Rmu_sc0007363.1_g000001

Heavy metal-associated isoprenylated plant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007363.1
OG0019004
Physical Location & Seq
Forward (+)
1 .. 3289
3289 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 582 bp
agtgctcggacggtagcgtcgtcttcccatttggcgacgagaagcgagaaggctgcttttgataagattaatagtcgtctagatgcggaattcaatgaaggattggttggggaaagcaatgtggaagaatcggagattgatgcttctccggcgagttcacctgaggagaatgccatccttgatttgaccacagtagatgaagtcgaaagctcagcagtcacagttgacatcaaggtgaaaatggactgtgatggctgtgaaagaagagttaagaatgcagtctctcatatgaaaggtgcaaagcaagttgaagtgaacagaaagcaaagccgggtgacggtgacaggttatgtcgagccaaacaaggtgctaaagagggttaagaggaccggaaagagagctgagatttggccttacgttccatacaacgtcgttgcttatccttacgttgccggagcttatgacaagaaggcaccgtccggttacatcaggaacgtacctcaggcggtttctactgcacaggacgacgagtacacctccatgttcagtgatgagaatcctcatgcttgtgccatcatgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

193

Amino Acids

21.18

Weight (kDa)

5.51

Isoelectric Point (pI)

53.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 78 - 132 4.4e-13 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019004)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0398161
rosa_multiflora Rmu_sc0001648.1_g000015 Rmu_sc0007363.1_g000001 Rmu_sc0033997.1_g000001
rosa_roxburghii Rroxscaffold_7G00217570
rosa_samantha Rh2CG310100 Rh2DG349500 Rh6BG254800
rosa_wichuraiana Rw7G033100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 16
AccB1I GGYRCC 1 cut(s) 472
AciI CCGC 2 cut(s) 86, 506
AcsI RAATTY 1 cut(s) 89
AfaI GTAC 2 cut(s) 498, 533
AfiI CCNNNNNNNGG 1 cut(s) 337
AgsI TTSAA 2 cut(s) 94, 311
AjuI GAANNNNNNNTTGG 2 cut(s) 90, 122
AluBI AGCT 3 cut(s) 210, 401, 458
AluI AGCT 3 cut(s) 210, 401, 458
Alw21I GWGCWC 1 cut(s) 7
Alw26I GTCTC 1 cut(s) 286
AoxI GGCC 1 cut(s) 410
ApeKI GCWGC 1 cut(s) 53
ApoI RAATTY 1 cut(s) 89
AseI ATTAAT 1 cut(s) 69
AspS9I GGNCC 1 cut(s) 387
AsuC2I CCSGG 1 cut(s) 332
AsuHPI GGTGA 4 cut(s) 150, 247, 346, 352
AvaII GGWCC 1 cut(s) 387
AxyI CCTNAGG 2 cut(s) 162, 501
BanI GGYRCC 1 cut(s) 472
BbsI GAAGAC 1 cut(s) 15
Bbv12I GWGCWC 1 cut(s) 7
BbvI GCAGC 1 cut(s) 40
BccI CCATC 3 cut(s) 182, 245, 581
BcgI CGANNNNNNTGC 2 cut(s) 35, 69
BcnI CCSGG 1 cut(s) 332
BcoDI GTCTC 1 cut(s) 286
BfaI CTAG 1 cut(s) 80
BisI GCNGC 1 cut(s) 54
BlpI GCTNAGC 1 cut(s) 211
BlsI GCNGC 1 cut(s) 55
Bme1390I CCNGG 1 cut(s) 332
Bme18I GGWCC 1 cut(s) 387
BmgT120I GGNCC 1 cut(s) 387
BmiI GGNNCC 1 cut(s) 474
BmrFI CCNGG 1 cut(s) 332
