Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0012903

Physical Location & Seq

Genomic Coordinates Forward (+)

8076998 .. 8077893

Gene Structure 896 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0103000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGTTCAGCGCCAACCATCAGCTTCCCCAGAAGTCTCTCCCAATGAAACAAGAGGATGACAAGTTCTTCTCTAGGGTTCTGTCCAAGGAAAGCTCCATGGCCAACCCATCTTTCAAGGTCTACTATGGAGGACTACCTGCTAATGTACCATTCATGTGGGAATCTCAGCCTGGCACTCCTAAACACAAATTCAGTGAAGAAACACTTCCTCCTCTTACTCCTCCACCTTCTTATTATTCCAACAATCCCAATAAAAAACCATTCAAGAAGCACTCAAGATCCAATCTTTTACGTGTTTTGTTCCTAAAGATAAGCCTCAAGAAAAACCATCTCCCACAATCTCCATCATCCACATCGTCTTCCTCGTCTTCGTTGTTTTCCAAGTCAGATTTGTCAATCCGCGTGCCTATGAATACCTGTGGGAGCAGGTTTTCAAGCCCGAGTTCGTCTTTTGATTTTAGCGGAGATTATGAAGAGGAGGGCGTAGTTGGCTCGCCTACTTCAACATTGTGCTTTGGATTTCGTAGGGTGACTAGTGGAGCCGACCGAAATTGTCACCGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006464 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0019538 GO:0031386 GO:0034641 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04212 map04212

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

188

Amino Acids

21.02

Weight (kDa)

9.68

Isoelectric Point (pI)

