Rw1G023150

UBX domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0021675
Physical Location & Seq
Forward (+)
48861893 .. 48863614
1722 bp
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UTR
Exon/CDS
Intron
Rw1G023150.1

Sequence Viewer

Length: 432 bp
ATGGCGGGCGTCTCTCTCAAGTGCGGGGACTGTGGGGCTCTCCTCGGGTCTGTTGAGGAAGCCCAAGAGCATGCCGAGCTCACCTCCCACTCCAACTTCGCTGAGTCCACCGAGGCTGTTCTCAACCTTTTTACTTGCGGCAAGCCATGCCGATCCAAAACCAAAAGTGACCTGCACACCAAAAGAACTAGGCACACGGAGTTTGTTGATAAGACTGCGGATGCAACAAAACCGATAAGTTTGGAGGTTCCAAAGGTGACTGCTTCAAAGTCAGAAGATGTTGCTGCAACTAGCCAGACCGAAGGATCCCACTTGATCTGGCTATTGAAAATAACAAATGGCAACAACAAATTAGCCATTGTAAAGGCAGATCAAGGAAATAAGACTTTGAACAAAGCTAAGTCTGCAAGGAAAGACTTTGAACAAAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PUB UBA

Protein Analysis

143

Amino Acids

15.4

Weight (kDa)

8.34

Isoelectric Point (pI)

