Rh1CG245200

UBX domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0021675
Physical Location & Seq
Forward (+)
50605335 .. 50608558
3224 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG245200.1

Sequence Viewer

Length: 429 bp
ATGGCGGGCGTCTCTCTCAAGTGCGGGGACTGTGGGGCTTTCCTCGGGTCTGTTGAGGAAGCCCAAGAGAATGCCGAGCTCACCTCCCACTCCAACTTCGCTGAGTCCACCGAGGCTGTTCTCAACCTCTCTACTTGCGGCAAGCCATGCCAATCCAAAACCGAAAGTGACCTGCACACCAAAAGAACTAGGCACACGGAGTTTGTTGATAAGACTGCGGATGCAGCAAAACTGATAAGTTTGGAGGTTCCAAAGGTGACTGCTTCAGAGTCGGAAGATGTTGCTGCAACTAGCCAGACCGAAGTAAATTCATCGATCCAAAAAATTCTGGCATTTTACTTCACTGATCAAACCCCCCACTATACTCTCGATCATTCTAGTGGCAGTCAGTCACTGTTACACTTGACCCTCTTCTTTGCCCTCGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PUB UBA

Protein Analysis

142

Amino Acids

15.3

Weight (kDa)

4.97

Isoelectric Point (pI)

40.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_OTU1_C PF24560 3 - 35 1.8e-07 Ubiquitin thioesterase OTU1, C-terminal C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021675)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0007127.1_g000006
rosa_samantha Rh1CG245200 Rh7AG272200 Rh7CG291600
rosa_wichuraiana Rw1G023150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 180
AciI CCGC 4 cut(s) 5, 24, 138, 218
AclWI GGATC 1 cut(s) 310
AcsI RAATTY 2 cut(s) 307, 324
AcuI CTGAAG 1 cut(s) 249
AcyI GRCGYC 1 cut(s) 9
AluBI AGCT 1 cut(s) 79
AluI AGCT 1 cut(s) 79
Alw21I GWGCWC 1 cut(s) 81
Alw26I GTCTC 1 cut(s) 16
AlwI GGATC 1 cut(s) 310
AlwNI CAGNNNCTG 1 cut(s) 394
Ama87I CYCGRG 1 cut(s) 44
ApeKI GCWGC 2 cut(s) 224, 284
ApoI RAATTY 2 cut(s) 307, 324
AsuHPI GGTGA 2 cut(s) 73, 268
AvaI CYCGRG 1 cut(s) 44
BanII GRGCYC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 81
BbvI GCAGC 2 cut(s) 236, 271
BclI TGATCA 1 cut(s) 346
BcoDI GTCTC 1 cut(s) 16
BfaI CTAG 4 cut(s) 189, 291, 378, 427
BfuAI ACCTGC 1 cut(s) 180
BisI GCNGC 3 cut(s) 139, 225, 285
BlsI GCNGC 3 cut(s) 140, 226, 286
BmeT110I CYCGRG 1 cut(s) 44
BmiI GGNNCC 1 cut(s) 249
BmsI GCATC 1 cut(s) 211
BplI GAGNNNNNCTC 2 cut(s) 68, 100
Bsa29I ATCGAT 1 cut(s) 314
BsaHI GRCGYC 1 cut(s) 9
BsaJI CCNNGG 2 cut(s) 43, 111
BseCI ATCGAT 1 cut(s) 314
BseDI CCNNGG 2 cut(s) 43, 111
