Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0012903

Physical Location & Seq

Genomic Coordinates Reverse (-)

8068182 .. 8071215

Gene Structure 3034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0102900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1677 bp

ATGGAGCCCGATAAAAGCGGCGTGAATGGGGGAGTGCCCGGGTCGGGTTTGCGGGCGGAGATCGACACGTCGGCGCCGTTTGAATCGGTGAAGGAGGCGGTGAGTCGATTCGGTGGAGTCGGGTACTGGAAACCCTCAAATGCTAATAACAAGTATTGGGAGCCTGAGCATGACATGGAAGAGGTCGACACTGAAAAACTGGAGGAGCAGGCTTTACAGTTGGAGAAAGATCTCACTTTGAAAGAAAGGGAAACTCTTGATGTTCTAATAGAACTGGAACAAACCAAAAAGATTATTGATGAATTGAAGAAAAGGCTACAGAAAGAAGTATCTGAAGTGGACCTCGAGACGGATGTAGGTAAGGACTACATGACTCCTGTGGTAAATGAAGCAGATAAGGAAAACCATGGGAACAATGGCAGCCATTGCAATGCACGGGAAGGTGTGAGCTCTTGTCCTTCTTCAGCACCAGGTTTAATCTTAATGGAATTGAAACAAGCTAAGGTGAACCTTACCAGGACTACTAGTGATCTTGCTGACATTCGGGCTTCCGTTGAAACATTCAACAAGAAATTAGAGAAGGAAAGAGTCGCACTTGAGAAGACCCGTGTGAGGTTAACTTCAAATTCTTTAAAAATGTTGTCTCTTGAAGAAGAGCTCAACCAGACGAAACAAAAACTACAGTTGGCAAAGGATGCTGAATCTAAAGGTGCCCCTGATAAGTCTTTAGATATTTCAAAGGAGCTTCGACGACTGAGTTCTGAGACGGAGCAGTTCAAAAAAATGGCAGAAGCTGCCAAGTTAGAGGTTTCGAGAGCAACTTCCGAGATTGAGCAGACGAGAGGTAAGATAAAGACAGCTGAAATCAGGTTGGTTGCCGCAAGAAAGATGAAAGCAGCAGCTAGAGCTGCAGAAGCTTTTGCTCTTGCAGAAATTAAGGCTCTATCAAACCAGGAGAATTCATCTGGAGATGCATTGCAGAAACCTGAAGGAGTAACTCTTTCATTTGAAGAATACTCAACCCTAACCCGCAAGGTTCGAGATGCAGAAGAGCTTTCTAAGAAGAGAGTAAGAGATGCCATGAAGCATGTTGATGATGCAAATGTATCGAAAACAGAAATCTTGAAGAAAGTAGAGGAAGCAACCGAGGAAGTCAAAACCAGTAAAAAGGCATTGGAAGAAGCACTGAACCGAGTGGAGGCTGCAAATAGGGGCAAGCTGGCAGTGGAAGAAGCTCTTCGCAAATGGAGATCCCAGCATGGTCAAAAAAGACGTTCTTCGGTACACAACTCTACCAAGTTCAAGAATCCTTGCCCATCAAATCATGCCAGAGAGTTGGAATTGCGTGACGTAAATGGTCTGAATCTAGTTGGTGATGAATCAATGCCGGTTCTGAGGCCAACCTTATCAATCGGACAAATCCTAAGCAGGAAGTTGCTTATGCCTGAAGAGGATGAAATGGAACTGACCGAAAAGACACCTATAAAACAAAAGGTGTCACTGGGTCAGATGCTCAGCAAGCAAAACGGTGATCAACCCTCTTCTAAGAAGTTTGAGAAGGAAAGTGGTCTCAAGAATTTTTCTGCTAAAAGAAAGAAGTCCGGATTTGCTCGGTTCTCACTTCTTTTGACAAAGCAAAGCAGGAAGAAGAAGAAGCCAACTCCAGACTTGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006464 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0019538 GO:0031386 GO:0034641 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04212 map04212

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

558

Amino Acids

62.51

Weight (kDa)

8.99

Isoelectric Point (pI)

45.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WEMBL	PF05701	19 - 109	2.2e-16	Weak chloroplast movement under blue light
WEMBL	PF05701	161 - 423	4.1e-50	Weak chloroplast movement under blue light

