Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006483.1

Orthogroup ID

OG0012903

Physical Location & Seq

Genomic Coordinates Forward (+)

115621 .. 116269

Gene Structure 649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

atggatttccgcaggggacttacagatcccgaaccaacgaggcctgctggcagcgaagatcgaactcgggtgggagttccagcacgaggccgcccatgccaactgagccaaacctcggcctctctgactttcgaagaagaatcgaagatgatcgaggtggtgctgaacgatcgtctggggaagaaggtgaaggtgaagtgcaacgaggacgacaccatcggcgacctgaagaagctggtggctgctcagacgggtacccgagccgataagatccggatccagaagtggtacaacgtctacaaggaccacatcactctcagggattacgaagtccatgacggcatgggcctcgagctctactacaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006464 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0019538 GO:0031386 GO:0034641 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04212 map04212

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

122

Amino Acids

13.95

Weight (kDa)

7.75

Isoelectric Point (pI)

37.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	60 - 119	5e-06	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42300
fragaria_vesca	FvH4_6g15950
prunus_persica	Prupe.6G102700_v2.0.a1 Prupe.6G102700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0469651
rosa_multiflora	Rmu_co8219234.1_g000001 Rmu_sc0006483.1_g000021 Rmu_sc0018944.1_g000005
rosa_roxburghii	Rroxscaffold_6G00411600
rosa_rugosa	Rorug03G0102900 Rorug03G0103000 Rorug05G0318000
rosa_samantha	Rh3AG152600 Rh3BG176400 Rh3CG167400 Rh3DG199200 Rh5DG411000
rosa_wichuraiana	Rw3G014390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	254
AccB1I	GGYRCC	1 cut(s)	254
AccI	GTMKAC	1 cut(s)	297
AccIII	TCCGGA	1 cut(s)	273
AciI	CCGC	2 cut(s)	10, 91
AclWI	GGATC	4 cut(s)	20, 265, 271, 284
AcuI	CTGAAG	1 cut(s)	248
AfaI	GTAC	2 cut(s)	256, 290
AfiI	CCNNNNNNNGG	2 cut(s)	86, 115
AluBI	AGCT	2 cut(s)	235, 355
AluI	AGCT	2 cut(s)	235, 355
Alw21I	GWGCWC	1 cut(s)	357
AlwI	GGATC	4 cut(s)	20, 265, 271, 284
Ama87I	CYCGRG	3 cut(s)	66, 258, 350
Aor13HI	TCCGGA	1 cut(s)	273
AoxI	GGCC	4 cut(s)	41, 88, 117, 346
ApeKI	GCWGC	2 cut(s)	51, 242
Asp718I	GGTACC	1 cut(s)	254
AspS9I	GGNCC	2 cut(s)	304, 346
AsuHPI	GGTGA	2 cut(s)	199, 205
AsuII	TTCGAA	1 cut(s)	132
AvaI	CYCGRG	3 cut(s)	66, 258, 350
AvaII	GGWCC	1 cut(s)	304
BamHI	GGATCC	1 cut(s)	276
BanI	GGYRCC	1 cut(s)	254
BanII	GRGCYC	1 cut(s)	357
BauI	CACGAG	1 cut(s)	84
Bbv12I	GWGCWC	1 cut(s)	357
BbvI	GCAGC	2 cut(s)	63, 229
BccI	CCATC	1 cut(s)	224
BceAI	ACGGC	1 cut(s)	355
BcgI	CGANNNNNNTGC	2 cut(s)	331, 365
BisI	GCNGC	3 cut(s)	52, 91, 243
BlsI	GCNGC	3 cut(s)	53, 92, 244
