Rmu_sc0007066.1_g000010

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007066.1
OG0021052
Physical Location & Seq
Reverse (-)
41016 .. 42109
1094 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007066.1_g000010.1.cds

Sequence Viewer

Length: 633 bp
atggcatccattaaagacattgcgtcttttgcggcctcgttcgctttggtcgaaaacgaggtcattgatctcgcacgaagaactggaggatcggaacaaggtcctacgggtggaccatggagattcaatcacgctcttgtggttttgcaaggatacgatgacattgcacctctgcagactgttgaaatgaactctcttttattttgggtgcacatcactaacatctcacccttgtttgaagaccatgatacaatcagggatattgcctctgtggctggtaatttcattgaacttgatcataagctttttgaaaacatgggaaaggttagggttaggccagggtttcagggcatccaaactcctattctaccttatgttagtagatcactatttggccctcttgagcattctagacacaaacctgttgtactgcgtgagaagattgtgtcctccaaggccaatgcaaagtcaatggcattaatcccggccaccaaaccagtgaccaatgactccccttctgcacaaggtgctgcaactatacctgcttctaaactgccatttgagaaggtaagtgaatgtggaatgactctgccattgagggaactattgtaccaattatgtatgagtacttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283

Protein Analysis

210

Amino Acids

23.01

Weight (kDa)

6.59

Isoelectric Point (pI)