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42300
fragaria_vesca	FvH4_6g15950
prunus_persica	Prupe.6G102700_v2.0.a1 Prupe.6G102700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0469651
rosa_multiflora	Rmu_co8219234.1_g000001 Rmu_sc0006483.1_g000021 Rmu_sc0018944.1_g000005
rosa_roxburghii	Rroxscaffold_6G00411600
rosa_rugosa	Rorug03G0102900 Rorug03G0103000 Rorug05G0318000
rosa_samantha	Rh3AG152600 Rh3BG176400 Rh3CG167400 Rh3DG199200 Rh5DG411000
rosa_wichuraiana	Rw3G014390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	73, 710
AccI	GTMKAC	1 cut(s)	186
AccIII	TCCGGA	1 cut(s)	1601
AciI	CCGC	6 cut(s)	18, 52, 56, 98, 879, 1030
AclWI	GGATC	1 cut(s)	1245
AcsI	RAATTY	3 cut(s)	625, 958, 1576
AcuI	CTGAAG	4 cut(s)	354, 447, 1008, 1467
AcyI	GRCGYC	1 cut(s)	74
AfaI	GTAC	2 cut(s)	125, 1284
AfiI	CCNNNNNNNGG	4 cut(s)	44, 349, 612, 1198
AflIII	ACRYGT	1 cut(s)	66
AhlI	ACTAGT	1 cut(s)	524
AjiI	CACGTC	1 cut(s)	69
AjnI	CCWGG	3 cut(s)	469, 515, 951
Alw21I	GWGCWC	2 cut(s)	452, 660
Alw26I	GTCTC	4 cut(s)	341, 648, 758, 1574
AlwI	GGATC	1 cut(s)	1245
AlwNI	CAGNNNCTG	1 cut(s)	794
Ama87I	CYCGRG	2 cut(s)	38, 344
Aor13HI	TCCGGA	1 cut(s)	1601
AoxI	GGCC	1 cut(s)	1397
ApeKI	GCWGC	6 cut(s)	420, 794, 896, 899, 908, 1202
ApoI	RAATTY	3 cut(s)	625, 958, 1576
Asp700I	GAANNNNTTC	1 cut(s)	1236
AspLEI	GCGC	1 cut(s)	76
AspS9I	GGNCC	1 cut(s)	340
AsuC2I	CCSGG	2 cut(s)	39, 40
AsuHPI	GGTGA	5 cut(s)	100, 112, 517, 1385, 1541
AvaI	CYCGRG	2 cut(s)	38, 344
AvaII	GGWCC	1 cut(s)	340
BaeGI	GKGCMC	2 cut(s)	39, 715
BanI	GGYRCC	2 cut(s)	73, 710
BanII	GRGCYC	3 cut(s)	9, 452, 660
BbsI	GAAGAC	1 cut(s)	608
Bbv12I	GWGCWC	2 cut(s)	452, 660
BbvI	GCAGC	6 cut(s)	432, 781, 895, 908, 911, 1189
BccI	CCATC	1 cut(s)	1324
BceAI	ACGGC	1 cut(s)	61
BcgI	CGANNNNNNTGC	2 cut(s)	1089, 1123
BciT130I	CCWGG	3 cut(s)	471, 517, 953
BclI	TGATCA	1 cut(s)	1531
BcnI	CCSGG	2 cut(s)	39, 40
BcoDI	GTCTC	4 cut(s)	341, 648, 758, 1574
BcuI	ACTAGT	1 cut(s)	524
BfaI	CTAG	3 cut(s)	525, 903, 1367
BfmI	CTRYAG	3 cut(s)	317, 680, 909
BfoI	RGCGCY	1 cut(s)	77
BglII	AGATCT	1 cut(s)	229
BisI	GCNGC	8 cut(s)	19, 421, 795, 879, 897, 900, 909, 1203
BlpI	GCTNAGC	1 cut(s)	1514
BlsI	GCNGC	8 cut(s)	20, 422, 796, 880, 898, 901, 910, 1204