Bme18I	GGWCC	1 cut(s)	304
BmeT110I	CYCGRG	3 cut(s)	66, 258, 350
BmgT120I	GGNCC	2 cut(s)	304, 346
BmiI	GGNNCC	2 cut(s)	256, 278
Bpu14I	TTCGAA	1 cut(s)	132
BsaBI	GATNNNNATC	1 cut(s)	275
BsaJI	CCNNGG	1 cut(s)	114
BsaWI	WCCGGW	1 cut(s)	273
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 115
Bse8I	GATNNNNATC	1 cut(s)	275
BseAI	TCCGGA	1 cut(s)	273
BseDI	CCNNGG	1 cut(s)	114
BseJI	GATNNNNATC	1 cut(s)	275
BseLI	CCNNNNNNNGG	2 cut(s)	86, 115
BseMII	CTCAG	3 cut(s)	95, 260, 331
BseXI	GCAGC	2 cut(s)	63, 229
Bsh1285I	CGRYCG	1 cut(s)	172
BshFI	GGCC	4 cut(s)	43, 90, 119, 348
BshNI	GGYRCC	1 cut(s)	254
BsiEI	CGRYCG	1 cut(s)	172
BsiHKAI	GWGCWC	1 cut(s)	357
BsiHKCI	CYCGRG	3 cut(s)	66, 258, 350
BsiSI	CCGG	1 cut(s)	274
BslFI	GGGAC	1 cut(s)	30
BslI	CCNNNNNNNGG	2 cut(s)	86, 115
BsmFI	GGGAC	1 cut(s)	30
BsnI	GGCC	4 cut(s)	43, 90, 119, 348
BsoBI	CYCGRG	3 cut(s)	66, 258, 350
Bsp119I	TTCGAA	1 cut(s)	132
Bsp1286I	GDGCHC	1 cut(s)	357
Bsp13I	TCCGGA	1 cut(s)	273
Bsp143I	GATC	6 cut(s)	25, 58, 150, 169, 270, 276
BspACI	CCGC	2 cut(s)	10, 91
BspANI	GGCC	4 cut(s)	43, 90, 119, 348
BspCNI	CTCAG	3 cut(s)	96, 259, 330
BspEI	TCCGGA	1 cut(s)	273
BspLI	GGNNCC	2 cut(s)	256, 278
BspPI	GGATC	4 cut(s)	20, 265, 271, 284
BspT104I	TTCGAA	1 cut(s)	132
BspT107I	GGYRCC	1 cut(s)	254
BssECI	CCNNGG	1 cut(s)	114
BssMI	GATC	6 cut(s)	25, 58, 150, 169, 270, 276
BssSI	CACGAG	1 cut(s)	84
Bst2BI	CACGAG	1 cut(s)	84
BstBI	TTCGAA	1 cut(s)	132
BstC8I	GCNNGC	2 cut(s)	45, 49
BstDEI	CTNAG	3 cut(s)	104, 246, 317
BstKTI	GATC	6 cut(s)	28, 61, 153, 172, 273, 279
BstMBI	GATC	6 cut(s)	25, 58, 150, 169, 270, 276
BstMCI	CGRYCG	1 cut(s)	172
BstMWI	GCNNNNNNNGC	2 cut(s)	96, 105
BstV1I	GCAGC	2 cut(s)	63, 229
BstX2I	RGATCY	3 cut(s)	25, 270, 276
BstYI	RGATCY	3 cut(s)	25, 270, 276
BsuRI	GGCC	4 cut(s)	43, 90, 119, 348
Cac8I	GCNNGC	2 cut(s)	45, 49
Cfr13I	GGNCC	2 cut(s)	304, 346
Csp6I	GTAC	2 cut(s)	255, 289
CviAII	CATG	3 cut(s)	96, 335, 343
CviJI	RGCY	9 cut(s)	43, 90, 108, 119, 235, 242, 263, 348, 355
CviKI_1	RGCY	9 cut(s)	43, 90, 108, 119, 235, 242, 263, 348, 355
CviQI	GTAC	2 cut(s)	255, 289
DdeI	CTNAG	3 cut(s)	104, 246, 317
DpnI	GATC	6 cut(s)	27, 60, 152, 171, 272, 278
DpnII	GATC	6 cut(s)	25, 58, 150, 169, 270, 276
Ecl136II	GAGCTC	1 cut(s)	355
Eco147I	AGGCCT	1 cut(s)	43
Eco24I	GRGCYC	1 cut(s)	357
Eco47I	GGWCC	1 cut(s)	304
Eco53kI	GAGCTC	1 cut(s)	355
Eco57I	CTGAAG	1 cut(s)	248
Eco88I	CYCGRG	3 cut(s)	66, 258, 350
EcoICRI	GAGCTC	1 cut(s)	355
EcoT38I	GRGCYC	1 cut(s)	357
FaeI	CATG	3 cut(s)	99, 338, 346
FaiI	YATR	3 cut(s)	97, 336, 344
FaqI	GGGAC	1 cut(s)	30