BseGI GGATG 1 cut(s) 226
BseMII CTCAG 1 cut(s) 93
BseXI GCAGC 2 cut(s) 236, 271
BsgI GTGCAG 1 cut(s) 158
BshVI ATCGAT 1 cut(s) 314
BsiHKAI GWGCWC 1 cut(s) 81
BsiHKCI CYCGRG 1 cut(s) 44
BslFI GGGAC 1 cut(s) 41
BsmAI GTCTC 1 cut(s) 16
BsmBI CGTCTC 1 cut(s) 16
BsmFI GGGAC 1 cut(s) 41
BsmI GAATGC 1 cut(s) 76
BsoBI CYCGRG 1 cut(s) 44
Bsp1286I GDGCHC 1 cut(s) 81
Bsp143I GATC 3 cut(s) 315, 346, 370
BspACI CCGC 4 cut(s) 5, 24, 138, 218
BspCNI CTCAG 1 cut(s) 94
BspDI ATCGAT 1 cut(s) 314
BspLI GGNNCC 1 cut(s) 249
BspMI ACCTGC 1 cut(s) 180
BspPI GGATC 1 cut(s) 310
BssECI CCNNGG 2 cut(s) 43, 111
BssMI GATC 3 cut(s) 315, 346, 370
BssNI GRCGYC 1 cut(s) 9
Bst4CI ACNGT 2 cut(s) 32, 396
Bst6I CTCTTC 1 cut(s) 416
BstACI GRCGYC 1 cut(s) 9
BstAPI GCANNNNNTGC 1 cut(s) 147
BstC8I GCNNGC 2 cut(s) 7, 143
BstDEI CTNAG 1 cut(s) 102
BstF5I GGATG 1 cut(s) 226
BstKTI GATC 3 cut(s) 318, 349, 373
BstMAI GTCTC 1 cut(s) 16
BstMBI GATC 3 cut(s) 315, 346, 370
BstMWI GCNNNNNNNGC 2 cut(s) 147, 224
BstV1I GCAGC 2 cut(s) 236, 271
Bsu15I ATCGAT 1 cut(s) 314
BsuTUI ATCGAT 1 cut(s) 314
BtsCI GGATG 1 cut(s) 226
BtsIMutI CAGTG 2 cut(s) 342, 392
BveI ACCTGC 1 cut(s) 180
Cac8I GCNNGC 2 cut(s) 7, 143
CaiI CAGNNNCTG 1 cut(s) 394
ClaI ATCGAT 1 cut(s) 314
CviAII CATG 1 cut(s) 147
CviJI RGCY 6 cut(s) 38, 62, 79, 116, 145, 294
CviKI_1 RGCY 6 cut(s) 38, 62, 79, 116, 145, 294
DdeI CTNAG 1 cut(s) 102
DpnI GATC 3 cut(s) 317, 348, 372
DpnII GATC 3 cut(s) 315, 346, 370
Eam1104I CTCTTC 1 cut(s) 416
EarI CTCTTC 1 cut(s) 416
Ecl136II GAGCTC 1 cut(s) 79
Eco24I GRGCYC 1 cut(s) 81
Eco53kI GAGCTC 1 cut(s) 79
Eco57I CTGAAG 1 cut(s) 249
Eco88I CYCGRG 1 cut(s) 44
EcoICRI GAGCTC 1 cut(s) 79
EcoT38I GRGCYC 1 cut(s) 81
Esp3I CGTCTC 1 cut(s) 16
FaeI CATG 1 cut(s) 150
FaiI YATR 2 cut(s) 148, 363
FaqI GGGAC 1 cut(s) 41
FatI CATG 1 cut(s) 146
FauI CCCGC 1 cut(s) 17
FbaI TGATCA 1 cut(s) 346
Fnu4HI GCNGC 3 cut(s) 139, 225, 285
FokI GGATG 1 cut(s) 233
FriOI GRGCYC 1 cut(s) 81
Fsp4HI GCNGC 3 cut(s) 139, 225, 285
FspBI CTAG 4 cut(s) 189, 291, 378, 427
GluI GCNGC 3 cut(s) 139, 225, 285
Hin1I GRCGYC 1 cut(s) 9
Hin1II CATG 1 cut(s) 150
HinfI GANTC 2 cut(s) 104, 269
HphI GGTGA 2 cut(s) 73, 268
