Rh7AG272200

UBX domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0021675
Physical Location & Seq
Forward (+)
28469190 .. 28470522
1333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG272200.1

Sequence Viewer

Length: 354 bp
ATGGCGGGCGTCTCTCTCAAGTGCGGGCACTGTGGGGCTCTCCTCGGGTCTGTTGAGGAAGCCCAAGAGCATGCCGAGCTCACCTCCCACTCCAACTTCGCTGAGTCCACCGAGGCTGTTCTCAACCTCTCTACTTGCGGCAAGCCATGTCGATCCAAAACCGAAAGTGACCTGCACACCAAAAGAACTAGGCACACTGAGTTTGTTGATAAGATTGCGGATGCAGCAAAACCGATAAGTTTGGAGGTTCCAAAGGTGACTGCTTCAGAGTCGGAAGATGTTGCTGCAACTAGCCAGACACGTGTCCGCTTTGTTACTTCCATTTGGATGATGAATCTTTATGATGACAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PUB UBA

Protein Analysis

117

Amino Acids

12.73

Weight (kDa)

5.47

Isoelectric Point (pI)

32.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_OTU1_C PF24560 3 - 35 1.5e-09 Ubiquitin thioesterase OTU1, C-terminal C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021675)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0007127.1_g000006
rosa_samantha Rh1CG245200 Rh7AG272200 Rh7CG291600
rosa_wichuraiana Rw1G023150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 180
AciI CCGC 5 cut(s) 5, 24, 138, 218, 307
AclWI GGATC 1 cut(s) 147
AcuI CTGAAG 1 cut(s) 249
AcvI CACGTG 1 cut(s) 302
AcyI GRCGYC 1 cut(s) 9
AflIII ACRYGT 2 cut(s) 299, 301
AluBI AGCT 1 cut(s) 79
AluI AGCT 1 cut(s) 79
Alw21I GWGCWC 1 cut(s) 81
Alw26I GTCTC 1 cut(s) 16
AlwI GGATC 1 cut(s) 147
Ama87I CYCGRG 1 cut(s) 44
ApeKI GCWGC 2 cut(s) 224, 284
AsuHPI GGTGA 2 cut(s) 73, 268
AvaI CYCGRG 1 cut(s) 44
BaeGI GKGCMC 1 cut(s) 30
BanII GRGCYC 2 cut(s) 40, 81
BbrPI CACGTG 1 cut(s) 302
Bbv12I GWGCWC 1 cut(s) 81
BbvI GCAGC 2 cut(s) 236, 271
BcoDI GTCTC 1 cut(s) 16
BfaI CTAG 2 cut(s) 189, 291
BfuAI ACCTGC 1 cut(s) 180
BisI GCNGC 3 cut(s) 139, 225, 285
BlsI GCNGC 3 cut(s) 140, 226, 286
BmeT110I CYCGRG 1 cut(s) 44
BmiI GGNNCC 1 cut(s) 249
BmsI GCATC 1 cut(s) 211
BoxI GACNNNNGTC 1 cut(s) 302
BplI GAGNNNNNCTC 2 cut(s) 68, 100
BsaAI YACGTR 1 cut(s) 302
BsaHI GRCGYC 1 cut(s) 9
BsaJI CCNNGG 2 cut(s) 43, 111
BseDI CCNNGG 2 cut(s) 43, 111
BseGI GGATG 2 cut(s) 226, 333
BseMII CTCAG 2 cut(s) 93, 189
BseRI GAGGAG 1 cut(s) 32
BseSI GKGCMC 1 cut(s) 30
BseXI GCAGC 2 cut(s) 236, 271
BsgI GTGCAG 1 cut(s) 158
BsiHKAI GWGCWC 1 cut(s) 81
BsiHKCI CYCGRG 1 cut(s) 44
BsmAI GTCTC 1 cut(s) 16
BsmBI CGTCTC 1 cut(s) 16
BsoBI CYCGRG 1 cut(s) 44
Bsp1286I GDGCHC 3 cut(s) 30, 40, 81
Bsp143I GATC 1 cut(s) 152
BspACI CCGC 5 cut(s) 5, 24, 138, 218, 307
BspCNI CTCAG 2 cut(s) 94, 190
BspLI GGNNCC 1 cut(s) 249
BspMI ACCTGC 1 cut(s) 180
BspPI GGATC 1 cut(s) 147
BssECI CCNNGG 2 cut(s) 43, 111
BssMI GATC 1 cut(s) 152
BssNI GRCGYC 1 cut(s) 9
Bst4CI ACNGT 1 cut(s) 32
BstACI GRCGYC 1 cut(s) 9
BstBAI YACGTR 1 cut(s) 302
BstC8I GCNNGC 4 cut(s) 7, 26, 72, 143
BstDEI CTNAG 2 cut(s) 102, 198
BstF5I GGATG 2 cut(s) 226, 333
BstKTI GATC 1 cut(s) 155
BstMAI GTCTC 1 cut(s) 16
BstMBI GATC 1 cut(s) 152
BstMWI GCNNNNNNNGC 2 cut(s) 76, 224
BstNSI RCATGY 1 cut(s) 74
BstPAI GACNNNNGTC 1 cut(s) 302
BstSLI GKGCMC 1 cut(s) 30
BstV1I GCAGC 2 cut(s) 236, 271
BtsCI GGATG 2 cut(s) 226, 333
BtsIMutI CAGTG 2 cut(s) 28, 195
BveI ACCTGC 1 cut(s) 180
