Rorug05G0318000

Ubiquitin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0012903
Physical Location & Seq
Forward (+)
37795641 .. 37796133
493 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0318000.1

Sequence Viewer

Length: 405 bp
ATGGATCCTCTTCCGCAAGAAGTCGACGATTACATCAGAGAGTCGATTGACCACACCCTCAGCATCCCCGTGTCGGCACAGACTCTCGAATTGAAGAAGCTCCGGTGCTCGGAAGCCACAAAGCGACGGCTGCGCGACCAGTACACGGCCGAAGCTTGTATGAACGCTCAGGCTTTGAGGAAGTTTGTGGAGGAGAATCAGAGACTAGCGGCAGAGTGTGCGCATCTGGTGAGTCAGTGTAACAAGTTGGAGAAGGAGTGCTCGCTCTGTGATCATGACCGAGAGGCTTTAATGGATTTCGGAAGCGAGGCAGACCAGAGGGCCAACGAGGCTGAGTTTTGGGTCGAAGTGTTGGAGGATGAACTGGGAGAATTGAGGGAAGAATTGAAGTTTTACAAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04212 map04212
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

134

Amino Acids

15.6

Weight (kDa)

4.68

Isoelectric Point (pI)

47.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 222
AccI GTMKAC 1 cut(s) 24
AccII CGCG 1 cut(s) 135
AciI CCGC 2 cut(s) 14, 209
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 147
AfaI GTAC 1 cut(s) 143
AfiI CCNNNNNNNGG 3 cut(s) 73, 109, 145
AgsI TTSAA 2 cut(s) 94, 388
AluBI AGCT 2 cut(s) 100, 155
AluI AGCT 2 cut(s) 100, 155
Alw21I GWGCWC 2 cut(s) 110, 263
Alw26I GTCTC 1 cut(s) 196
AlwI GGATC 1 cut(s) 12
AoxI GGCC 2 cut(s) 147, 321
ApeKI GCWGC 1 cut(s) 130
AspLEI GCGC 2 cut(s) 135, 223
AspS9I GGNCC 1 cut(s) 321
AsuHPI GGTGA 1 cut(s) 241
BamHI GGATCC 1 cut(s) 4
Bbv12I GWGCWC 2 cut(s) 110, 263
BbvCI CCTCAGC 1 cut(s) 59
BbvI GCAGC 1 cut(s) 117
BceAI ACGGC 2 cut(s) 143, 162
BclI TGATCA 1 cut(s) 271
BcoDI GTCTC 1 cut(s) 196
BfaI CTAG 1 cut(s) 206
BglI GCCNNNNNGGC 1 cut(s) 329
BisI GCNGC 2 cut(s) 131, 210
BlsI GCNGC 2 cut(s) 132, 211
BmgT120I GGNCC 1 cut(s) 321
BmiI GGNNCC 1 cut(s) 6
BmrI ACTGGG 1 cut(s) 374
BmsI GCATC 2 cut(s) 72, 232
BmuI ACTGGG 1 cut(s) 374
Bpu10I CCTNAGC 2 cut(s) 59, 168
BsaWI WCCGGW 1 cut(s) 102
BsaXI ACNNNNNCTCC 2 cut(s) 242, 272
Bsc4I CCNNNNNNNGG 3 cut(s) 73, 109, 145
Bse1I ACTGG 2 cut(s) 139, 369
BseGI GGATG 2 cut(s) 63, 364
BseLI CCNNNNNNNGG 3 cut(s) 73, 109, 145
BseMII CTCAG 3 cut(s) 73, 182, 324
BseNI ACTGG 2 cut(s) 139, 369
BseRI GAGGAG 1 cut(s) 206
BseX3I CGGCCG 1 cut(s) 147
BseXI GCAGC 1 cut(s) 117
Bsh1236I CGCG 1 cut(s) 135