BmsI GCATC 2 cut(s) 73, 130
BpiI GAAGAC 1 cut(s) 15
BplI GAGNNNNNCTC 2 cut(s) 521, 553
Bpu1102I GCTNAGC 1 cut(s) 211
BpuMI CCSGG 1 cut(s) 332
BsaBI GATNNNNATC 1 cut(s) 555
BsaWI WCCGGW 2 cut(s) 389, 479
Bsc4I CCNNNNNNNGG 1 cut(s) 337
Bse21I CCTNAGG 2 cut(s) 162, 501
Bse3DI GCAATG 1 cut(s) 124
Bse8I GATNNNNATC 1 cut(s) 555
BseGI GGATG 1 cut(s) 174
BseJI GATNNNNATC 1 cut(s) 555
BseLI CCNNNNNNNGG 1 cut(s) 337
BseMI GCAATG 1 cut(s) 124
BseMII CTCAG 4 cut(s) 153, 225, 393, 515
BseRI GAGGAG 1 cut(s) 179
BseXI GCAGC 1 cut(s) 40
BsgI GTGCAG 1 cut(s) 501
BshFI GGCC 1 cut(s) 412
BshNI GGYRCC 1 cut(s) 472
BsiHKAI GWGCWC 1 cut(s) 7
BsiSI CCGG 5 cut(s) 149, 331, 390, 453, 480
BslI CCNNNNNNNGG 1 cut(s) 337
BsmAI GTCTC 1 cut(s) 286
BsmI GAATGC 2 cut(s) 175, 280
BsnI GGCC 1 cut(s) 412
Bsp1286I GDGCHC 1 cut(s) 7
Bsp1720I GCTNAGC 1 cut(s) 211
BspACI CCGC 2 cut(s) 86, 506
BspANI GGCC 1 cut(s) 412
BspCNI CTCAG 4 cut(s) 154, 224, 394, 514
BspLI GGNNCC 1 cut(s) 474
BspT107I GGYRCC 1 cut(s) 472
BsrDI GCAATG 1 cut(s) 124
Bst4CI ACNGT 6 cut(s) 13, 193, 223, 248, 340, 477
Bst6I CTCTTC 1 cut(s) 259
BstDEI CTNAG 4 cut(s) 162, 211, 402, 501
BstF5I GGATG 1 cut(s) 174
BstMAI GTCTC 1 cut(s) 286
BstMWI GCNNNNNNNGC 1 cut(s) 149
BstSCI CCNGG 1 cut(s) 330
BstV1I GCAGC 1 cut(s) 40
BstV2I GAAGAC 1 cut(s) 15
Bsu36I CCTNAGG 2 cut(s) 162, 501
BsuRI GGCC 1 cut(s) 412
BtsCI GGATG 1 cut(s) 174
BtsIMutI CAGTG 1 cut(s) 553
Cfr13I GGNCC 1 cut(s) 387
CseI GACGC 1 cut(s) 6
Csp6I GTAC 2 cut(s) 497, 532
CviAII CATG 3 cut(s) 541, 563, 577
CviJI RGCY 8 cut(s) 53, 210, 255, 330, 358, 401, 412, 458
CviKI_1 RGCY 8 cut(s) 53, 210, 255, 330, 358, 401, 412, 458
CviQI GTAC 2 cut(s) 497, 532
DdeI CTNAG 4 cut(s) 162, 211, 402, 501
DrdI GACNNNNNNGTC 1 cut(s) 16
DseDI GACNNNNNNGTC 1 cut(s) 16
Eam1104I CTCTTC 1 cut(s) 259
EarI CTCTTC 1 cut(s) 259
Eco47I GGWCC 1 cut(s) 387
Eco81I CCTNAGG 2 cut(s) 162, 501
EcoRI GAATTC 1 cut(s) 89
FaeI CATG 3 cut(s) 544, 566, 580
FaiI YATR 8 cut(s) 288, 290, 351, 424, 462, 542, 564, 578
FatI CATG 3 cut(s) 540, 562, 576
FauNDI CATATG 1 cut(s) 288
Fnu4HI GCNGC 1 cut(s) 54
FokI GGATG 1 cut(s) 161
Fsp4HI GCNGC 1 cut(s) 54
FspBI CTAG 1 cut(s) 80
GluI GCNGC 1 cut(s) 54
HaeIII GGCC 1 cut(s) 412
HapII CCGG 5 cut(s) 149, 331, 390, 453, 480
HgaI GACGC 1 cut(s) 6
Hin1II CATG 3 cut(s) 544, 566, 580
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HinfI GANTC 2 cut(s) 128, 556
HpaII CCGG 5 cut(s) 149, 331, 390, 453, 480
