Rmu_sc0007908.1_g000003

RNA polymerase II CTD heptapeptide repeat kinase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007908.1
OG0020666
Physical Location & Seq
Reverse (-)
7680 .. 7910
231 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007908.1_g000003.1.cds

Sequence Viewer

Length: 231 bp
atggagaactatcagcgcgatggagaggtcgtcaaaggaagtaccagcattgtctacagagacatcaaccgtcgcactgggcaatgccatgtgattaaggagttctcaccggctagagtcgacactggtttgcgtgaaatttcttcacttcagcaattgggtagtgaccacttcgtaataaatctggtggagcatcagctttgcacattcaccaagggctctgcgggttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000128 GO:0000166 GO:0000228 GO:0000307 GO:0000785 GO:0000790 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008023 GO:0008024 GO:0008144 GO:0008150 GO:0008152 GO:0008353 GO:0009058 GO:0009059 GO:0009268 GO:0009405 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010570 GO:0010604 GO:0010628 GO:0010638 GO:0016070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0019908 GO:0030447 GO:0030554 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032553 GO:0032555 GO:0032559 GO:0032774 GO:0032784 GO:0032786 GO:0032806 GO:0032968 GO:0032991 GO:0033043 GO:0033044 GO:0034243 GO:0034641 GO:0034645 GO:0034654 GO:0035639 GO:0036094 GO:0036177 GO:0036211 GO:0040007 GO:0040008 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043900 GO:0043901 GO:0044182 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044419 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045893 GO:0045926 GO:0045927 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051569 GO:0051571 GO:0051704 GO:0051716 GO:0051726 GO:0060255 GO:0060256 GO:0060257 GO:0060258 GO:0061695 GO:0065007 GO:0070013 GO:0070693 GO:0070816 GO:0071214 GO:0071467 GO:0071619 GO:0071620 GO:0071704 GO:0080090 GO:0090033 GO:0090304 GO:0097159 GO:0097367 GO:0097472 GO:0097659 GO:0098630 GO:0098743 GO:0104004 GO:0140096 GO:1900428 GO:1900429 GO:1900430 GO:1900741 GO:1900742 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902275 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1903655 GO:1905269 GO:1990234 GO:2000112 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

76

Amino Acids

8.52

Weight (kDa)

6.82

Isoelectric Point (pI)

31.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020666)