Bsh1285I CGRYCG 1 cut(s) 150
BshFI GGCC 2 cut(s) 149, 323
BsiEI CGRYCG 1 cut(s) 150
BsiHKAI GWGCWC 2 cut(s) 110, 263
BsiSI CCGG 1 cut(s) 103
BslI CCNNNNNNNGG 3 cut(s) 73, 109, 145
BsmAI GTCTC 1 cut(s) 196
BsnI GGCC 2 cut(s) 149, 323
Bsp1286I GDGCHC 2 cut(s) 110, 263
Bsp143I GATC 2 cut(s) 4, 271
BspACI CCGC 2 cut(s) 14, 209
BspANI GGCC 2 cut(s) 149, 323
BspCNI CTCAG 3 cut(s) 72, 181, 325
BspFNI CGCG 1 cut(s) 135
BspHI TCATGA 1 cut(s) 274
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 12
BsrI ACTGG 2 cut(s) 139, 369
BssMI GATC 2 cut(s) 4, 271
Bst6I CTCTTC 1 cut(s) 15
BstAPI GCANNNNNTGC 1 cut(s) 218
BstC8I GCNNGC 1 cut(s) 263
BstDEI CTNAG 3 cut(s) 59, 168, 333
BstF5I GGATG 2 cut(s) 63, 364
BstFNI CGCG 1 cut(s) 135
BstHHI GCGC 2 cut(s) 135, 223
BstKTI GATC 2 cut(s) 7, 274
BstMAI GTCTC 1 cut(s) 196
BstMBI GATC 2 cut(s) 4, 271
BstMCI CGRYCG 1 cut(s) 150
BstMWI GCNNNNNNNGC 3 cut(s) 130, 218, 329
BstUI CGCG 1 cut(s) 135
BstV1I GCAGC 1 cut(s) 117
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BstZI CGGCCG 1 cut(s) 147
BsuRI GGCC 2 cut(s) 149, 323
BtsCI GGATG 2 cut(s) 63, 364
BtsIMutI CAGTG 1 cut(s) 242
Cac8I GCNNGC 1 cut(s) 263
CciI TCATGA 1 cut(s) 274
CfoI GCGC 2 cut(s) 135, 223
Cfr13I GGNCC 1 cut(s) 321
Csp6I GTAC 1 cut(s) 142
CviAII CATG 1 cut(s) 275
CviJI RGCY 9 cut(s) 100, 116, 130, 149, 155, 173, 287, 323, 332
CviKI_1 RGCY 9 cut(s) 100, 116, 130, 149, 155, 173, 287, 323, 332
CviQI GTAC 1 cut(s) 142
DdeI CTNAG 3 cut(s) 59, 168, 333
DpnI GATC 2 cut(s) 6, 273
DpnII GATC 2 cut(s) 4, 271
EaeI YGGCCR 1 cut(s) 147
EagI CGGCCG 1 cut(s) 147
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
EclXI CGGCCG 1 cut(s) 147
Eco52I CGGCCG 1 cut(s) 147
FaeI CATG 1 cut(s) 278
FaiI YATR 2 cut(s) 161, 276
FatI CATG 1 cut(s) 274
FbaI TGATCA 1 cut(s) 271
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 2 cut(s) 131, 210
FokI GGATG 2 cut(s) 50, 371
Fsp4HI GCNGC 2 cut(s) 131, 210
FspAI RTGCGCAY 1 cut(s) 222
FspBI CTAG 1 cut(s) 206
FspI TGCGCA 1 cut(s) 222
GlaI GCGC 2 cut(s) 134, 222
GluI GCNGC 2 cut(s) 131, 210
HaeIII GGCC 2 cut(s) 149, 323
HapII CCGG 1 cut(s) 103
HhaI GCGC 2 cut(s) 135, 223
Hin1II CATG 1 cut(s) 278
Hin6I GCGC 2 cut(s) 133, 221
HinP1I GCGC 2 cut(s) 133, 221