Bme1390I	CCNGG	5 cut(s)	39, 40, 471, 517, 953
Bme18I	GGWCC	1 cut(s)	340
BmeT110I	CYCGRG	2 cut(s)	38, 344
BmgBI	CACGTC	1 cut(s)	69
BmgT120I	GGNCC	1 cut(s)	340
BmiI	GGNNCC	4 cut(s)	6, 75, 162, 712
BmrFI	CCNGG	5 cut(s)	39, 40, 471, 517, 953
BmrI	ACTGGG	1 cut(s)	1511
BmsI	GCATC	6 cut(s)	685, 961, 1033, 1066, 1087, 1500
BmuI	ACTGGG	1 cut(s)	1511
BpiI	GAAGAC	1 cut(s)	608
BpmI	CTGGAG	3 cut(s)	221, 987, 1647
Bpu10I	CCTNAGC	3 cut(s)	165, 501, 1424
Bpu1102I	GCTNAGC	1 cut(s)	1514
BpuEI	CTTGAG	2 cut(s)	617, 1556
BpuMI	CCSGG	2 cut(s)	39, 40
BsaHI	GRCGYC	1 cut(s)	74
BsaI	GGTCTC	1 cut(s)	1574
BsaJI	CCNNGG	3 cut(s)	38, 406, 1146
BsaWI	WCCGGW	1 cut(s)	1601
Bsc4I	CCNNNNNNNGG	4 cut(s)	44, 349, 612, 1198
Bse118I	RCCGGY	1 cut(s)	1387
Bse1I	ACTGG	5 cut(s)	131, 204, 279, 1161, 1506
Bse3DI	GCAATG	3 cut(s)	424, 436, 974
BseAI	TCCGGA	1 cut(s)	1601
BseBI	CCWGG	3 cut(s)	471, 517, 953
BseDI	CCNNGG	3 cut(s)	38, 406, 1146
BseGI	GGATG	3 cut(s)	358, 700, 1459
BseLI	CCNNNNNNNGG	4 cut(s)	44, 349, 612, 1198
BseMI	GCAATG	3 cut(s)	424, 436, 974
BseMII	CTCAG	5 cut(s)	156, 746, 753, 1385, 1528
BseNI	ACTGG	5 cut(s)	131, 204, 279, 1161, 1506
BseRI	GAGGAG	1 cut(s)	218
BseSI	GKGCMC	2 cut(s)	39, 715
BseXI	GCAGC	6 cut(s)	432, 781, 895, 908, 911, 1189
BseYI	CCCAGC	1 cut(s)	1254
BshFI	GGCC	1 cut(s)	1399
BshNI	GGYRCC	2 cut(s)	73, 710
BsiHKAI	GWGCWC	2 cut(s)	452, 660
BsiHKCI	CYCGRG	2 cut(s)	38, 344
BsiSI	CCGG	3 cut(s)	39, 1388, 1602
BslI	CCNNNNNNNGG	4 cut(s)	44, 349, 612, 1198
BsmAI	GTCTC	4 cut(s)	341, 648, 758, 1574
BsmBI	CGTCTC	2 cut(s)	341, 758
BsnI	GGCC	1 cut(s)	1399
Bso31I	GGTCTC	1 cut(s)	1574
BsoBI	CYCGRG	2 cut(s)	38, 344
Bsp1286I	GDGCHC	5 cut(s)	9, 39, 452, 660, 715
Bsp13I	TCCGGA	1 cut(s)	1601
Bsp143I	GATC	5 cut(s)	60, 229, 529, 1250, 1531
Bsp1720I	GCTNAGC	1 cut(s)	1514
Bsp19I	CCATGG	1 cut(s)	406
BspACI	CCGC	6 cut(s)	18, 52, 56, 98, 879, 1030
BspANI	GGCC	1 cut(s)	1399
BspCNI	CTCAG	5 cut(s)	157, 747, 754, 1386, 1527
BspEI	TCCGGA	1 cut(s)	1601
BspLI	GGNNCC	4 cut(s)	6, 75, 162, 712
BspMAI	CTGCAG	1 cut(s)	913
BspPI	GGATC	1 cut(s)	1245
BspQI	GCTCTTC	3 cut(s)	648, 1044, 1242
BspT107I	GGYRCC	2 cut(s)	73, 710
BspTNI	GGTCTC	1 cut(s)	1574
BsrDI	GCAATG	3 cut(s)	424, 436, 974
