Rmu_sc0007127.1_g000006

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007127.1
OG0021675
Physical Location & Seq
Forward (+)
17646 .. 18377
732 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007127.1_g000006.1.cds

Sequence Viewer

Length: 321 bp
ctgtggggctctccttgggtctgtgaggaagcccaagagcatgtcgagctcacctcccactccaacttcgctgaatccaccgaggctgttctcaacctctctacttgcggcaagccaggccgatccaaaaccgaaagtgacctgcacaccacaagaactaggcacacggagtttgttgataagactgcggatgcagcaaaaccgataagtttggaggttccaaaggtaactgcttcagagtcggaagatgttgctgcaacgagccagaccgaaggtacgtgttcgcttagttacttccatttggatgacgaatctttatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PUB UBA

Protein Analysis

106

Amino Acids

11.57

Weight (kDa)

4.66

Isoelectric Point (pI)

37.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021675)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0007127.1_g000006
rosa_samantha Rh1CG245200 Rh7AG272200 Rh7CG291600
rosa_wichuraiana Rw1G023150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 150
AciI CCGC 2 cut(s) 108, 188
AclWI GGATC 1 cut(s) 117
AcuI CTGAAG 1 cut(s) 219
AfaI GTAC 1 cut(s) 277
AflIII ACRYGT 1 cut(s) 278
AjnI CCWGG 1 cut(s) 115
AluBI AGCT 1 cut(s) 49
AluI AGCT 1 cut(s) 49
Alw21I GWGCWC 1 cut(s) 51
AlwI GGATC 1 cut(s) 117
AoxI GGCC 1 cut(s) 118
ApeKI GCWGC 2 cut(s) 194, 254
AsuHPI GGTGA 1 cut(s) 43
BanII GRGCYC 2 cut(s) 11, 51
Bbv12I GWGCWC 1 cut(s) 51
BbvI GCAGC 2 cut(s) 206, 241
BciT130I CCWGG 1 cut(s) 117
BfaI CTAG 1 cut(s) 159
BfuAI ACCTGC 1 cut(s) 150
BisI GCNGC 3 cut(s) 109, 195, 255
BlsI GCNGC 3 cut(s) 110, 196, 256
Bme1390I CCNGG 1 cut(s) 117
BmiI GGNNCC 1 cut(s) 219
BmrFI CCNGG 1 cut(s) 117
BmsI GCATC 1 cut(s) 181
BplI GAGNNNNNCTC 2 cut(s) 38, 70
BsaAI YACGTR 1 cut(s) 279
BsaJI CCNNGG 2 cut(s) 14, 81
BseBI CCWGG 1 cut(s) 117
BseDI CCNNGG 2 cut(s) 14, 81
BseGI GGATG 2 cut(s) 196, 310
BseXI GCAGC 2 cut(s) 206, 241
BsgI GTGCAG 1 cut(s) 128
BshFI GGCC 1 cut(s) 120
BsiHKAI GWGCWC 1 cut(s) 51
BsnI GGCC 1 cut(s) 120
Bsp1286I GDGCHC 2 cut(s) 11, 51
Bsp143I GATC 1 cut(s) 122
BspACI CCGC 2 cut(s) 108, 188
BspANI GGCC 1 cut(s) 120
BspLI GGNNCC 1 cut(s) 219
BspMI ACCTGC 1 cut(s) 150
BspPI GGATC 1 cut(s) 117
BssECI CCNNGG 2 cut(s) 14, 81
BssMI GATC 1 cut(s) 122
BssT1I CCWWGG 1 cut(s) 14
Bst2UI CCWGG 1 cut(s) 117
BstBAI YACGTR 1 cut(s) 279
BstC8I GCNNGC 1 cut(s) 113
BstDEI CTNAG 1 cut(s) 287
BstF5I GGATG 2 cut(s) 196, 310
BstKTI GATC 1 cut(s) 125
BstMBI GATC 1 cut(s) 122
BstMWI GCNNNNNNNGC 3 cut(s) 46, 117, 194
BstNI CCWGG 1 cut(s) 117
BstNSI RCATGY 1 cut(s) 44
BstSCI CCNGG 1 cut(s) 115
BstV1I GCAGC 2 cut(s) 206, 241
BsuRI GGCC 1 cut(s) 120
BtsCI GGATG 2 cut(s) 196, 310
BveI ACCTGC 1 cut(s) 150
Cac8I GCNNGC 1 cut(s) 113
Csp6I GTAC 1 cut(s) 276
CviAII CATG 1 cut(s) 41