25.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_OTU1_C PF24560 3 - 35 5.1e-10 Ubiquitin thioesterase OTU1, C-terminal C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021675)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0007127.1_g000006
rosa_samantha Rh1CG245200 Rh7AG272200 Rh7CG291600
rosa_wichuraiana Rw1G023150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 180
AciI CCGC 4 cut(s) 5, 24, 138, 218
AclWI GGATC 3 cut(s) 147, 300, 313
AcyI GRCGYC 1 cut(s) 9
AgsI TTSAA 4 cut(s) 267, 328, 391, 422
AluBI AGCT 3 cut(s) 79, 398, 429
AluI AGCT 3 cut(s) 79, 398, 429
Alw21I GWGCWC 1 cut(s) 81
Alw26I GTCTC 1 cut(s) 16
AlwI GGATC 3 cut(s) 147, 300, 313
Ama87I CYCGRG 1 cut(s) 44
ApeKI GCWGC 1 cut(s) 284
AsuHPI GGTGA 2 cut(s) 73, 268
AvaI CYCGRG 1 cut(s) 44
BamHI GGATCC 1 cut(s) 305
BanII GRGCYC 2 cut(s) 40, 81
Bbv12I GWGCWC 1 cut(s) 81
BbvI GCAGC 1 cut(s) 271
BcoDI GTCTC 1 cut(s) 16
BfaI CTAG 2 cut(s) 189, 291
BfuAI ACCTGC 1 cut(s) 180
BisI GCNGC 2 cut(s) 139, 285
BlsI GCNGC 2 cut(s) 140, 286
BmeT110I CYCGRG 1 cut(s) 44
BmiI GGNNCC 2 cut(s) 249, 307
BmsI GCATC 1 cut(s) 211
BplI GAGNNNNNCTC 2 cut(s) 68, 100
BsaHI GRCGYC 1 cut(s) 9
BsaJI CCNNGG 2 cut(s) 43, 111
BseDI CCNNGG 2 cut(s) 43, 111
BseGI GGATG 1 cut(s) 226
BseMII CTCAG 1 cut(s) 93
BseRI GAGGAG 1 cut(s) 32
BseXI GCAGC 1 cut(s) 271
BsgI GTGCAG 1 cut(s) 158
BsiHKAI GWGCWC 1 cut(s) 81
BsiHKCI CYCGRG 1 cut(s) 44
BslFI GGGAC 1 cut(s) 41
BsmAI GTCTC 1 cut(s) 16
BsmBI CGTCTC 1 cut(s) 16
BsmFI GGGAC 1 cut(s) 41
BsoBI CYCGRG 1 cut(s) 44
Bsp1286I GDGCHC 2 cut(s) 40, 81
Bsp143I GATC 4 cut(s) 152, 305, 315, 370
BspACI CCGC 4 cut(s) 5, 24, 138, 218
BspCNI CTCAG 1 cut(s) 94
BspLI GGNNCC 2 cut(s) 249, 307
BspMI ACCTGC 1 cut(s) 180
BspPI GGATC 3 cut(s) 147, 300, 313
BssECI CCNNGG 2 cut(s) 43, 111
BssMI GATC 4 cut(s) 152, 305, 315, 370
BssNI GRCGYC 1 cut(s) 9
Bst4CI ACNGT 1 cut(s) 32
BstACI GRCGYC 1 cut(s) 9
BstAPI GCANNNNNTGC 1 cut(s) 147
BstC8I GCNNGC 3 cut(s) 7, 72, 143
BstDEI CTNAG 2 cut(s) 102, 399
BstF5I GGATG 1 cut(s) 226
BstKTI GATC 4 cut(s) 155, 308, 318, 373
BstMAI GTCTC 1 cut(s) 16
BstMBI GATC 4 cut(s) 152, 305, 315, 370
BstMWI GCNNNNNNNGC 3 cut(s) 76, 147, 404
BstNSI RCATGY 1 cut(s) 74
BstV1I GCAGC 1 cut(s) 271
BstX2I RGATCY 1 cut(s) 305
BstYI RGATCY 1 cut(s) 305
BtsCI GGATG 1 cut(s) 226
BveI ACCTGC 1 cut(s) 180
Cac8I GCNNGC 3 cut(s) 7, 72, 143
CviAII CATG 2 cut(s) 71, 147
DdeI CTNAG 2 cut(s) 102, 399
DpnI GATC 4 cut(s) 154, 307, 317, 372
DpnII GATC 4 cut(s) 152, 305, 315, 370
Ecl136II GAGCTC 1 cut(s) 79
Eco24I GRGCYC 2 cut(s) 40, 81
Eco53kI GAGCTC 1 cut(s) 79
Eco88I CYCGRG 1 cut(s) 44
EcoICRI GAGCTC 1 cut(s) 79
EcoT38I GRGCYC 2 cut(s) 40, 81
Esp3I CGTCTC 1 cut(s) 16
FaeI CATG 2 cut(s) 74, 150
FaiI YATR 2 cut(s) 72, 148
FaqI GGGAC 1 cut(s) 41
FatI CATG 2 cut(s) 70, 146
FauI CCCGC 1 cut(s) 17
Fnu4HI GCNGC 2 cut(s) 139, 285
FokI GGATG 1 cut(s) 233
FriOI GRGCYC 2 cut(s) 40, 81
Fsp4HI GCNGC 2 cut(s) 139, 285
FspBI CTAG 2 cut(s) 189, 291
GluI GCNGC 2 cut(s) 139, 285
Hin1I GRCGYC 1 cut(s) 9
Hin1II CATG 2 cut(s) 74, 150
HinfI GANTC 1 cut(s) 104
HphI GGTGA 2 cut(s) 73, 268
Hpy166II GTNNAC 1 cut(s) 108
Hpy188I TCNGA 1 cut(s) 274
Hpy8I GTNNAC 1 cut(s) 108
HpyAV CCTTC 1 cut(s) 296
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4V TGCA 4 cut(s) 175, 224, 287, 407
HpyF10VI GCNNNNNNNGC 3 cut(s) 76, 147, 404
HpyF3I CTNAG 2 cut(s) 102, 399
Hsp92I GRCGYC 1 cut(s) 9
Hsp92II CATG 2 cut(s) 74, 150
Kzo9I GATC 4 cut(s) 152, 305, 315, 370
LpnPI CCDG 3 cut(s) 185, 304, 308
Lsp1109I GCAGC 1 cut(s) 271
LweI GCATC 1 cut(s) 211
MaeI CTAG 2 cut(s) 189, 291
MaeIII GTNAC 2 cut(s) 167, 256
MalI GATC 4 cut(s) 154, 307, 317, 372
MboI GATC 4 cut(s) 152, 305, 315, 370
MboII GAAGA 1 cut(s) 287
MflI RGATCY 1 cut(s) 305
MhlI GDGCHC 2 cut(s) 40, 81
MluCI AATT 1 cut(s) 350
MlyI GAGTC 1 cut(s) 113
MmeI TCCRAC 1 cut(s) 117
MnlI CCTC 5 cut(s) 49, 53, 94, 106, 238
MwoI GCNNNNNNNGC 3 cut(s) 76, 147, 404
NdeII GATC 4 cut(s) 152, 305, 315, 370
NlaIII CATG 2 cut(s) 74, 150
NlaIV GGNNCC 2 cut(s) 249, 307
NmeAIII GCCGAG 1 cut(s) 100
NmuCI GTSAC 2 cut(s) 167, 256
NspI RCATGY 1 cut(s) 74
PaeI GCATGC 1 cut(s) 74
PkrI GCNGC 2 cut(s) 140, 286
PleI GAGTC 1 cut(s) 112
PpsI GAGTC 1 cut(s) 112
Psp124BI GAGCTC 1 cut(s) 81
PspN4I GGNNCC 2 cut(s) 249, 307
PsuI RGATCY 1 cut(s) 305
SacI GAGCTC 1 cut(s) 81
SatI GCNGC 2 cut(s) 139, 285
Sau3AI GATC 4 cut(s) 152, 305, 315, 370
SchI GAGTC 1 cut(s) 113
SduI GDGCHC 2 cut(s) 40, 81
SetI ASST 8 cut(s) 81, 86, 129, 174, 249, 258, 400, 431
SfaNI GCATC 1 cut(s) 211
SmlI CTYRAG 1 cut(s) 17
SmoI CTYRAG 1 cut(s) 17
SphI GCATGC 1 cut(s) 74
Sse9I AATT 1 cut(s) 350
SsiI CCGC 4 cut(s) 5, 24, 138, 218
SspMI CTAG 2 cut(s) 189, 291
SstI GAGCTC 1 cut(s) 81
TaaI ACNGT 1 cut(s) 32
TaqII GACCGA 1 cut(s) 314
TasI AATT 1 cut(s) 350
TauI GCSGC 1 cut(s) 141
TseFI GTSAC 2 cut(s) 167, 256
TseI GCWGC 1 cut(s) 284
Tsp45I GTSAC 2 cut(s) 167, 256
TspGWI ACGGA 1 cut(s) 212
XceI RCATGY 1 cut(s) 74
XspI CTAG 2 cut(s) 189, 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.