BsrFI	RCCGGY	1 cut(s)	1387
BsrI	ACTGG	5 cut(s)	131, 204, 279, 1161, 1506
BssAI	RCCGGY	1 cut(s)	1387
BssECI	CCNNGG	3 cut(s)	38, 406, 1146
BssMI	GATC	5 cut(s)	60, 229, 529, 1250, 1531
BssNI	GRCGYC	1 cut(s)	74
BssT1I	CCWWGG	1 cut(s)	406
Bst2UI	CCWGG	3 cut(s)	471, 517, 953
Bst4CI	ACNGT	3 cut(s)	219, 684, 1529
Bst6I	CTCTTC	7 cut(s)	174, 648, 1044, 1058, 1242, 1443, 1546
BstACI	GRCGYC	1 cut(s)	74
BstAPI	GCANNNNNTGC	3 cut(s)	426, 695, 794
BstC8I	GCNNGC	5 cut(s)	54, 210, 1217, 1221, 1520
BstDEI	CTNAG	9 cut(s)	165, 501, 755, 762, 1059, 1394, 1424, 1514, 1545
BstDSI	CCRYGG	1 cut(s)	406
BstF5I	GGATG	3 cut(s)	358, 700, 1459
BstH2I	RGCGCY	1 cut(s)	77
BstHHI	GCGC	1 cut(s)	76
BstKTI	GATC	5 cut(s)	63, 232, 532, 1253, 1534
BstMAI	GTCTC	4 cut(s)	341, 648, 758, 1574
BstMBI	GATC	5 cut(s)	60, 229, 529, 1250, 1531
BstMWI	GCNNNNNNNGC	7 cut(s)	426, 695, 794, 905, 908, 914, 1519
BstNI	CCWGG	3 cut(s)	471, 517, 953
BstNSI	RCATGY	1 cut(s)	1091
BstSCI	CCNGG	5 cut(s)	37, 38, 469, 515, 951
BstSFI	CTRYAG	3 cut(s)	317, 680, 909
BstSLI	GKGCMC	2 cut(s)	39, 715
BstV1I	GCAGC	6 cut(s)	432, 781, 895, 908, 911, 1189
BstV2I	GAAGAC	1 cut(s)	608
BstX2I	RGATCY	2 cut(s)	229, 1250
BstXI	CCANNNNNNTGG	1 cut(s)	1336
BstYI	RGATCY	2 cut(s)	229, 1250
BsuRI	GGCC	1 cut(s)	1399
BtgI	CCRYGG	1 cut(s)	406
BtrI	CACGTC	1 cut(s)	69
BtsCI	GGATG	3 cut(s)	358, 700, 1459
BtsI	GCAGTG	1 cut(s)	1230
BtsIMutI	CAGTG	4 cut(s)	189, 1184, 1230, 1499
Cac8I	GCNNGC	5 cut(s)	54, 210, 1217, 1221, 1520
CaiI	CAGNNNCTG	1 cut(s)	794
CfoI	GCGC	1 cut(s)	76
Cfr10I	RCCGGY	1 cut(s)	1387
Cfr13I	GGNCC	1 cut(s)	340
Cfr9I	CCCGGG	1 cut(s)	38
CsiI	ACCWGGT	1 cut(s)	469
Csp6I	GTAC	2 cut(s)	124, 1283
CviAII	CATG	8 cut(s)	170, 175, 370, 407, 1081, 1088, 1259, 1325
CviQI	GTAC	2 cut(s)	124, 1283
DdeI	CTNAG	9 cut(s)	165, 501, 755, 762, 1059, 1394, 1424, 1514, 1545
DinI	GGCGCC	1 cut(s)	75
DpnI	GATC	5 cut(s)	62, 231, 531, 1252, 1533
DpnII	GATC	5 cut(s)	60, 229, 529, 1250, 1531
DraI	TTTAAA	1 cut(s)	633
Eam1104I	CTCTTC	7 cut(s)	174, 648, 1044, 1058, 1242, 1443, 1546
EarI	CTCTTC	7 cut(s)	174, 648, 1044, 1058, 1242, 1443, 1546
EciI	GGCGGA	1 cut(s)	71
Ecl136II	GAGCTC	2 cut(s)	450, 658
Eco130I	CCWWGG	1 cut(s)	406
Eco24I	GRGCYC	3 cut(s)	9, 452, 660