FatI	CATG	3 cut(s)	95, 334, 342
FblI	GTMKAC	1 cut(s)	297
Fnu4HI	GCNGC	3 cut(s)	52, 91, 243
FriOI	GRGCYC	1 cut(s)	357
Fsp4HI	GCNGC	3 cut(s)	52, 91, 243
GluI	GCNGC	3 cut(s)	52, 91, 243
HaeIII	GGCC	4 cut(s)	43, 90, 119, 348
HapII	CCGG	1 cut(s)	274
Hin1II	CATG	3 cut(s)	99, 338, 346
HinfI	GANTC	1 cut(s)	140
HpaII	CCGG	1 cut(s)	274
HphI	GGTGA	2 cut(s)	199, 205
Hpy166II	GTNNAC	1 cut(s)	298
Hpy188I	TCNGA	2 cut(s)	126, 249
Hpy188III	TCNNGA	3 cut(s)	29, 274, 280
Hpy8I	GTNNAC	1 cut(s)	298
HpyAV	CCTTC	2 cut(s)	178, 184
HpyCH4IV	ACGT	1 cut(s)	294
HpyCH4V	TGCA	1 cut(s)	201
HpyF10VI	GCNNNNNNNGC	2 cut(s)	96, 105
HpyF3I	CTNAG	3 cut(s)	104, 246, 317
HpySE526I	ACGT	1 cut(s)	294
Hsp92II	CATG	3 cut(s)	99, 338, 346
Kpn2I	TCCGGA	1 cut(s)	273
KpnI	GGTACC	1 cut(s)	258
Kzo9I	GATC	6 cut(s)	25, 58, 150, 169, 270, 276
LpnPI	CCDG	9 cut(s)	33, 57, 93, 161, 221, 239, 287, 293, 304
Lsp1109I	GCAGC	2 cut(s)	63, 229
MaeII	ACGT	1 cut(s)	294
MalI	GATC	6 cut(s)	27, 60, 152, 171, 272, 278
MboI	GATC	6 cut(s)	25, 58, 150, 169, 270, 276
MboII	GAAGA	6 cut(s)	68, 146, 149, 157, 193, 241
MflI	RGATCY	3 cut(s)	25, 270, 276
MhlI	GDGCHC	1 cut(s)	357
MnlI	CCTC	7 cut(s)	33, 80, 124, 130, 148, 199, 359
MroI	TCCGGA	1 cut(s)	273
MspI	CCGG	1 cut(s)	274
MwoI	GCNNNNNNNGC	2 cut(s)	96, 105
NdeII	GATC	6 cut(s)	25, 58, 150, 169, 270, 276
NlaIII	CATG	3 cut(s)	99, 338, 346
NlaIV	GGNNCC	2 cut(s)	256, 278
NmeAIII	GCCGAG	1 cut(s)	95
NspV	TTCGAA	1 cut(s)	132
PaeR7I	CTCGAG	1 cut(s)	350
PceI	AGGCCT	1 cut(s)	43
PfeI	GAWTC	1 cut(s)	140
PkrI	GCNGC	3 cut(s)	53, 92, 244
Ple19I	CGATCG	1 cut(s)	172
Psp124BI	GAGCTC	1 cut(s)	357
PspN4I	GGNNCC	2 cut(s)	256, 278
PspPI	GGNCC	2 cut(s)	304, 346
PspXI	VCTCGAGB	1 cut(s)	350
PsuI	RGATCY	3 cut(s)	25, 270, 276
PvuI	CGATCG	1 cut(s)	172
RsaI	GTAC	2 cut(s)	256, 290
RsaNI	GTAC	2 cut(s)	255, 289
SacI	GAGCTC	1 cut(s)	357
SatI	GCNGC	3 cut(s)	52, 91, 243
Sau3AI	GATC	6 cut(s)	25, 58, 150, 169, 270, 276
Sau96I	GGNCC	2 cut(s)	304, 346
SduI	GDGCHC	1 cut(s)	357
SetI	ASST	8 cut(s)	116, 159, 189, 195, 228, 237, 297, 357
Sfr274I	CTCGAG	1 cut(s)	350
SfuI	TTCGAA	1 cut(s)	132
SinI	GGWCC	1 cut(s)	304
SlaI	CTCGAG	1 cut(s)	350
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
SseBI	AGGCCT	1 cut(s)	43
SsiI	CCGC	2 cut(s)	10, 91
SstI	GAGCTC	1 cut(s)	357
StuI	AGGCCT	1 cut(s)	43
TaiI	ACGT	1 cut(s)	297
TaqI	TCGA	5 cut(s)	61, 132, 143, 153, 351
TauI	GCSGC	1 cut(s)	93
TfiI	GAWTC	1 cut(s)	140
TseI	GCWGC	2 cut(s)	51, 242
VpaK11BI	GGWCC	1 cut(s)	304
XhoI	CTCGAG	1 cut(s)	350
XmiI	GTMKAC	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.