Rmu_sc0006952.1_g000017

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006952.1
OG0020485
Physical Location & Seq
Reverse (-)
78356 .. 80112
1757 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 810 bp
atgctggcgggcatcacgatcccacctgtgatatccagagctagttgttcccaatggagcaaagtccaattttttcaggttactcatcctaaaagagaacaagaaaaaggtcatggagtagtgaggtcgcggcgtctcaggggtagtggtttcgcaggggtcggggtgtcgctgggtcacggtgtcgcgaggttgcgaggtcttgttgtcgcggggttgcaggcgagcgagcatgagagcaggggcagcgagactaacctggtagggttagcgttgagttgcgacgcgagggctactgcggggatgctgcagagctactgcggggcctctgtggggatgctgcgggccgtaattgctagggtagaaggctacgattttagggtttcaaggttagagcttcctgccggcgactccatctactccatcaagaatatcctctccttccacgtcttgctcaactacttcggcgccaagaagctccaccaaatcaccaatggtacctcccttgccgttgccatgttccaggtcaccggctctaccttcggcttcgtcaacatcacctacctcaagggcggaaaggtatcatgtctgcccacgaatgtaatgtcttcaccgagacgctcttggctaatctcgatgcgtccaagaccttcgacgaagccgtcgacggcgggcagacccggctactactctttcaagggcttcctgcataaacacaagaacctctcggcgcctgaaaaagctgcattgctggagtaccacgccgttccggtgtaccagtccatgttgatgttgaagtgccaagattag

Protein Analysis

269

Amino Acids

29.22

Weight (kDa)

10.19

Isoelectric Point (pI)