Eco31I	GGTCTC	1 cut(s)	1574
Eco47I	GGWCC	1 cut(s)	340
Eco53kI	GAGCTC	2 cut(s)	450, 658
Eco57I	CTGAAG	4 cut(s)	354, 447, 1008, 1467
Eco88I	CYCGRG	2 cut(s)	38, 344
EcoICRI	GAGCTC	2 cut(s)	450, 658
EcoRI	GAATTC	1 cut(s)	958
EcoRII	CCWGG	3 cut(s)	469, 515, 951
EcoT14I	CCWWGG	1 cut(s)	406
EcoT22I	ATGCAT	1 cut(s)	976
EcoT38I	GRGCYC	3 cut(s)	9, 452, 660
EgeI	GGCGCC	1 cut(s)	75
EheI	GGCGCC	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	406
Esp3I	CGTCTC	2 cut(s)	341, 758
FaeI	CATG	8 cut(s)	173, 178, 373, 410, 1084, 1091, 1262, 1328
FalI	AAGNNNNNCTT	4 cut(s)	1221, 1253, 1261, 1293
FatI	CATG	8 cut(s)	169, 174, 369, 406, 1080, 1087, 1258, 1324
FauI	CCCGC	2 cut(s)	45, 1037
FbaI	TGATCA	1 cut(s)	1531
FblI	GTMKAC	1 cut(s)	186
Fnu4HI	GCNGC	8 cut(s)	19, 421, 795, 879, 897, 900, 909, 1203
FokI	GGATG	3 cut(s)	365, 707, 1466
FriOI	GRGCYC	3 cut(s)	9, 452, 660
Fsp4HI	GCNGC	8 cut(s)	19, 421, 795, 879, 897, 900, 909, 1203
FspBI	CTAG	3 cut(s)	525, 903, 1367
GlaI	GCGC	1 cut(s)	75
GluI	GCNGC	8 cut(s)	19, 421, 795, 879, 897, 900, 909, 1203
GsaI	CCCAGC	1 cut(s)	1258
GsuI	CTGGAG	3 cut(s)	221, 987, 1647
HaeII	RGCGCY	1 cut(s)	77
HaeIII	GGCC	1 cut(s)	1399
HapII	CCGG	3 cut(s)	39, 1388, 1602
HhaI	GCGC	1 cut(s)	76
Hin1I	GRCGYC	1 cut(s)	74
Hin1II	CATG	8 cut(s)	173, 178, 373, 410, 1084, 1091, 1262, 1328
Hin6I	GCGC	1 cut(s)	74
HinP1I	GCGC	1 cut(s)	74
HincII	GTYRAC	2 cut(s)	187, 618
HindII	GTYRAC	2 cut(s)	187, 618
HindIII	AAGCTT	1 cut(s)	915
HpaI	GTTAAC	1 cut(s)	618
HpaII	CCGG	3 cut(s)	39, 1388, 1602
HphI	GGTGA	5 cut(s)	100, 112, 517, 1385, 1541
Hpy166II	GTNNAC	5 cut(s)	187, 340, 508, 618, 1285
Hpy188I	TCNGA	7 cut(s)	334, 763, 826, 1362, 1395, 1415, 1509
Hpy8I	GTNNAC	5 cut(s)	187, 340, 508, 618, 1285
Hpy99I	CGWCG	2 cut(s)	73, 753
HpyAV	CCTTC	6 cut(s)	85, 434, 468, 574, 983, 1552
HpyCH4III	ACNGT	3 cut(s)	219, 684, 1529
HpyCH4IV	ACGT	3 cut(s)	68, 1273, 1350
HpyCH4V	TGCA	9 cut(s)	429, 434, 911, 929, 974, 979, 1046, 1100, 1205
HpyF10VI	GCNNNNNNNGC	7 cut(s)	426, 695, 794, 905, 908, 914, 1519
HpyF3I	CTNAG	9 cut(s)	165, 501, 755, 762, 1059, 1394, 1424, 1514, 1545
HpySE526I	ACGT	3 cut(s)	68, 1273, 1350
Hsp92I	GRCGYC	1 cut(s)	74