Hpy166II GTNNAC 1 cut(s) 108
Hpy188I TCNGA 2 cut(s) 268, 274
Hpy188III TCNNGA 1 cut(s) 368
Hpy8I GTNNAC 1 cut(s) 108
HpyCH4III ACNGT 2 cut(s) 32, 396
HpyCH4V TGCA 3 cut(s) 175, 224, 287
HpyF10VI GCNNNNNNNGC 2 cut(s) 147, 224
HpyF3I CTNAG 1 cut(s) 102
Hsp92I GRCGYC 1 cut(s) 9
Hsp92II CATG 1 cut(s) 150
Ksp22I TGATCA 1 cut(s) 346
Kzo9I GATC 3 cut(s) 315, 346, 370
LpnPI CCDG 3 cut(s) 185, 308, 314
Lsp1109I GCAGC 2 cut(s) 236, 271
LweI GCATC 1 cut(s) 211
MaeI CTAG 4 cut(s) 189, 291, 378, 427
MaeIII GTNAC 4 cut(s) 167, 256, 390, 396
MalI GATC 3 cut(s) 317, 348, 372
MboI GATC 3 cut(s) 315, 346, 370
MboII GAAGA 2 cut(s) 287, 403
MhlI GDGCHC 1 cut(s) 81
MluCI AATT 2 cut(s) 307, 324
MlyI GAGTC 2 cut(s) 113, 278
MmeI TCCRAC 2 cut(s) 117, 252
MnlI CCTC 7 cut(s) 49, 53, 94, 106, 137, 238, 419
MslI CAYNNNNRTG 1 cut(s) 378
Mva1269I GAATGC 1 cut(s) 76
MwoI GCNNNNNNNGC 2 cut(s) 147, 224
NdeII GATC 3 cut(s) 315, 346, 370
NlaIII CATG 1 cut(s) 150
NlaIV GGNNCC 1 cut(s) 249
NmeAIII GCCGAG 1 cut(s) 100
NmuCI GTSAC 3 cut(s) 167, 256, 390
PctI GAATGC 1 cut(s) 76
PkrI GCNGC 3 cut(s) 140, 226, 286
PleI GAGTC 2 cut(s) 112, 277
PpsI GAGTC 2 cut(s) 112, 277
Psp124BI GAGCTC 1 cut(s) 81
PspN4I GGNNCC 1 cut(s) 249
PstNI CAGNNNCTG 1 cut(s) 394
RseI CAYNNNNRTG 1 cut(s) 378
SacI GAGCTC 1 cut(s) 81
SatI GCNGC 3 cut(s) 139, 225, 285
Sau3AI GATC 3 cut(s) 315, 346, 370
SchI GAGTC 2 cut(s) 113, 278
SduI GDGCHC 1 cut(s) 81
SetI ASST 6 cut(s) 81, 86, 129, 174, 249, 258
SfaNI GCATC 1 cut(s) 211
SmiMI CAYNNNNRTG 1 cut(s) 378
SmlI CTYRAG 1 cut(s) 17
SmoI CTYRAG 1 cut(s) 17
Sse9I AATT 2 cut(s) 307, 324
SsiI CCGC 4 cut(s) 5, 24, 138, 218
SspMI CTAG 4 cut(s) 189, 291, 378, 427
SstI GAGCTC 1 cut(s) 81
TaaI ACNGT 2 cut(s) 32, 396
TaqI TCGA 2 cut(s) 314, 369
TaqII GACCGA 1 cut(s) 314
TasI AATT 2 cut(s) 307, 324
TauI GCSGC 1 cut(s) 141
TscAI CASTG 2 cut(s) 349, 399
TseFI GTSAC 3 cut(s) 167, 256, 390
TseI GCWGC 2 cut(s) 224, 284
Tsp45I GTSAC 3 cut(s) 167, 256, 390
TspDTI ATGAA 1 cut(s) 300
TspGWI ACGGA 1 cut(s) 212
TspRI CASTG 2 cut(s) 349, 399
XapI RAATTY 2 cut(s) 307, 324
XspI CTAG 4 cut(s) 189, 291, 378, 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.