48.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020485)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0315121 RchiOBHm_Chr2g0084231
rosa_multiflora Rmu_sc0006952.1_g000017
rosa_roxburghii Rroxscaffold_2G00115580 Rroxscaffold_3G00230230
rosa_samantha Rh6AG517800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 661
Acc65I GGTACC 1 cut(s) 497
AccB1I GGYRCC 3 cut(s) 467, 497, 730
AccI GTMKAC 1 cut(s) 665
AccII CGCG 4 cut(s) 130, 188, 212, 287
AciI CCGC 8 cut(s) 8, 130, 212, 299, 321, 343, 573, 671
AclWI GGATC 1 cut(s) 13
AcyI GRCGYC 3 cut(s) 133, 468, 731
AfaI GTAC 3 cut(s) 499, 758, 776
AfiI CCNNNNNNNGG 1 cut(s) 333
AgsI TTSAA 3 cut(s) 387, 697, 796
AjiI CACGTC 1 cut(s) 448
AjnI CCWGG 2 cut(s) 258, 522
AluBI AGCT 5 cut(s) 41, 315, 397, 478, 743
AluI AGCT 5 cut(s) 41, 315, 397, 478, 743
Alw26I GTCTC 3 cut(s) 140, 245, 610
AlwI GGATC 1 cut(s) 13
AoxI GGCC 2 cut(s) 324, 345
ApeKI GCWGC 4 cut(s) 246, 307, 340, 743
ArsI GACNNNNNNTTYG 2 cut(s) 590, 622
Asp718I GGTACC 1 cut(s) 497
AspLEI GCGC 2 cut(s) 470, 733
AspS9I GGNCC 2 cut(s) 324, 345
AsuC2I CCSGG 1 cut(s) 681
AsuHPI GGTGA 4 cut(s) 481, 520, 550, 603
BanI GGYRCC 3 cut(s) 467, 497, 730
BbsI GAAGAC 1 cut(s) 600
BbvI GCAGC 4 cut(s) 258, 294, 327, 730
BccI CCATC 2 cut(s) 422, 431
BceAI ACGGC 5 cut(s) 332, 494, 646, 684, 749
BciT130I CCWGG 2 cut(s) 260, 524
BcnI CCSGG 1 cut(s) 681
BcoDI GTCTC 3 cut(s) 140, 245, 610
BfaI CTAG 2 cut(s) 42, 357
BfmI CTRYAG 1 cut(s) 308
BfoI RGCGCY 2 cut(s) 471, 734
BisI GCNGC 5 cut(s) 131, 247, 308, 341, 744
BlsI GCNGC 5 cut(s) 132, 248, 309, 342, 745
Bme1390I CCNGG 3 cut(s) 260, 524, 681
BmgBI CACGTC 1 cut(s) 448
BmgT120I GGNCC 2 cut(s) 324, 345
BmiI GGNNCC 4 cut(s) 325, 469, 499, 732
BmrFI CCNGG 3 cut(s) 260, 524, 681
BmsI GCATC 4 cut(s) 21, 294, 327, 627
BpiI GAAGAC 1 cut(s) 600
BpmI CTGGAG 1 cut(s) 773
BpuEI CTTGAG 1 cut(s) 551
BpuMI CCSGG 1 cut(s) 681
BsaHI GRCGYC 3 cut(s) 133, 468, 731
BsaWI WCCGGW 1 cut(s) 769
Bsc4I CCNNNNNNNGG 1 cut(s) 333
Bse118I RCCGGY 2 cut(s) 404, 530
Bse1I ACTGG 1 cut(s) 778
Bse3DI GCAATG 1 cut(s) 746
BseBI CCWGG 2 cut(s) 260, 524
BseGI GGATG 3 cut(s) 85, 309, 342
BseLI CCNNNNNNNGG 1 cut(s) 333
BseMI GCAATG 1 cut(s) 746
BseMII CTCAG 1 cut(s) 151
BseNI ACTGG 1 cut(s) 778
BseXI GCAGC 4 cut(s) 258, 294, 327, 730
BseYI CCCAGC 1 cut(s) 172
Bsh1236I CGCG 4 cut(s) 130, 188, 212, 287
BshFI GGCC 2 cut(s) 326, 347
BshNI GGYRCC 3 cut(s) 467, 497, 730
BsiSI CCGG 4 cut(s) 405, 531, 681, 770
BslI CCNNNNNNNGG 1 cut(s) 333
BsmAI GTCTC 3 cut(s) 140, 245, 610
BsmBI CGTCTC 2 cut(s) 140, 610
BsnI GGCC 2 cut(s) 326, 347
Bsp143I GATC 1 cut(s) 18
Bsp68I TCGCGA 1 cut(s) 188
BspACI CCGC 8 cut(s) 8, 130, 212, 299, 321, 343, 573, 671
BspANI GGCC 2 cut(s) 326, 347
BspCNI CTCAG 1 cut(s) 150
BspFNI CGCG 4 cut(s) 130, 188, 212, 287
BspLI GGNNCC 4 cut(s) 325, 469, 499, 732
BspMAI CTGCAG 1 cut(s) 312
BspPI GGATC 1 cut(s) 13
BspT107I GGYRCC 3 cut(s) 467, 497, 730