70.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42300
fragaria_vesca	FvH4_6g15950
prunus_persica	Prupe.6G102700_v2.0.a1 Prupe.6G102700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0469651
rosa_multiflora	Rmu_co8219234.1_g000001 Rmu_sc0006483.1_g000021 Rmu_sc0018944.1_g000005
rosa_roxburghii	Rroxscaffold_6G00411600
rosa_rugosa	Rorug03G0102900 Rorug03G0103000 Rorug05G0318000
rosa_samantha	Rh3AG152600 Rh3BG176400 Rh3CG167400 Rh3DG199200 Rh5DG411000
rosa_wichuraiana	Rw3G014390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	145, 417
AccI	GTMKAC	1 cut(s)	120
AccII	CGCG	1 cut(s)	402
AciI	CCGC	2 cut(s)	400, 462
AclWI	GGATC	1 cut(s)	273
AcoI	YGGCCR	1 cut(s)	99
AcsI	RAATTY	1 cut(s)	188
AfaI	GTAC	1 cut(s)	147
AflIII	ACRYGT	1 cut(s)	292
AgeI	ACCGGT	1 cut(s)	558
AgsI	TTSAA	4 cut(s)	115, 265, 435, 504
AhlI	ACTAGT	1 cut(s)	533
AjnI	CCWGG	1 cut(s)	169
AjuI	GAANNNNNNNTTGG	2 cut(s)	95, 127
AloI	GAACNNNNNNTCC	2 cut(s)	47, 79
AluBI	AGCT	2 cut(s)	22, 93
AluI	AGCT	2 cut(s)	22, 93
Alw26I	GTCTC	1 cut(s)	39
AlwI	GGATC	1 cut(s)	273
Ama87I	CYCGRG	1 cut(s)	439
AoxI	GGCC	1 cut(s)	99
ApoI	RAATTY	1 cut(s)	188
AsiGI	ACCGGT	1 cut(s)	558
Asp700I	GAANNNNTTC	1 cut(s)	204
AspLEI	GCGC	1 cut(s)	11
AsuHPI	GGTGA	2 cut(s)	541, 548
AvaI	CYCGRG	1 cut(s)	439
BalI	TGGCCA	1 cut(s)	101
BbsI	GAAGAC	2 cut(s)	351, 360
BccI	CCATC	4 cut(s)	24, 115, 336, 352
BciT130I	CCWGG	1 cut(s)	171
BcoDI	GTCTC	1 cut(s)	39
BcuI	ACTAGT	1 cut(s)	533
BfaI	CTAG	2 cut(s)	72, 534
BfoI	RGCGCY	1 cut(s)	12
BfuAI	ACCTGC	2 cut(s)	145, 417
Bme1390I	CCNGG	1 cut(s)	171
BmeT110I	CYCGRG	1 cut(s)	439
BmiI	GGNNCC	1 cut(s)	541
BmrFI	CCNGG	1 cut(s)	171
BpiI	GAAGAC	2 cut(s)	351, 360
BpuEI	CTTGAG	2 cut(s)	259, 302
BsaAI	YACGTR	1 cut(s)	293
BsaJI	CCNNGG	2 cut(s)	84, 96
BsaWI	WCCGGW	1 cut(s)	558
BsaXI	ACNNNNNCTCC	2 cut(s)	193, 223
Bse118I	RCCGGY	1 cut(s)	558
BseBI	CCWGG	1 cut(s)	171
BseDI	CCNNGG	2 cut(s)	84, 96
BseGI	GGATG	2 cut(s)	61, 347
BseMII	CTCAG	1 cut(s)	179
BseRI	GAGGAG	3 cut(s)	201, 210, 491
Bsh1236I	CGCG	1 cut(s)	402
Bsh1285I	CGRYCG	1 cut(s)	547
BshFI	GGCC	1 cut(s)	101
BshTI	ACCGGT	1 cut(s)	558
BsiEI	CGRYCG	1 cut(s)	547
BsiHKCI	CYCGRG	1 cut(s)	439
BsiSI	CCGG	1 cut(s)	559
BsmAI	GTCTC	1 cut(s)	39
BsnI	GGCC	1 cut(s)	101
BsoBI	CYCGRG	1 cut(s)	439
Bsp143I	GATC	1 cut(s)	278
Bsp19I	CCATGG	1 cut(s)	96
BspACI	CCGC	2 cut(s)	400, 462
BspANI	GGCC	1 cut(s)	101
BspCNI	CTCAG	1 cut(s)	178
BspFNI	CGCG	1 cut(s)	402
BspLI	GGNNCC	1 cut(s)	541
BspMI	ACCTGC	2 cut(s)	145, 417
BspPI	GGATC	1 cut(s)	273
BsrFI	RCCGGY	1 cut(s)	558
BssAI	RCCGGY	1 cut(s)	558
BssECI	CCNNGG	2 cut(s)	84, 96
BssMI	GATC	1 cut(s)	278
BssT1I	CCWWGG	2 cut(s)	84, 96
Bst2UI	CCWGG	1 cut(s)	171
Bst6I	CTCTTC	1 cut(s)	468
BstBAI	YACGTR	1 cut(s)	293
BstC8I	GCNNGC	2 cut(s)	404, 494
BstDEI	CTNAG	1 cut(s)	165
BstDSI	CCRYGG	1 cut(s)	96
BstF5I	GGATG	2 cut(s)	61, 347
BstFNI	CGCG	1 cut(s)	402
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	1 cut(s)	11
BstKTI	GATC	1 cut(s)	281
BstMAI	GTCTC	1 cut(s)	39
BstMBI	GATC	1 cut(s)	278
BstMCI	CGRYCG	1 cut(s)	547
BstMWI	GCNNNNNNNGC	1 cut(s)	489
BstNI	CCWGG	1 cut(s)	171
BstSCI	CCNGG	1 cut(s)	169
BstUI	CGCG	1 cut(s)	402
BstV2I	GAAGAC	2 cut(s)	351, 360
BstX2I	RGATCY	1 cut(s)	278
BstXI	CCANNNNNNTGG	1 cut(s)	156
BstYI	RGATCY	1 cut(s)	278
BsuRI	GGCC	1 cut(s)	101
BtgI	CCRYGG	1 cut(s)	96
BtsCI	GGATG	2 cut(s)	61, 347
BtsIMutI	CAGTG	1 cut(s)	199
BveI	ACCTGC	2 cut(s)	145, 417