49.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021052)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g33131
rosa_multiflora Rmu_sc0000903.1_g000032 Rmu_sc0001211.1_g000125 Rmu_sc0003846.1_g000007 Rmu_sc0007066.1_g000010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 550
AciI CCGC 1 cut(s) 32
AclWI GGATC 1 cut(s) 97
AcoI YGGCCR 1 cut(s) 486
AdeI CACNNNGTG 1 cut(s) 527
AfaI GTAC 3 cut(s) 429, 611, 628
AfiI CCNNNNNNNGG 1 cut(s) 110
AgsI TTSAA 5 cut(s) 127, 185, 239, 290, 311
AhdI GACNNNNNGTC 1 cut(s) 22
AjnI CCWGG 1 cut(s) 337
AjuI GAANNNNNNNTTGG 2 cut(s) 348, 380
AluBI AGCT 1 cut(s) 304
AluI AGCT 1 cut(s) 304
Alw21I GWGCWC 1 cut(s) 213
Alw44I GTGCAC 1 cut(s) 209
AlwI GGATC 1 cut(s) 97
AoxI GGCC 5 cut(s) 33, 335, 394, 456, 486
ApaLI GTGCAC 1 cut(s) 209
ApeKI GCWGC 1 cut(s) 530
ArsI GACNNNNNNTTYG 2 cut(s) 45, 77
AseI ATTAAT 1 cut(s) 479
AspS9I GGNCC 3 cut(s) 101, 113, 395
AsuC2I CCSGG 1 cut(s) 485
AsuHPI GGTGA 1 cut(s) 219
AvaII GGWCC 2 cut(s) 101, 113
BaeGI GKGCMC 1 cut(s) 213
BaeI ACNNNNGTAYC 2 cut(s) 593, 626
BbsI GAAGAC 1 cut(s) 246
Bbv12I GWGCWC 1 cut(s) 213
BbvI GCAGC 1 cut(s) 517
BcgI CGANNNNNNTGC 2 cut(s) 146, 180
BciT130I CCWGG 1 cut(s) 339
BciVI GTATCC 1 cut(s) 146
BclI TGATCA 1 cut(s) 295
BcnI CCSGG 1 cut(s) 485
BfaI CTAG 1 cut(s) 411
BfmI CTRYAG 1 cut(s) 173
BfuAI ACCTGC 1 cut(s) 550
BfuI GTATCC 1 cut(s) 146
BglI GCCNNNNNGGC 1 cut(s) 272
BisI GCNGC 2 cut(s) 33, 531
BlsI GCNGC 2 cut(s) 34, 532
BmcAI AGTACT 1 cut(s) 628
Bme1390I CCNGG 2 cut(s) 339, 485
Bme18I GGWCC 2 cut(s) 101, 113
BmeRI GACNNNNNGTC 1 cut(s) 22
BmgT120I GGNCC 3 cut(s) 101, 113, 395
BmrFI CCNGG 2 cut(s) 339, 485
BmsI GCATC 2 cut(s) 14, 360
BpiI GAAGAC 1 cut(s) 246
BpmI CTGGAG 1 cut(s) 105
BpuEI CTTGAG 1 cut(s) 422
BpuMI CCSGG 1 cut(s) 485
BsaJI CCNNGG 3 cut(s) 116, 338, 453
Bsc4I CCNNNNNNNGG 1 cut(s) 110
Bse1I ACTGG 2 cut(s) 88, 497
Bse3DI GCAATG 2 cut(s) 18, 162
BseBI CCWGG 1 cut(s) 339
BseDI CCNNGG 3 cut(s) 116, 338, 453
BseGI GGATG 2 cut(s) 5, 351
BseLI CCNNNNNNNGG 1 cut(s) 110
BseMI GCAATG 2 cut(s) 18, 162
BseNI ACTGG 2 cut(s) 88, 497
BseSI GKGCMC 1 cut(s) 213
BseXI GCAGC 1 cut(s) 517
BsgI GTGCAG 1 cut(s) 504
BshFI GGCC 5 cut(s) 35, 337, 396, 458, 488
BsiHKAI GWGCWC 1 cut(s) 213
BsiSI CCGG 1 cut(s) 485
BslI CCNNNNNNNGG 1 cut(s) 110
BsmI GAATGC 1 cut(s) 406
BsnI GGCC 5 cut(s) 35, 337, 396, 458, 488
Bsp1286I GDGCHC 1 cut(s) 213
Bsp143I GATC 4 cut(s) 67, 89, 295, 383
Bsp19I CCATGG 1 cut(s) 116
BspACI CCGC 1 cut(s) 32
BspANI GGCC 5 cut(s) 35, 337, 396, 458, 488
BspMAI CTGCAG 1 cut(s) 177
BspMI ACCTGC 1 cut(s) 550
BspPI GGATC 1 cut(s) 97
BsrDI GCAATG 2 cut(s) 18, 162
BsrI ACTGG 2 cut(s) 88, 497
BssECI CCNNGG 3 cut(s) 116, 338, 453
BssMI GATC 4 cut(s) 67, 89, 295, 383
BssT1I CCWWGG 2 cut(s) 116, 453
Bst2UI CCWGG 1 cut(s) 339
Bst4CI ACNGT 1 cut(s) 181
BstAPI GCANNNNNTGC 1 cut(s) 527
BstDSI CCRYGG 1 cut(s) 116
BstF5I GGATG 2 cut(s) 5, 351
BstKTI GATC 4 cut(s) 70, 92, 298, 386
BstMBI GATC 4 cut(s) 67, 89, 295, 383
BstMWI GCNNNNNNNGC 4 cut(s) 29, 41, 272, 527
BstNI CCWGG 1 cut(s) 339
BstSCI CCNGG 2 cut(s) 337, 483
BstSFI CTRYAG 1 cut(s) 173
BstSLI GKGCMC 1 cut(s) 213
BstV1I GCAGC 1 cut(s) 517
BstV2I GAAGAC 1 cut(s) 246
BsuI GTATCC 1 cut(s) 146
BsuRI GGCC 5 cut(s) 35, 337, 396, 458, 488
BtgI CCRYGG 1 cut(s) 116
BtsCI GGATG 2 cut(s) 5, 351
BtsIMutI CAGTG 1 cut(s) 504
BveI ACCTGC 1 cut(s) 550
Cfr13I GGNCC 3 cut(s) 101, 113, 395
CseI GACGC 1 cut(s) 12
Csp6I GTAC 3 cut(s) 428, 610, 627
CviAII CATG 3 cut(s) 117, 245, 316
CviJI RGCY 7 cut(s) 35, 275, 304, 337, 396, 458, 488
CviKI_1 RGCY 7 cut(s) 35, 275, 304, 337, 396, 458, 488