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HindIII AAGCTT 1 cut(s) 153
HinfI GANTC 4 cut(s) 41, 82, 196, 232
HpaII CCGG 1 cut(s) 103
HphI GGTGA 1 cut(s) 241
Hpy166II GTNNAC 2 cut(s) 25, 144
Hpy188I TCNGA 4 cut(s) 38, 112, 201, 302
Hpy188III TCNNGA 2 cut(s) 86, 275
Hpy8I GTNNAC 2 cut(s) 25, 144
Hpy99I CGWCG 2 cut(s) 29, 129
HpyAV CCTTC 1 cut(s) 247
HpyF10VI GCNNNNNNNGC 3 cut(s) 130, 218, 329
HpyF3I CTNAG 3 cut(s) 59, 168, 333
Hsp92II CATG 1 cut(s) 278
HspAI GCGC 2 cut(s) 133, 221
Ksp22I TGATCA 1 cut(s) 271
Kzo9I GATC 2 cut(s) 4, 271
LmnI GCTCC 1 cut(s) 105
LpnPI CCDG 6 cut(s) 116, 152, 155, 212, 329, 350
Lsp1109I GCAGC 1 cut(s) 117
LweI GCATC 2 cut(s) 72, 232
MaeI CTAG 1 cut(s) 206
MaeIII GTNAC 1 cut(s) 239
MalI GATC 2 cut(s) 6, 273
MboI GATC 2 cut(s) 4, 271
MboII GAAGA 2 cut(s) 106, 392
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 2 cut(s) 110, 263
MluCI AATT 3 cut(s) 89, 371, 383
MlyI GAGTC 3 cut(s) 50, 76, 241
MmeI TCCRAC 2 cut(s) 228, 333
MseI TTAA 1 cut(s) 290
MslI CAYNNNNRTG 1 cut(s) 68
MspI CCGG 1 cut(s) 103
MvnI CGCG 1 cut(s) 135
MwoI GCNNNNNNNGC 3 cut(s) 130, 218, 329
NdeII GATC 2 cut(s) 4, 271
NlaIII CATG 1 cut(s) 278
NlaIV GGNNCC 1 cut(s) 6
NsbI TGCGCA 1 cut(s) 222
PagI TCATGA 1 cut(s) 274
PfeI GAWTC 1 cut(s) 196
PkrI GCNGC 2 cut(s) 132, 211
PleI GAGTC 3 cut(s) 49, 76, 240
PpsI GAGTC 3 cut(s) 49, 76, 240
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 321
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
RseI CAYNNNNRTG 1 cut(s) 68
SalI GTCGAC 1 cut(s) 23
SaqAI TTAA 1 cut(s) 290
SatI GCNGC 2 cut(s) 131, 210
Sau3AI GATC 2 cut(s) 4, 271
Sau96I GGNCC 1 cut(s) 321
SchI GAGTC 3 cut(s) 50, 76, 241
SduI GDGCHC 2 cut(s) 110, 263
SetI ASST 2 cut(s) 102, 157
SfaNI GCATC 2 cut(s) 72, 232
SmiMI CAYNNNNRTG 1 cut(s) 68
Sse9I AATT 3 cut(s) 89, 371, 383
SsiI CCGC 2 cut(s) 14, 209
SspMI CTAG 1 cut(s) 206
TaqI TCGA 4 cut(s) 24, 44, 87, 345
TaqII GACCGA 1 cut(s) 294
TasI AATT 3 cut(s) 89, 371, 383
TatI WGTACW 1 cut(s) 141
TauI GCSGC 1 cut(s) 212
TfiI GAWTC 1 cut(s) 196
Tru1I TTAA 1 cut(s) 290
Tru9I TTAA 1 cut(s) 290
TscAI CASTG 1 cut(s) 242
TseI GCWGC 1 cut(s) 130
TspDTI ATGAA 2 cut(s) 176, 375
TspRI CASTG 1 cut(s) 242
XmiI GTMKAC 1 cut(s) 24
XspI CTAG 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.