BsrDI GCAATG 1 cut(s) 746
BsrFI RCCGGY 2 cut(s) 404, 530
BsrI ACTGG 1 cut(s) 778
BssAI RCCGGY 2 cut(s) 404, 530
BssMI GATC 1 cut(s) 18
BssNI GRCGYC 3 cut(s) 133, 468, 731
Bst2UI CCWGG 2 cut(s) 260, 524
Bst4CI ACNGT 1 cut(s) 182
BstACI GRCGYC 3 cut(s) 133, 468, 731
BstC8I GCNNGC 8 cut(s) 6, 10, 222, 226, 230, 345, 406, 673
BstDEI CTNAG 1 cut(s) 137
BstEII GGTNACC 1 cut(s) 526
BstF5I GGATG 3 cut(s) 85, 309, 342
BstFNI CGCG 4 cut(s) 130, 188, 212, 287
BstH2I RGCGCY 2 cut(s) 471, 734
BstHHI GCGC 2 cut(s) 470, 733
BstKTI GATC 1 cut(s) 21
BstMAI GTCTC 3 cut(s) 140, 245, 610
BstMBI GATC 1 cut(s) 18
BstMWI GCNNNNNNNGC 3 cut(s) 246, 353, 681
BstNI CCWGG 2 cut(s) 260, 524
BstPI GGTNACC 1 cut(s) 526
BstSCI CCNGG 3 cut(s) 258, 522, 679
BstSFI CTRYAG 1 cut(s) 308
BstUI CGCG 4 cut(s) 130, 188, 212, 287
BstV1I GCAGC 4 cut(s) 258, 294, 327, 730
BstV2I GAAGAC 1 cut(s) 600
BsuRI GGCC 2 cut(s) 326, 347
BtrI CACGTC 1 cut(s) 448
BtsCI GGATG 3 cut(s) 85, 309, 342
BtuMI TCGCGA 1 cut(s) 188
Cac8I GCNNGC 8 cut(s) 6, 10, 222, 226, 230, 345, 406, 673
CfoI GCGC 2 cut(s) 470, 733
Cfr10I RCCGGY 2 cut(s) 404, 530
Cfr13I GGNCC 2 cut(s) 324, 345
CseI GACGC 4 cut(s) 122, 293, 627, 629
CsiI ACCWGGT 1 cut(s) 258
Csp6I GTAC 3 cut(s) 498, 757, 775
CviAII CATG 5 cut(s) 113, 233, 517, 585, 784
CviQI GTAC 3 cut(s) 498, 757, 775
DdeI CTNAG 1 cut(s) 137
DinI GGCGCC 2 cut(s) 469, 732
DpnI GATC 1 cut(s) 20
DpnII GATC 1 cut(s) 18
DrdI GACNNNNNNGTC 1 cut(s) 661
DseDI GACNNNNNNGTC 1 cut(s) 661
EciI GGCGGA 1 cut(s) 588
Eco32I GATATC 1 cut(s) 33
Eco91I GGTNACC 1 cut(s) 526
EcoO109I RGGNCCY 1 cut(s) 324
EcoO65I GGTNACC 1 cut(s) 526
EcoRII CCWGG 2 cut(s) 258, 522
EcoRV GATATC 1 cut(s) 33
EgeI GGCGCC 2 cut(s) 469, 732
EheI GGCGCC 2 cut(s) 469, 732
Esp3I CGTCTC 2 cut(s) 140, 610
FaeI CATG 5 cut(s) 116, 236, 520, 588, 787
FaiI YATR 6 cut(s) 114, 234, 518, 586, 711, 785
FatI CATG 5 cut(s) 112, 232, 516, 584, 783
FauI CCCGC 5 cut(s) 205, 292, 314, 336, 664
FblI GTMKAC 1 cut(s) 665
Fnu4HI GCNGC 5 cut(s) 131, 247, 308, 341, 744
FokI GGATG 3 cut(s) 72, 316, 349
Fsp4HI GCNGC 5 cut(s) 131, 247, 308, 341, 744
FspBI CTAG 2 cut(s) 42, 357
GlaI GCGC 2 cut(s) 469, 732
GluI GCNGC 5 cut(s) 131, 247, 308, 341, 744
GsaI CCCAGC 1 cut(s) 176
GsuI CTGGAG 1 cut(s) 773
HaeII RGCGCY 2 cut(s) 471, 734
HaeIII GGCC 2 cut(s) 326, 347
HapII CCGG 4 cut(s) 405, 531, 681, 770
HgaI GACGC 4 cut(s) 122, 293, 627, 629
HhaI GCGC 2 cut(s) 470, 733
Hin1I GRCGYC 3 cut(s) 133, 468, 731
Hin1II CATG 5 cut(s) 116, 236, 520, 588, 787
Hin6I GCGC 2 cut(s) 468, 731
HinP1I GCGC 2 cut(s) 468, 731
HincII GTYRAC 2 cut(s) 553, 666
HindII GTYRAC 2 cut(s) 553, 666
HinfI GANTC 1 cut(s) 410
HpaII CCGG 4 cut(s) 405, 531, 681, 770
HphI GGTGA 4 cut(s) 481, 520, 550, 603
Hpy166II GTNNAC 3 cut(s) 553, 666, 775
Hpy188III TCNNGA 5 cut(s) 16, 36, 187, 427, 634
Hpy8I GTNNAC 3 cut(s) 553, 666, 775
Hpy99I CGWCG 4 cut(s) 287, 658, 667, 670
HpyAV CCTTC 4 cut(s) 359, 451, 550, 660