CviJI RGCY 7 cut(s) 9, 32, 49, 86, 115, 120, 264
CviKI_1 RGCY 7 cut(s) 9, 32, 49, 86, 115, 120, 264
CviQI GTAC 1 cut(s) 276
DdeI CTNAG 1 cut(s) 287
DpnI GATC 1 cut(s) 124
DpnII GATC 1 cut(s) 122
Ecl136II GAGCTC 1 cut(s) 49
Eco130I CCWWGG 1 cut(s) 14
Eco24I GRGCYC 2 cut(s) 11, 51
Eco53kI GAGCTC 1 cut(s) 49
Eco57I CTGAAG 1 cut(s) 219
EcoICRI GAGCTC 1 cut(s) 49
EcoRII CCWGG 1 cut(s) 115
EcoT14I CCWWGG 1 cut(s) 14
EcoT38I GRGCYC 2 cut(s) 11, 51
ErhI CCWWGG 1 cut(s) 14
FaeI CATG 1 cut(s) 44
FaiI YATR 2 cut(s) 42, 319
FatI CATG 1 cut(s) 40
Fnu4HI GCNGC 3 cut(s) 109, 195, 255
FokI GGATG 2 cut(s) 203, 317
FriOI GRGCYC 2 cut(s) 11, 51
Fsp4HI GCNGC 3 cut(s) 109, 195, 255
FspBI CTAG 1 cut(s) 159
GluI GCNGC 3 cut(s) 109, 195, 255
HaeIII GGCC 1 cut(s) 120
Hin1II CATG 1 cut(s) 44
HinfI GANTC 3 cut(s) 74, 239, 311
HphI GGTGA 1 cut(s) 43
Hpy188I TCNGA 2 cut(s) 238, 244
HpyAV CCTTC 1 cut(s) 266
HpyCH4IV ACGT 1 cut(s) 278
HpyCH4V TGCA 3 cut(s) 145, 194, 257
HpyF10VI GCNNNNNNNGC 3 cut(s) 46, 117, 194
HpyF3I CTNAG 1 cut(s) 287
HpySE526I ACGT 1 cut(s) 278
Hsp92II CATG 1 cut(s) 44
Kzo9I GATC 1 cut(s) 122
LpnPI CCDG 4 cut(s) 102, 129, 155, 278
Lsp1109I GCAGC 2 cut(s) 206, 241
LweI GCATC 1 cut(s) 181
MaeI CTAG 1 cut(s) 159
MaeII ACGT 1 cut(s) 278
MaeIII GTNAC 3 cut(s) 137, 226, 290
MalI GATC 1 cut(s) 124
MboI GATC 1 cut(s) 122
MboII GAAGA 1 cut(s) 257
MhlI GDGCHC 2 cut(s) 11, 51
MlyI GAGTC 1 cut(s) 248
MmeI TCCRAC 2 cut(s) 87, 222
MnlI CCTC 5 cut(s) 19, 64, 76, 107, 208
MslI CAYNNNNRTG 1 cut(s) 303
MspR9I CCNGG 1 cut(s) 117
MvaI CCWGG 1 cut(s) 117
MwoI GCNNNNNNNGC 3 cut(s) 46, 117, 194
NdeII GATC 1 cut(s) 122
NlaIII CATG 1 cut(s) 44
NlaIV GGNNCC 1 cut(s) 219
NmuCI GTSAC 1 cut(s) 137
NspI RCATGY 1 cut(s) 44
PfeI GAWTC 2 cut(s) 74, 311
PkrI GCNGC 3 cut(s) 110, 196, 256
PleI GAGTC 1 cut(s) 247
PpsI GAGTC 1 cut(s) 247
Ppu21I YACGTR 1 cut(s) 279
Psp124BI GAGCTC 1 cut(s) 51
Psp6I CCWGG 1 cut(s) 115
PspGI CCWGG 1 cut(s) 115
PspN4I GGNNCC 1 cut(s) 219
RsaI GTAC 1 cut(s) 277
RsaNI GTAC 1 cut(s) 276
RseI CAYNNNNRTG 1 cut(s) 303
SacI GAGCTC 1 cut(s) 51
SatI GCNGC 3 cut(s) 109, 195, 255
Sau3AI GATC 1 cut(s) 122
SchI GAGTC 1 cut(s) 248
ScrFI CCNGG 1 cut(s) 117
SduI GDGCHC 2 cut(s) 11, 51
SetI ASST 8 cut(s) 51, 56, 99, 144, 219, 228, 277, 281
SfaNI GCATC 1 cut(s) 181
SmiMI CAYNNNNRTG 1 cut(s) 303
SsiI CCGC 2 cut(s) 108, 188
SspMI CTAG 1 cut(s) 159
SstI GAGCTC 1 cut(s) 51
StyD4I CCNGG 1 cut(s) 115
StyI CCWWGG 1 cut(s) 14
TaiI ACGT 1 cut(s) 281
TaqI TCGA 1 cut(s) 45
TaqII GACCGA 1 cut(s) 284
TauI GCSGC 1 cut(s) 111
TfiI GAWTC 2 cut(s) 74, 311
TseFI GTSAC 1 cut(s) 137
TseI GCWGC 2 cut(s) 194, 254
Tsp45I GTSAC 1 cut(s) 137
TspGWI ACGGA 1 cut(s) 182
XceI RCATGY 1 cut(s) 44
XspI CTAG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.