdeII GATC 9 cut(s) 217, 589, 692, 734, 781, 856, 880, 921, 927
NlaIII CATG 4 cut(s) 379, 501, 934, 1046
NlaIV GGNNCC 2 cut(s) 528, 898
NmuCI GTSAC 2 cut(s) 404, 811
NspI RCATGY 2 cut(s) 501, 1046
NspV TTCGAA 1 cut(s) 77
PceI AGGCCT 2 cut(s) 417, 751
PciI ACATGT 2 cut(s) 497, 1042
PciSI GCTCTTC 1 cut(s) 230
PcsI WCGNNNNNNNCGW 1 cut(s) 728
PdmI GAANNNNTTC 1 cut(s) 73
PfeI GAWTC 3 cut(s) 19, 100, 444
PkrI GCNGC 5 cut(s) 238, 656, 777, 820, 936
PleI GAGTC 2 cut(s) 401, 715
PluTI GGCGCC 1 cut(s) 900
PpsI GAGTC 2 cut(s) 401, 715
Ppu21I YACGTR 1 cut(s) 404
PscI ACATGT 2 cut(s) 497, 1042
Psp6I CCWGG 5 cut(s) 85, 615, 648, 677, 793
PspFI CCCAGC 2 cut(s) 485, 823
PspGI CCWGG 5 cut(s) 85, 615, 648, 677, 793
PspN4I GGNNCC 2 cut(s) 528, 898
PspPI GGNCC 3 cut(s) 636, 891, 1075
PstI CTGCAG 1 cut(s) 328
PstNI CAGNNNCTG 1 cut(s) 242
PsuI RGATCY 2 cut(s) 692, 856
RsaI GTAC 4 cut(s) 370, 402, 672, 1012
RsaNI GTAC 4 cut(s) 369, 401, 671, 1011
SalI GTCGAC 1 cut(s) 721
SapI GCTCTTC 1 cut(s) 230
SaqAI TTAA 3 cut(s) 336, 564, 1105
SatI GCNGC 5 cut(s) 237, 655, 776, 819, 935
Sau3AI GATC 9 cut(s) 217, 589, 692, 734, 781, 856, 880, 921, 927
Sau96I GGNCC 3 cut(s) 636, 891, 1075
SbfI CCTGCAGG 1 cut(s) 328
ScaI AGTACT 1 cut(s) 370
SchI GAGTC 2 cut(s) 401, 716
ScrFI CCNGG 5 cut(s) 87, 617, 650, 679, 795
SdaI CCTGCAGG 1 cut(s) 328
SduI GDGCHC 1 cut(s) 463
SfaNI GCATC 1 cut(s) 16
SfcI CTRYAG 1 cut(s) 324
SfoI GGCGCC 1 cut(s) 898
SfuI TTCGAA 1 cut(s) 77
SinI GGWCC 2 cut(s) 636, 891
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
Sse8387I CCTGCAGG 1 cut(s) 328
Sse9I AATT 6 cut(s) 79, 280, 343, 453, 565, 598
SseBI AGGCCT 2 cut(s) 417, 751
SsiI CCGC 5 cut(s) 657, 668, 874, 934, 957
SspDI GGCGCC 1 cut(s) 896
SspMI CTAG 1 cut(s) 1079
StuI AGGCCT 2 cut(s) 417, 751
StyD4I CCNGG 5 cut(s) 85, 615, 648, 677, 793
StyI CCWWGG 1 cut(s) 308
TaaI ACNGT 3 cut(s) 611, 685, 835
TaiI ACGT 1 cut(s) 406
TaqI TCGA 5 cut(s) 77, 210, 643, 722, 830
TasI AATT 6 cut(s) 79, 280, 343, 453, 565, 598
TatI WGTACW 1 cut(s) 368
TauI GCSGC 1 cut(s) 937
TfiI GAWTC 3 cut(s) 19, 100, 444
Tru1I TTAA 3 cut(s) 336, 564, 1105
Tru9I TTAA 3 cut(s) 336, 564, 1105
TseFI GTSAC 2 cut(s) 404, 811
TseI GCWGC 4 cut(s) 236, 654, 775, 818
Tsp45I GTSAC 2 cut(s) 404, 811
TspDTI ATGAA 1 cut(s) 46
Vha464I CTTAAG 1 cut(s) 335
VpaK11BI GGWCC 2 cut(s) 636, 891
XagI CCTNNNNNAGG 1 cut(s) 324
XapI RAATTY 3 cut(s) 79, 280, 343
XceI RCATGY 2 cut(s) 501, 1046
XcmI CCANNNNNNNNNTGG 1 cut(s) 239
XmiI GTMKAC 1 cut(s) 722
XmnI GAANNNNTTC 1 cut(s) 73
XspI CTAG 1 cut(s) 1079
ZrmI AGTACT 1 cut(s) 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.