HpyCH4III ACNGT 1 cut(s) 182
HpyCH4IV ACGT 1 cut(s) 447
HpyCH4V TGCA 4 cut(s) 220, 310, 709, 746
HpyF10VI GCNNNNNNNGC 3 cut(s) 246, 353, 681
HpyF3I CTNAG 1 cut(s) 137
HpySE526I ACGT 1 cut(s) 447
Hsp92I GRCGYC 3 cut(s) 133, 468, 731
Hsp92II CATG 5 cut(s) 116, 236, 520, 588, 787
HspAI GCGC 2 cut(s) 468, 731
KasI GGCGCC 2 cut(s) 467, 730
KpnI GGTACC 1 cut(s) 501
KroI GCCGGC 1 cut(s) 404
KroNI GCCGGC 1 cut(s) 406
Kzo9I GATC 1 cut(s) 18
LmnI GCTCC 2 cut(s) 57, 483
Lsp1109I GCAGC 4 cut(s) 258, 294, 327, 730
LweI GCATC 4 cut(s) 21, 294, 327, 627
MabI ACCWGGT 1 cut(s) 258
MaeI CTAG 2 cut(s) 42, 357
MaeII ACGT 1 cut(s) 447
MaeIII GTNAC 3 cut(s) 79, 176, 526
MalI GATC 1 cut(s) 20
MboI GATC 1 cut(s) 18
MboII GAAGA 1 cut(s) 600
MluCI AATT 2 cut(s) 68, 351
Mly113I GGCGCC 2 cut(s) 468, 731
MlyI GAGTC 1 cut(s) 404
MnlI CCTC 9 cut(s) 117, 183, 191, 282, 337, 446, 511, 575, 734
MroNI GCCGGC 1 cut(s) 404
MslI CAYNNNNRTG 1 cut(s) 788
MspI CCGG 4 cut(s) 405, 531, 681, 770
MspR9I CCNGG 3 cut(s) 260, 524, 681
MvaI CCWGG 2 cut(s) 260, 524
MvnI CGCG 4 cut(s) 130, 188, 212, 287
MwoI GCNNNNNNNGC 3 cut(s) 246, 353, 681
NaeI GCCGGC 1 cut(s) 406
NarI GGCGCC 2 cut(s) 468, 731
NciI CCSGG 1 cut(s) 681
NdeII GATC 1 cut(s) 18
NgoMIV GCCGGC 1 cut(s) 404
NlaIII CATG 5 cut(s) 116, 236, 520, 588, 787
NlaIV GGNNCC 4 cut(s) 325, 469, 499, 732
NmeAIII GCCGAG 1 cut(s) 707
NmuCI GTSAC 2 cut(s) 176, 526
NruI TCGCGA 1 cut(s) 188
PcsI WCGNNNNNNNCGW 2 cut(s) 659, 662
PdiI GCCGGC 1 cut(s) 406
PkrI GCNGC 5 cut(s) 132, 248, 309, 342, 745
PleI GAGTC 1 cut(s) 404
PluTI GGCGCC 2 cut(s) 471, 734
PpsI GAGTC 1 cut(s) 404
Psp6I CCWGG 2 cut(s) 258, 522
PspEI GGTNACC 1 cut(s) 526
PspFI CCCAGC 1 cut(s) 172
PspGI CCWGG 2 cut(s) 258, 522
PspN4I GGNNCC 4 cut(s) 325, 469, 499, 732
PspPI GGNCC 2 cut(s) 324, 345
PstI CTGCAG 1 cut(s) 312
RruI TCGCGA 1 cut(s) 188
RsaI GTAC 3 cut(s) 499, 758, 776
RsaNI GTAC 3 cut(s) 498, 757, 775
RseI CAYNNNNRTG 1 cut(s) 788
SalI GTCGAC 1 cut(s) 664
SatI GCNGC 5 cut(s) 131, 247, 308, 341, 744
Sau3AI GATC 1 cut(s) 18
Sau96I GGNCC 2 cut(s) 324, 345
SchI GAGTC 1 cut(s) 404
ScrFI CCNGG 3 cut(s) 260, 524, 681
SexAI ACCWGGT 1 cut(s) 258
SfaNI GCATC 4 cut(s) 21, 294, 327, 627
SfcI CTRYAG 1 cut(s) 308
SfoI GGCGCC 2 cut(s) 469, 732
SgrDI CGTCGACG 1 cut(s) 664
SmiMI CAYNNNNRTG 1 cut(s) 788
SmlI CTYRAG 1 cut(s) 566
SmoI CTYRAG 1 cut(s) 566
Sse9I AATT 2 cut(s) 68, 351
SsiI CCGC 8 cut(s) 8, 130, 212, 299, 321, 343, 573, 671
SspDI GGCGCC 2 cut(s) 467, 730
SspMI CTAG 2 cut(s) 42, 357
StyD4I CCNGG 3 cut(s) 258, 522, 679
TaaI ACNGT 1 cut(s) 182
TaiI ACGT 1 cut(s) 450
TaqI TCGA 3 cut(s) 635, 653, 665
TasI AATT 2 cut(s) 68, 351
TauI GCSGC 1 cut(s) 133
TseFI GTSAC 2 cut(s) 176, 526
TseI GCWGC 4 cut(s) 246, 307, 340, 743
Tsp45I GTSAC 2 cut(s) 176, 526
XcmI CCANNNNNNNNNTGG 1 cut(s) 491
XmiI GTMKAC 1 cut(s) 665
XspI CTAG 2 cut(s) 42, 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.