HphI GGTGA 4 cut(s) 150, 247, 346, 352
Hpy166II GTNNAC 4 cut(s) 158, 226, 316, 534
Hpy188I TCNGA 2 cut(s) 9, 133
Hpy188III TCNNGA 2 cut(s) 80, 490
Hpy8I GTNNAC 4 cut(s) 158, 226, 316, 534
Hpy99I CGWCG 4 cut(s) 22, 40, 434, 530
HpyAV CCTTC 3 cut(s) 43, 92, 463
HpyCH4III ACNGT 6 cut(s) 13, 193, 223, 248, 340, 477
HpyCH4IV ACGT 4 cut(s) 417, 429, 447, 495
HpyCH4V TGCA 3 cut(s) 278, 299, 518
HpyF10VI GCNNNNNNNGC 1 cut(s) 149
HpyF3I CTNAG 4 cut(s) 162, 211, 402, 501
HpySE526I ACGT 4 cut(s) 417, 429, 447, 495
Hsp92II CATG 3 cut(s) 544, 566, 580
LmnI GCTCC 1 cut(s) 455
Lsp1109I GCAGC 1 cut(s) 40
LweI GCATC 2 cut(s) 73, 130
MaeI CTAG 1 cut(s) 80
MaeII ACGT 4 cut(s) 417, 429, 447, 495
MaeIII GTNAC 4 cut(s) 217, 334, 340, 482
MboII GAAGA 3 cut(s) 15, 137, 276
MhlI GDGCHC 1 cut(s) 7
MluCI AATT 1 cut(s) 89
MnlI CCTC 6 cut(s) 157, 369, 378, 510, 547, 570
MseI TTAA 3 cut(s) 69, 270, 381
MslI CAYNNNNRTG 3 cut(s) 233, 539, 567
MspI CCGG 5 cut(s) 149, 331, 390, 453, 480
MspR9I CCNGG 1 cut(s) 332
Mva1269I GAATGC 2 cut(s) 175, 280
MwoI GCNNNNNNNGC 1 cut(s) 149
NciI CCSGG 1 cut(s) 332
NdeI CATATG 1 cut(s) 288
NlaIII CATG 3 cut(s) 544, 566, 580
NlaIV GGNNCC 1 cut(s) 474
NmuCI GTSAC 3 cut(s) 217, 334, 340
PcsI WCGNNNNNNNCGW 1 cut(s) 17
PctI GAATGC 2 cut(s) 175, 280
PfeI GAWTC 2 cut(s) 128, 556
PkrI GCNGC 1 cut(s) 55
PshBI ATTAAT 1 cut(s) 69
PspN4I GGNNCC 1 cut(s) 474
PspPI GGNCC 1 cut(s) 387
RsaI GTAC 2 cut(s) 498, 533
RsaNI GTAC 2 cut(s) 497, 532
RseI CAYNNNNRTG 3 cut(s) 233, 539, 567
SaqAI TTAA 3 cut(s) 69, 270, 381
SatI GCNGC 1 cut(s) 54
Sau96I GGNCC 1 cut(s) 387
ScrFI CCNGG 1 cut(s) 332
SduI GDGCHC 1 cut(s) 7
SfaNI GCATC 2 cut(s) 73, 130
SinI GGWCC 1 cut(s) 387
SmiMI CAYNNNNRTG 3 cut(s) 233, 539, 567
Sse9I AATT 1 cut(s) 89
SsiI CCGC 2 cut(s) 86, 506
SspMI CTAG 1 cut(s) 80
StyD4I CCNGG 1 cut(s) 330
TaaI ACNGT 6 cut(s) 13, 193, 223, 248, 340, 477
TaiI ACGT 4 cut(s) 420, 432, 450, 498
TaqI TCGA 2 cut(s) 204, 354
TasI AATT 1 cut(s) 89
TatI WGTACW 1 cut(s) 531
TfiI GAWTC 2 cut(s) 128, 556
Tru1I TTAA 3 cut(s) 69, 270, 381
Tru9I TTAA 3 cut(s) 69, 270, 381
TscAI CASTG 1 cut(s) 553
TseFI GTSAC 3 cut(s) 217, 334, 340
TseI GCWGC 1 cut(s) 53
Tsp45I GTSAC 3 cut(s) 217, 334, 340
TspDTI ATGAA 3 cut(s) 111, 213, 305
TspRI CASTG 1 cut(s) 553
VpaK11BI GGWCC 1 cut(s) 387
VspI ATTAAT 1 cut(s) 69
XapI RAATTY 1 cut(s) 89
XbaI TCTAGA 1 cut(s) 79
XspI CTAG 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.