Hsp92II	CATG	8 cut(s)	173, 178, 373, 410, 1084, 1091, 1262, 1328
HspAI	GCGC	1 cut(s)	74
KasI	GGCGCC	1 cut(s)	73
Kpn2I	TCCGGA	1 cut(s)	1601
Ksp22I	TGATCA	1 cut(s)	1531
KspAI	GTTAAC	1 cut(s)	618
Kzo9I	GATC	5 cut(s)	60, 229, 529, 1250, 1531
LguI	GCTCTTC	3 cut(s)	648, 1044, 1242
LmnI	GCTCC	5 cut(s)	4, 160, 205, 742, 769
Lsp1109I	GCAGC	6 cut(s)	432, 781, 895, 908, 911, 1189
LweI	GCATC	6 cut(s)	685, 961, 1033, 1066, 1087, 1500
MabI	ACCWGGT	1 cut(s)	469
MaeI	CTAG	3 cut(s)	525, 903, 1367
MaeII	ACGT	3 cut(s)	68, 1273, 1350
MaeIII	GTNAC	3 cut(s)	994, 1346, 1497
MalI	GATC	5 cut(s)	62, 231, 531, 1252, 1533
MboI	GATC	5 cut(s)	60, 229, 529, 1250, 1531
MflI	RGATCY	2 cut(s)	229, 1250
MhlI	GDGCHC	5 cut(s)	9, 39, 452, 660, 715
MluCI	AATT	8 cut(s)	302, 488, 572, 625, 933, 958, 1340, 1576
Mly113I	GGCGCC	1 cut(s)	74
MlyI	GAGTC	4 cut(s)	112, 126, 367, 597
MmeI	TCCRAC	2 cut(s)	201, 1317
Mph1103I	ATGCAT	1 cut(s)	976
MroI	TCCGGA	1 cut(s)	1601
MroXI	GAANNNNTTC	1 cut(s)	1236
MseI	TTAA	5 cut(s)	476, 482, 617, 632, 936
MslI	CAYNNNNRTG	2 cut(s)	429, 1092
MspA1I	CMGCKG	1 cut(s)	860
MspI	CCGG	3 cut(s)	39, 1388, 1602
MspR9I	CCNGG	5 cut(s)	39, 40, 471, 517, 953
MvaI	CCWGG	3 cut(s)	471, 517, 953
MwoI	GCNNNNNNNGC	7 cut(s)	426, 695, 794, 905, 908, 914, 1519
NarI	GGCGCC	1 cut(s)	74
NciI	CCSGG	2 cut(s)	39, 40
NcoI	CCATGG	1 cut(s)	406
NdeII	GATC	5 cut(s)	60, 229, 529, 1250, 1531
NlaIII	CATG	8 cut(s)	173, 178, 373, 410, 1084, 1091, 1262, 1328
NlaIV	GGNNCC	4 cut(s)	6, 75, 162, 712
NmuCI	GTSAC	2 cut(s)	1346, 1497
NsiI	ATGCAT	1 cut(s)	976
NspI	RCATGY	1 cut(s)	1091
PaeR7I	CTCGAG	1 cut(s)	344
PciSI	GCTCTTC	3 cut(s)	648, 1044, 1242
PcsI	WCGNNNNNNNCGW	1 cut(s)	74
PdmI	GAANNNNTTC	1 cut(s)	1236
PfeI	GAWTC	6 cut(s)	83, 108, 701, 1306, 1363, 1379
PkrI	GCNGC	8 cut(s)	20, 422, 796, 880, 898, 901, 910, 1204
PleI	GAGTC	4 cut(s)	111, 125, 367, 596
PluTI	GGCGCC	1 cut(s)	77
PpsI	GAGTC	4 cut(s)	111, 125, 367, 596
Psp124BI	GAGCTC	2 cut(s)	452, 660
Psp6I	CCWGG	3 cut(s)	469, 515, 951
PspFI	CCCAGC	1 cut(s)	1254
PspGI	CCWGG	3 cut(s)	469, 515, 951
PspN4I	GGNNCC	4 cut(s)	6, 75, 162, 712
PspPI	GGNCC	1 cut(s)	340
PstI	CTGCAG	1 cut(s)	913
PstNI	CAGNNNCTG	1 cut(s)	794
PsuI	RGATCY	2 cut(s)	229, 1250
PvuII	CAGCTG	1 cut(s)	860