Cac8I GCNNGC 4 cut(s) 7, 26, 72, 143
CviAII CATG 2 cut(s) 71, 147
CviJI RGCY 6 cut(s) 38, 62, 79, 116, 145, 294
CviKI_1 RGCY 6 cut(s) 38, 62, 79, 116, 145, 294
DdeI CTNAG 2 cut(s) 102, 198
DpnI GATC 1 cut(s) 154
DpnII GATC 1 cut(s) 152
Ecl136II GAGCTC 1 cut(s) 79
Eco24I GRGCYC 2 cut(s) 40, 81
Eco53kI GAGCTC 1 cut(s) 79
Eco57I CTGAAG 1 cut(s) 249
Eco72I CACGTG 1 cut(s) 302
Eco88I CYCGRG 1 cut(s) 44
EcoICRI GAGCTC 1 cut(s) 79
EcoT38I GRGCYC 2 cut(s) 40, 81
Esp3I CGTCTC 1 cut(s) 16
FaeI CATG 2 cut(s) 74, 150
FaiI YATR 3 cut(s) 72, 148, 342
FatI CATG 2 cut(s) 70, 146
FauI CCCGC 1 cut(s) 17
Fnu4HI GCNGC 3 cut(s) 139, 225, 285
FokI GGATG 2 cut(s) 233, 340
FriOI GRGCYC 2 cut(s) 40, 81
Fsp4HI GCNGC 3 cut(s) 139, 225, 285
FspBI CTAG 2 cut(s) 189, 291
GluI GCNGC 3 cut(s) 139, 225, 285
Hin1I GRCGYC 1 cut(s) 9
Hin1II CATG 2 cut(s) 74, 150
HinfI GANTC 3 cut(s) 104, 269, 334
HphI GGTGA 2 cut(s) 73, 268
Hpy166II GTNNAC 1 cut(s) 108
Hpy188I TCNGA 2 cut(s) 268, 274
Hpy8I GTNNAC 1 cut(s) 108
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4IV ACGT 1 cut(s) 301
HpyCH4V TGCA 3 cut(s) 175, 224, 287
HpyF10VI GCNNNNNNNGC 2 cut(s) 76, 224
HpyF3I CTNAG 2 cut(s) 102, 198
HpySE526I ACGT 1 cut(s) 301
Hsp92I GRCGYC 1 cut(s) 9
Hsp92II CATG 2 cut(s) 74, 150
Kzo9I GATC 1 cut(s) 152
LpnPI CCDG 2 cut(s) 185, 308
Lsp1109I GCAGC 2 cut(s) 236, 271
LweI GCATC 1 cut(s) 211
MaeI CTAG 2 cut(s) 189, 291
MaeII ACGT 1 cut(s) 301
MaeIII GTNAC 3 cut(s) 167, 256, 313
MalI GATC 1 cut(s) 154
MboI GATC 1 cut(s) 152
MboII GAAGA 1 cut(s) 287
MhlI GDGCHC 3 cut(s) 30, 40, 81
MluCI AATT 1 cut(s) 349
MlyI GAGTC 2 cut(s) 113, 278
MmeI TCCRAC 2 cut(s) 117, 252
MnlI CCTC 6 cut(s) 49, 53, 94, 106, 137, 238
MslI CAYNNNNRTG 1 cut(s) 326
MwoI GCNNNNNNNGC 2 cut(s) 76, 224
NdeII GATC 1 cut(s) 152
NlaIII CATG 2 cut(s) 74, 150
NlaIV GGNNCC 1 cut(s) 249
NmeAIII GCCGAG 1 cut(s) 100
NmuCI GTSAC 2 cut(s) 167, 256
NspI RCATGY 1 cut(s) 74
PaeI GCATGC 1 cut(s) 74
PfeI GAWTC 1 cut(s) 334
PkrI GCNGC 3 cut(s) 140, 226, 286
PleI GAGTC 2 cut(s) 112, 277
PmaCI CACGTG 1 cut(s) 302
PmlI CACGTG 1 cut(s) 302
PpsI GAGTC 2 cut(s) 112, 277
Ppu21I YACGTR 1 cut(s) 302
PshAI GACNNNNGTC 1 cut(s) 302
Psp124BI GAGCTC 1 cut(s) 81
PspCI CACGTG 1 cut(s) 302
PspN4I GGNNCC 1 cut(s) 249
RseI CAYNNNNRTG 1 cut(s) 326
SacI GAGCTC 1 cut(s) 81
SatI GCNGC 3 cut(s) 139, 225, 285
Sau3AI GATC 1 cut(s) 152
SchI GAGTC 2 cut(s) 113, 278
SduI GDGCHC 3 cut(s) 30, 40, 81
SetI ASST 7 cut(s) 81, 86, 129, 174, 249, 258, 304
SfaNI GCATC 1 cut(s) 211
SmiMI CAYNNNNRTG 1 cut(s) 326
SmlI CTYRAG 1 cut(s) 17
SmoI CTYRAG 1 cut(s) 17
SphI GCATGC 1 cut(s) 74
Sse9I AATT 1 cut(s) 349
SsiI CCGC 5 cut(s) 5, 24, 138, 218, 307
SspMI CTAG 2 cut(s) 189, 291
SstI GAGCTC 1 cut(s) 81
TaaI ACNGT 1 cut(s) 32
TaiI ACGT 1 cut(s) 304
TaqI TCGA 1 cut(s) 151
TasI AATT 1 cut(s) 349
TauI GCSGC 1 cut(s) 141
TfiI GAWTC 1 cut(s) 334
TscAI CASTG 2 cut(s) 35, 202
TseFI GTSAC 2 cut(s) 167, 256
TseI GCWGC 2 cut(s) 224, 284
Tsp45I GTSAC 2 cut(s) 167, 256
TspDTI ATGAA 1 cut(s) 347
TspRI CASTG 2 cut(s) 35, 202
XceI RCATGY 1 cut(s) 74
XspI CTAG 2 cut(s) 189, 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.