Rh2CG011300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0020666
Physical Location & Seq
Forward (+)
920682 .. 920951
270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG011300.1

Sequence Viewer

Length: 270 bp
ATGGAGAACTATCAGCGCAATGGAGAGGTCGTCAAAGGAAGTACCAGCATTGTCTATAGAGACATCAACCGTCTCACTGGGCAACGCCATGTGATTAAGGAGTTCTCGCCGGCTAGAGTCGACGCTGGTTTGCGTGAAATTTCTTCACTTCAGCAATTGGGTAGTGACCACTTCGTAATAACTCTGGTGGATCATCACTACTCTGCACATTCACCAAGGGCTTTGCGGGTTAGGAACGAGGCCTCCCTCTCCCAATCATCCGGTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

10.0

Weight (kDa)

9.39

Isoelectric Point (pI)

39.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020666)

Species Orthologous Gene IDs
rosa_laevigata RLG00000015697
rosa_multiflora Rmu_sc0007908.1_g000003 Rmu_sc0020315.1_g000005
rosa_roxburghii Rroxscaffold_2G00155290
rosa_samantha Rh2CG011300 Rh2DG012200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 120
AciI CCGC 1 cut(s) 226
AclWI GGATC 1 cut(s) 198
AcsI RAATTY 1 cut(s) 138
AcuI CTGAAG 1 cut(s) 134
AfaI GTAC 1 cut(s) 43
AloI GAACNNNNNNTCC 2 cut(s) 227, 259
Alw26I GTCTC 2 cut(s) 54, 77
AlwI GGATC 1 cut(s) 198
AoxI GGCC 1 cut(s) 240
ApoI RAATTY 1 cut(s) 138
AspLEI GCGC 1 cut(s) 18
AsuHPI GGTGA 1 cut(s) 204
BcoDI GTCTC 2 cut(s) 54, 77
BfaI CTAG 1 cut(s) 114
BfmI CTRYAG 1 cut(s) 55
BmrI ACTGGG 1 cut(s) 87
BmuI ACTGGG 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 215
BsaWI WCCGGW 1 cut(s) 260
BsaXI ACNNNNNCTCC 4 cut(s) 15, 45, 227, 257
Bse118I RCCGGY 1 cut(s) 109
Bse1I ACTGG 1 cut(s) 82
Bse3DI GCAATG 1 cut(s) 25
BseDI CCNNGG 1 cut(s) 215
BseGI GGATG 1 cut(s) 257
BseMI GCAATG 1 cut(s) 25
BseNI ACTGG 1 cut(s) 82
BsgI GTGCAG 1 cut(s) 189
BshFI GGCC 1 cut(s) 242
BsiSI CCGG 2 cut(s) 110, 261
BsmAI GTCTC 2 cut(s) 54, 77
BsmBI CGTCTC 1 cut(s) 77
BsnI GGCC 1 cut(s) 242
Bsp143I GATC 1 cut(s) 190
BspACI CCGC 1 cut(s) 226
BspANI GGCC 1 cut(s) 242
BspPI GGATC 1 cut(s) 198
BsrDI GCAATG 1 cut(s) 25
BsrFI RCCGGY 1 cut(s) 109
BsrI ACTGG 1 cut(s) 82
BssAI RCCGGY 1 cut(s) 109
BssECI CCNNGG 1 cut(s) 215
BssMI GATC 1 cut(s) 190
BssT1I CCWWGG 1 cut(s) 215
Bst4CI ACNGT 1 cut(s) 71
BstC8I GCNNGC 1 cut(s) 111
BstF5I GGATG 1 cut(s) 257
BstHHI GCGC 1 cut(s) 18
BstKTI GATC 1 cut(s) 193
BstMAI GTCTC 2 cut(s) 54, 77
BstMBI GATC 1 cut(s) 190
BstSFI CTRYAG 1 cut(s) 55
BsuRI GGCC 1 cut(s) 242
BtsCI GGATG 1 cut(s) 257
BtsIMutI CAGTG 1 cut(s) 75
Cac8I GCNNGC 1 cut(s) 111
CfoI GCGC 1 cut(s) 18
Cfr10I RCCGGY 1 cut(s) 109