CviQI GTAC 3 cut(s) 428, 610, 627
DpnI GATC 4 cut(s) 69, 91, 297, 385
DpnII GATC 4 cut(s) 67, 89, 295, 383
DraIII CACNNNGTG 1 cut(s) 527
DriI GACNNNNNGTC 1 cut(s) 22
EaeI YGGCCR 1 cut(s) 486
Eam1105I GACNNNNNGTC 1 cut(s) 22
Eco130I CCWWGG 2 cut(s) 116, 453
Eco47I GGWCC 2 cut(s) 101, 113
EcoO109I RGGNCCY 1 cut(s) 101
EcoRII CCWGG 1 cut(s) 337
EcoT14I CCWWGG 2 cut(s) 116, 453
ErhI CCWWGG 2 cut(s) 116, 453
FaeI CATG 3 cut(s) 120, 248, 319
FaiI YATR 8 cut(s) 118, 246, 300, 317, 375, 539, 619, 623
FatI CATG 3 cut(s) 116, 244, 315
FbaI TGATCA 1 cut(s) 295
Fnu4HI GCNGC 2 cut(s) 33, 531
FokI GGATG 1 cut(s) 338
Fsp4HI GCNGC 2 cut(s) 33, 531
FspBI CTAG 1 cut(s) 411
GluI GCNGC 2 cut(s) 33, 531
GsuI CTGGAG 1 cut(s) 105
HaeIII GGCC 5 cut(s) 35, 337, 396, 458, 488
HapII CCGG 1 cut(s) 485
HgaI GACGC 1 cut(s) 12
Hin1II CATG 3 cut(s) 120, 248, 319
HindIII AAGCTT 1 cut(s) 302
HinfI GANTC 3 cut(s) 123, 509, 586
HpaII CCGG 1 cut(s) 485
HphI GGTGA 1 cut(s) 219
Hpy166II GTNNAC 2 cut(s) 113, 211
Hpy188I TCNGA 1 cut(s) 94
Hpy188III TCNNGA 2 cut(s) 401, 411
Hpy8I GTNNAC 2 cut(s) 113, 211
HpyAV CCTTC 2 cut(s) 525, 559
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4V TGCA 7 cut(s) 148, 167, 175, 211, 464, 521, 533
HpyF10VI GCNNNNNNNGC 4 cut(s) 29, 41, 272, 527
Hsp92II CATG 3 cut(s) 120, 248, 319
Ksp22I TGATCA 1 cut(s) 295
Kzo9I GATC 4 cut(s) 67, 89, 295, 383
Lsp1109I GCAGC 1 cut(s) 517
LweI GCATC 2 cut(s) 14, 360
MaeI CTAG 1 cut(s) 411
MaeIII GTNAC 1 cut(s) 499
MalI GATC 4 cut(s) 69, 91, 297, 385
MboI GATC 4 cut(s) 67, 89, 295, 383
MboII GAAGA 3 cut(s) 90, 251, 451
MhlI GDGCHC 1 cut(s) 213
MluCI AATT 2 cut(s) 280, 614
MlyI GAGTC 2 cut(s) 503, 580
MnlI CCTC 8 cut(s) 46, 52, 80, 180, 277, 408, 460, 591
MseI TTAA 2 cut(s) 12, 479
MspI CCGG 1 cut(s) 485
MspR9I CCNGG 2 cut(s) 339, 485
Mva1269I GAATGC 1 cut(s) 406
MvaI CCWGG 1 cut(s) 339
MwoI GCNNNNNNNGC 4 cut(s) 29, 41, 272, 527
NciI CCSGG 1 cut(s) 485
NcoI CCATGG 1 cut(s) 116
NdeII GATC 4 cut(s) 67, 89, 295, 383
NlaIII CATG 3 cut(s) 120, 248, 319
NmuCI GTSAC 1 cut(s) 499
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PctI GAATGC 1 cut(s) 406
PfeI GAWTC 1 cut(s) 123
PkrI GCNGC 2 cut(s) 34, 532
PleI GAGTC 2 cut(s) 503, 580
PpsI GAGTC 2 cut(s) 503, 580
PpuMI RGGWCCY 1 cut(s) 101
PshBI ATTAAT 1 cut(s) 479
Psp5II RGGWCCY 1 cut(s) 101
Psp6I CCWGG 1 cut(s) 337
PspGI CCWGG 1 cut(s) 337
PspPI GGNCC 3 cut(s) 101, 113, 395
PspPPI RGGWCCY 1 cut(s) 101
PstI CTGCAG 1 cut(s) 177
RsaI GTAC 3 cut(s) 429, 611, 628
RsaNI GTAC 3 cut(s) 428, 610, 627
SaqAI TTAA 2 cut(s) 12, 479
SatI GCNGC 2 cut(s) 33, 531
Sau3AI GATC 4 cut(s) 67, 89, 295, 383
Sau96I GGNCC 3 cut(s) 101, 113, 395
ScaI AGTACT 1 cut(s) 628
SchI GAGTC 2 cut(s) 503, 580
ScrFI CCNGG 2 cut(s) 339, 485
SduI GDGCHC 1 cut(s) 213
SfaNI GCATC 2 cut(s) 14, 360
SfcI CTRYAG 1 cut(s) 173
SinI GGWCC 2 cut(s) 101, 113
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
Sse9I AATT 2 cut(s) 280, 614
SsiI CCGC 1 cut(s) 32
SspMI CTAG 1 cut(s) 411
StyD4I CCNGG 2 cut(s) 337, 483
StyI CCWWGG 2 cut(s) 116, 453
TaaI ACNGT 1 cut(s) 181
TaqI TCGA 1 cut(s) 51
TasI AATT 2 cut(s) 280, 614
TatI WGTACW 2 cut(s) 427, 626
TauI GCSGC 1 cut(s) 35
TfiI GAWTC 1 cut(s) 123
Tru1I TTAA 2 cut(s) 12, 479
Tru9I TTAA 2 cut(s) 12, 479
TscAI CASTG 1 cut(s) 504
TseFI GTSAC 1 cut(s) 499
TseI GCWGC 1 cut(s) 530
Tsp45I GTSAC 1 cut(s) 499
TspDTI ATGAA 2 cut(s) 203, 274
TspRI CASTG 1 cut(s) 504
VneI GTGCAC 1 cut(s) 209
VpaK11BI GGWCC 2 cut(s) 101, 113
VspI ATTAAT 1 cut(s) 479
XbaI TCTAGA 1 cut(s) 410
XspI CTAG 1 cut(s) 411
ZrmI AGTACT 1 cut(s) 628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.