RsaI	GTAC	2 cut(s)	125, 1284
RsaNI	GTAC	2 cut(s)	124, 1283
RseI	CAYNNNNRTG	2 cut(s)	429, 1092
SacI	GAGCTC	2 cut(s)	452, 660
SalI	GTCGAC	1 cut(s)	185
SapI	GCTCTTC	3 cut(s)	648, 1044, 1242
SaqAI	TTAA	5 cut(s)	476, 482, 617, 632, 936
SatI	GCNGC	8 cut(s)	19, 421, 795, 879, 897, 900, 909, 1203
Sau3AI	GATC	5 cut(s)	60, 229, 529, 1250, 1531
Sau96I	GGNCC	1 cut(s)	340
SchI	GAGTC	4 cut(s)	112, 126, 367, 597
ScrFI	CCNGG	5 cut(s)	39, 40, 471, 517, 953
SduI	GDGCHC	5 cut(s)	9, 39, 452, 660, 715
SexAI	ACCWGGT	1 cut(s)	469
SfaNI	GCATC	6 cut(s)	685, 961, 1033, 1066, 1087, 1500
SfcI	CTRYAG	3 cut(s)	317, 680, 909
SfoI	GGCGCC	1 cut(s)	75
Sfr274I	CTCGAG	1 cut(s)	344
SinI	GGWCC	1 cut(s)	340
SlaI	CTCGAG	1 cut(s)	344
SmaI	CCCGGG	1 cut(s)	40
SmiMI	CAYNNNNRTG	2 cut(s)	429, 1092
SmlI	CTYRAG	3 cut(s)	344, 596, 1571
SmoI	CTYRAG	3 cut(s)	344, 596, 1571
SpeI	ACTAGT	1 cut(s)	524
Sse9I	AATT	8 cut(s)	302, 488, 572, 625, 933, 958, 1340, 1576
SsiI	CCGC	6 cut(s)	18, 52, 56, 98, 879, 1030
SspDI	GGCGCC	1 cut(s)	73
SspMI	CTAG	3 cut(s)	525, 903, 1367
SstI	GAGCTC	2 cut(s)	452, 660
StyD4I	CCNGG	5 cut(s)	37, 38, 469, 515, 951
StyI	CCWWGG	1 cut(s)	406
TaaI	ACNGT	3 cut(s)	219, 684, 1529
TaiI	ACGT	3 cut(s)	71, 1276, 1353
TaqI	TCGA	8 cut(s)	63, 106, 186, 345, 748, 812, 1039, 1109
TaqII	GACCGA	1 cut(s)	1484
TasI	AATT	8 cut(s)	302, 488, 572, 625, 933, 958, 1340, 1576
TauI	GCSGC	2 cut(s)	21, 881
TfiI	GAWTC	6 cut(s)	83, 108, 701, 1306, 1363, 1379
Tru1I	TTAA	5 cut(s)	476, 482, 617, 632, 936
Tru9I	TTAA	5 cut(s)	476, 482, 617, 632, 936
TscAI	CASTG	4 cut(s)	196, 1191, 1230, 1506
TseFI	GTSAC	2 cut(s)	1346, 1497
TseI	GCWGC	6 cut(s)	420, 794, 896, 899, 908, 1202
Tsp45I	GTSAC	2 cut(s)	1346, 1497
TspDTI	ATGAA	8 cut(s)	315, 402, 905, 951, 993, 1097, 1392, 1470
TspGWI	ACGGA	3 cut(s)	365, 541, 782
TspMI	CCCGGG	1 cut(s)	38
TspRI	CASTG	4 cut(s)	196, 1191, 1230, 1506
VpaK11BI	GGWCC	1 cut(s)	340
XapI	RAATTY	3 cut(s)	625, 958, 1576
XceI	RCATGY	1 cut(s)	1091
XcmI	CCANNNNNNNNNTGG	1 cut(s)	413
XhoI	CTCGAG	1 cut(s)	344
XmaI	CCCGGG	1 cut(s)	38
XmiI	GTMKAC	1 cut(s)	186
XmnI	GAANNNNTTC	1 cut(s)	1236
XspI	CTAG	3 cut(s)	525, 903, 1367
Zsp2I	ATGCAT	1 cut(s)	976

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.