CseI GACGC 1 cut(s) 131
Csp6I GTAC 1 cut(s) 42
CviAII CATG 1 cut(s) 89
CviJI RGCY 3 cut(s) 113, 221, 242
CviKI_1 RGCY 3 cut(s) 113, 221, 242
CviQI GTAC 1 cut(s) 42
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
Eco130I CCWWGG 1 cut(s) 215
Eco147I AGGCCT 1 cut(s) 242
Eco57I CTGAAG 1 cut(s) 134
EcoT14I CCWWGG 1 cut(s) 215
ErhI CCWWGG 1 cut(s) 215
Esp3I CGTCTC 1 cut(s) 77
FaeI CATG 1 cut(s) 92
FaiI YATR 2 cut(s) 57, 90
FatI CATG 1 cut(s) 88
FauI CCCGC 1 cut(s) 219
FblI GTMKAC 1 cut(s) 120
FokI GGATG 1 cut(s) 244
FspBI CTAG 1 cut(s) 114
GlaI GCGC 1 cut(s) 17
HaeIII GGCC 1 cut(s) 242
HapII CCGG 2 cut(s) 110, 261
HgaI GACGC 1 cut(s) 131
HhaI GCGC 1 cut(s) 18
Hin1II CATG 1 cut(s) 92
Hin6I GCGC 1 cut(s) 16
HinP1I GCGC 1 cut(s) 16
HincII GTYRAC 1 cut(s) 121
HindII GTYRAC 1 cut(s) 121
HinfI GANTC 1 cut(s) 117
HpaII CCGG 2 cut(s) 110, 261
HphI GGTGA 1 cut(s) 204
Hpy166II GTNNAC 1 cut(s) 121
Hpy8I GTNNAC 1 cut(s) 121
Hpy99I CGWCG 1 cut(s) 125
HpyCH4III ACNGT 1 cut(s) 71
HpyCH4V TGCA 1 cut(s) 206
Hsp92II CATG 1 cut(s) 92
HspAI GCGC 1 cut(s) 16
KroI GCCGGC 1 cut(s) 109
KroNI GCCGGC 1 cut(s) 111
Kzo9I GATC 1 cut(s) 190
LpnPI CCDG 5 cut(s) 58, 63, 111, 123, 170
MaeI CTAG 1 cut(s) 114
MaeIII GTNAC 1 cut(s) 164
MalI GATC 1 cut(s) 192
MboI GATC 1 cut(s) 190
MboII GAAGA 1 cut(s) 135
MfeI CAATTG 1 cut(s) 155
MluCI AATT 2 cut(s) 138, 155
MlyI GAGTC 1 cut(s) 126
MnlI CCTC 4 cut(s) 19, 232, 253, 257
MroNI GCCGGC 1 cut(s) 109
MseI TTAA 1 cut(s) 96
MspI CCGG 2 cut(s) 110, 261
MunI CAATTG 1 cut(s) 155
NaeI GCCGGC 1 cut(s) 111
NdeII GATC 1 cut(s) 190
NgoMIV GCCGGC 1 cut(s) 109
NlaIII CATG 1 cut(s) 92
NmuCI GTSAC 1 cut(s) 164
PceI AGGCCT 1 cut(s) 242
PdiI GCCGGC 1 cut(s) 111
PleI GAGTC 1 cut(s) 125
PpsI GAGTC 1 cut(s) 125
RsaI GTAC 1 cut(s) 43
RsaNI GTAC 1 cut(s) 42
SalI GTCGAC 1 cut(s) 119
SaqAI TTAA 1 cut(s) 96
Sau3AI GATC 1 cut(s) 190
SchI GAGTC 1 cut(s) 126
SetI ASST 1 cut(s) 30
SfcI CTRYAG 1 cut(s) 55
Sse9I AATT 2 cut(s) 138, 155
SseBI AGGCCT 1 cut(s) 242
SsiI CCGC 1 cut(s) 226
SspMI CTAG 1 cut(s) 114
StuI AGGCCT 1 cut(s) 242
StyI CCWWGG 1 cut(s) 215
TaaI ACNGT 1 cut(s) 71
TaqI TCGA 1 cut(s) 120
TasI AATT 2 cut(s) 138, 155
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TscAI CASTG 1 cut(s) 82
TseFI GTSAC 1 cut(s) 164
Tsp45I GTSAC 1 cut(s) 164
TspRI CASTG 1 cut(s) 82
XapI RAATTY 1 cut(s) 138
XmiI GTMKAC 1 cut(s) 120
XspI CTAG 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.