Cac8I	GCNNGC	2 cut(s)	404, 494
CfoI	GCGC	1 cut(s)	11
Cfr10I	RCCGGY	1 cut(s)	558
Csp6I	GTAC	1 cut(s)	146
CspAI	ACCGGT	1 cut(s)	558
CviAII	CATG	2 cut(s)	97, 154
CviJI	RGCY	8 cut(s)	22, 93, 101, 169, 315, 438, 492, 542
CviKI_1	RGCY	8 cut(s)	22, 93, 101, 169, 315, 438, 492, 542
CviQI	GTAC	1 cut(s)	146
DdeI	CTNAG	1 cut(s)	165
DpnI	GATC	1 cut(s)	280
DpnII	GATC	1 cut(s)	278
EaeI	YGGCCR	1 cut(s)	99
Eam1104I	CTCTTC	1 cut(s)	468
EarI	CTCTTC	1 cut(s)	468
Eco130I	CCWWGG	2 cut(s)	84, 96
Eco88I	CYCGRG	1 cut(s)	439
EcoRII	CCWGG	1 cut(s)	169
EcoT14I	CCWWGG	2 cut(s)	84, 96
ErhI	CCWWGG	2 cut(s)	84, 96
FaeI	CATG	2 cut(s)	100, 157
FaiI	YATR	5 cut(s)	98, 126, 155, 410, 471
FalI	AAGNNNNNCTT	2 cut(s)	189, 221
FatI	CATG	2 cut(s)	96, 153
FblI	GTMKAC	1 cut(s)	120
FokI	GGATG	2 cut(s)	68, 334
FspBI	CTAG	2 cut(s)	72, 534
GlaI	GCGC	1 cut(s)	10
HaeII	RGCGCY	1 cut(s)	12
HaeIII	GGCC	1 cut(s)	101
HapII	CCGG	1 cut(s)	559
HhaI	GCGC	1 cut(s)	11
Hin1II	CATG	2 cut(s)	100, 157
Hin6I	GCGC	1 cut(s)	9
HinP1I	GCGC	1 cut(s)	9
HinfI	GANTC	1 cut(s)	161
HpaII	CCGG	1 cut(s)	559
HphI	GGTGA	2 cut(s)	541, 548
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	1 cut(s)	388
Hpy188III	TCNNGA	3 cut(s)	265, 276, 319
Hpy8I	GTNNAC	1 cut(s)	121
HpyAV	CCTTC	1 cut(s)	237
HpyCH4IV	ACGT	1 cut(s)	292
HpyF10VI	GCNNNNNNNGC	1 cut(s)	489
HpyF3I	CTNAG	1 cut(s)	165
HpySE526I	ACGT	1 cut(s)	292
Hsp92II	CATG	2 cut(s)	100, 157
HspAI	GCGC	1 cut(s)	9
Kzo9I	GATC	1 cut(s)	278
LmnI	GCTCC	3 cut(s)	98, 423, 539
LpnPI	CCDG	6 cut(s)	41, 150, 156, 183, 412, 430
MaeI	CTAG	2 cut(s)	72, 534
MaeII	ACGT	1 cut(s)	292
MaeIII	GTNAC	2 cut(s)	529, 554
MalI	GATC	1 cut(s)	280
MboI	GATC	1 cut(s)	278
MboII	GAAGA	5 cut(s)	58, 209, 351, 360, 485
MflI	RGATCY	1 cut(s)	278
MlsI	TGGCCA	1 cut(s)	101
MluCI	AATT	2 cut(s)	188, 550
MluNI	TGGCCA	1 cut(s)	101
MmeI	TCCRAC	1 cut(s)	264
MnlI	CCTC	9 cut(s)	46, 122, 219, 222, 231, 326, 373, 469, 472
Mox20I	TGGCCA	1 cut(s)	101
MroXI	GAANNNNTTC	1 cut(s)	204
MscI	TGGCCA	1 cut(s)	101
MslI	CAYNNNNRTG	1 cut(s)	154
Msp20I	TGGCCA	1 cut(s)	101
MspI	CCGG	1 cut(s)	559
MspR9I	CCNGG	1 cut(s)	171
MvaI	CCWGG	1 cut(s)	171
MvnI	CGCG	1 cut(s)	402
MwoI	GCNNNNNNNGC	1 cut(s)	489
NcoI	CCATGG	1 cut(s)	96
NdeII	GATC	1 cut(s)	278
NlaIII	CATG	2 cut(s)	100, 157
NlaIV	GGNNCC	1 cut(s)	541
NmuCI	GTSAC	2 cut(s)	529, 554
PcsI	WCGNNNNNNNCGW	1 cut(s)	362
PdmI	GAANNNNTTC	1 cut(s)	204
PfeI	GAWTC	1 cut(s)	161
PinAI	ACCGGT	1 cut(s)	558
Ppu21I	YACGTR	1 cut(s)	293
Psp6I	CCWGG	1 cut(s)	169
PspGI	CCWGG	1 cut(s)	169
PspN4I	GGNNCC	1 cut(s)	541
PsuI	RGATCY	1 cut(s)	278
RsaI	GTAC	1 cut(s)	147
RsaNI	GTAC	1 cut(s)	146
RseI	CAYNNNNRTG	1 cut(s)	154
Sau3AI	GATC	1 cut(s)	278
ScrFI	CCNGG	1 cut(s)	171
SetI	ASST	8 cut(s)	24, 95, 120, 139, 229, 295, 419, 431
SmiMI	CAYNNNNRTG	1 cut(s)	154
SmlI	CTYRAG	2 cut(s)	274, 317
SmoI	CTYRAG	2 cut(s)	274, 317
SpeI	ACTAGT	1 cut(s)	533
Sse9I	AATT	2 cut(s)	188, 550
SsiI	CCGC	2 cut(s)	400, 462
SspMI	CTAG	2 cut(s)	72, 534
StyD4I	CCNGG	1 cut(s)	169
StyI	CCWWGG	2 cut(s)	84, 96
TaiI	ACGT	1 cut(s)	295
TaqII	GACCGA	1 cut(s)	561
TasI	AATT	2 cut(s)	188, 550
TfiI	GAWTC	1 cut(s)	161
TscAI	CASTG	1 cut(s)	199
TseFI	GTSAC	2 cut(s)	529, 554
Tsp45I	GTSAC	2 cut(s)	529, 554
TspDTI	ATGAA	4 cut(s)	59, 142, 425, 486
TspRI	CASTG	1 cut(s)	199
XapI	RAATTY	1 cut(s)	188
XmiI	GTMKAC	1 cut(s)	120
XmnI	GAANNNNTTC	1 cut(s)	204
XspI	CTAG	2 cut(s)	72, 534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.