Species Orthologous Gene IDs
rosa_laevigata RLG00000015697
rosa_multiflora Rmu_sc0007908.1_g000003 Rmu_sc0020315.1_g000005
rosa_roxburghii Rroxscaffold_2G00155290
rosa_samantha Rh2CG011300 Rh2DG012200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 54, 120
AccII CGCG 1 cut(s) 18
AciI CCGC 1 cut(s) 224
AcsI RAATTY 1 cut(s) 138
AcuI CTGAAG 1 cut(s) 134
AfaI GTAC 1 cut(s) 43
AluBI AGCT 1 cut(s) 199
AluI AGCT 1 cut(s) 199
Alw26I GTCTC 1 cut(s) 54
ApoI RAATTY 1 cut(s) 138
AspLEI GCGC 1 cut(s) 18
AsuHPI GGTGA 2 cut(s) 99, 202
BanII GRGCYC 1 cut(s) 221
BccI CCATC 1 cut(s) 14
BcoDI GTCTC 1 cut(s) 54
BfaI CTAG 1 cut(s) 114
BfmI CTRYAG 1 cut(s) 55
BmrI ACTGGG 1 cut(s) 87
BmsI GCATC 1 cut(s) 202
BmuI ACTGGG 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 213
BsaXI ACNNNNNCTCC 2 cut(s) 15, 45
Bse118I RCCGGY 1 cut(s) 109
Bse1I ACTGG 2 cut(s) 82, 130
Bse3DI GCAATG 1 cut(s) 89
BseDI CCNNGG 1 cut(s) 213
BseMI GCAATG 1 cut(s) 89
BseNI ACTGG 2 cut(s) 82, 130
Bsh1236I CGCG 1 cut(s) 18
BsiSI CCGG 1 cut(s) 110
BsmAI GTCTC 1 cut(s) 54
Bsp1286I GDGCHC 1 cut(s) 221
BspACI CCGC 1 cut(s) 224
BspFNI CGCG 1 cut(s) 18
BsrDI GCAATG 1 cut(s) 89
BsrFI RCCGGY 1 cut(s) 109
BsrI ACTGG 2 cut(s) 82, 130
BssAI RCCGGY 1 cut(s) 109
BssECI CCNNGG 1 cut(s) 213
BssT1I CCWWGG 1 cut(s) 213
Bst4CI ACNGT 1 cut(s) 71
BstFNI CGCG 1 cut(s) 18
BstHHI GCGC 1 cut(s) 18
BstMAI GTCTC 1 cut(s) 54
BstSFI CTRYAG 1 cut(s) 55
BstUI CGCG 1 cut(s) 18
BtgZI GCGATG 1 cut(s) 33
BtsIMutI CAGTG 2 cut(s) 75, 123
CfoI GCGC 1 cut(s) 18
Cfr10I RCCGGY 1 cut(s) 109
Csp6I GTAC 1 cut(s) 42
CviAII CATG 1 cut(s) 89
CviJI RGCY 3 cut(s) 113, 199, 219
CviKI_1 RGCY 3 cut(s) 113, 199, 219
CviQI GTAC 1 cut(s) 42
Eco130I CCWWGG 1 cut(s) 213
Eco24I GRGCYC 1 cut(s) 221
Eco57I CTGAAG 1 cut(s) 134
EcoT14I CCWWGG 1 cut(s) 213
EcoT38I GRGCYC 1 cut(s) 221
ErhI CCWWGG 1 cut(s) 213
FaeI CATG 1 cut(s) 92
FaiI YATR 1 cut(s) 90
FatI CATG 1 cut(s) 88
FauI CCCGC 1 cut(s) 217
FblI GTMKAC 2 cut(s) 54, 120
FriOI GRGCYC 1 cut(s) 221
FspBI CTAG 1 cut(s) 114
GlaI GCGC 1 cut(s) 17
HapII CCGG 1 cut(s) 110
HhaI GCGC 1 cut(s) 18
Hin1II CATG 1 cut(s) 92
Hin6I GCGC 1 cut(s) 16
HinP1I GCGC 1 cut(s) 16
HincII GTYRAC 1 cut(s) 121
HindII GTYRAC 1 cut(s) 121
HinfI GANTC 1 cut(s) 117
HpaII CCGG 1 cut(s) 110
HphI GGTGA 2 cut(s) 99, 202
Hpy166II GTNNAC 2 cut(s) 55, 121
Hpy8I GTNNAC 2 cut(s) 55, 121
Hpy99I CGWCG 1 cut(s) 75
HpyCH4III ACNGT 1 cut(s) 71
HpyCH4V TGCA 1 cut(s) 204
Hsp92II CATG 1 cut(s) 92
HspAI GCGC 1 cut(s) 16
LmnI GCTCC 1 cut(s) 190
LpnPI CCDG 5 cut(s) 58, 63, 111, 123, 170
LweI GCATC 1 cut(s) 202
MaeI CTAG 1 cut(s) 114
MaeIII GTNAC 1 cut(s) 164
MboII GAAGA 1 cut(s) 135
MfeI CAATTG 1 cut(s) 155
MhlI GDGCHC 1 cut(s) 221
MluCI AATT 2 cut(s) 138, 155
MlyI GAGTC 1 cut(s) 126
MnlI CCTC 1 cut(s) 19
MseI TTAA 1 cut(s) 96
MspI CCGG 1 cut(s) 110
MunI CAATTG 1 cut(s) 155
MvnI CGCG 1 cut(s) 18
NlaIII CATG 1 cut(s) 92
NmuCI GTSAC 1 cut(s) 164
PleI GAGTC 1 cut(s) 125
PpsI GAGTC 1 cut(s) 125
RsaI GTAC 1 cut(s) 43
RsaNI GTAC 1 cut(s) 42
SalI GTCGAC 1 cut(s) 119
SaqAI TTAA 1 cut(s) 96
SchI GAGTC 1 cut(s) 126
SduI GDGCHC 1 cut(s) 221
SetI ASST 2 cut(s) 30, 201
SfaNI GCATC 1 cut(s) 202
SfcI CTRYAG 1 cut(s) 55
Sse9I AATT 2 cut(s) 138, 155
SsiI CCGC 1 cut(s) 224
SspMI CTAG 1 cut(s) 114
StyI CCWWGG 1 cut(s) 213
TaaI ACNGT 1 cut(s) 71
TaqI TCGA 1 cut(s) 120
TasI AATT 2 cut(s) 138, 155
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TscAI CASTG 2 cut(s) 82, 130
TseFI GTSAC 1 cut(s) 164
Tsp45I GTSAC 1 cut(s) 164
TspRI CASTG 2 cut(s) 82, 130
XapI RAATTY 1 cut(s) 138
XmiI GTMKAC 2 cut(s) 54, 120
XspI CTAG 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.