Rmu_sc0008099.1_g000001

Boron transporter

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008099.1
Physical Location & Seq
Forward (+)
1 .. 4292
4292 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008099.1_g000001.1.cds

Sequence Viewer

Length: 2014 bp
agtgtctgagacctccggcgaccctcccccggccggaaatatactctctctctcccttcttcatccgccgccgccggtcacatcccacattcttcattatcaaccaaaccaactctctgcattaaggatattagctccaaccttctatattttctttgcctctgcgcttccggtgatcgcctttggggagcaattgagtagagatacagatggaagcttgagcacagtggagacattagcttctacagcaatatgtggtatcatccaatcattattcggcggacagcctctgctggttttaggagttgctgaaccaaccgttattatgtacaattatatgtacactttcagcaaaaaaaggccggagttggggaccaagctatttctagcttggactggttgggtttgtgtctggacatcactgttgctgattcttcttgcaattttcaatgcatgtaacatcatatccagatttacgaggattgcaggagagctttttggcatgttgatttcagtgctcttcatccaagaggccatcaagggagtaatctctgaatttagtattccacaagctgagagtccagataaggaggagttccgatttgaatggctctacgccaatgggttgctcgcagttattttctgttttggtttgcttttgactgcccttaagagcagaaaagcaagatcatggtggtatggcacaggctggctgagaagctttaccgccgactatggggttccccttatggtcttaacatggacagcaatgtcttatgctttacccagtgaagttccacatgcagttcctaggcggctcgtctgtccatttccatgggacaaagaatcactgtaccactggacagtcataatggacatgggcaaggtcccaatggtttacatctttgctgcctttataccagccattatgatagcaggtctatactttttcgaccacagtgtagcttcacagctggcacaacagaaggagtttaatcttcaaaaaccatctgcataccattatgatttgttactgctgggaataatgacattgatttgtgggttgcttggacttccgccatcaaatggggtccttccacagtcccccatgcacactaagagtcttgctacactaaggaggcaggtgatccgaaagaagatggtgaagagtgccaaggattgcatgaaagaaaatgcaagcaactctgagatttatggaaggatggaggctgtgtttatagaaatggaaggcggctctcctccaaatcccaaggagttggcaaacttgaaggaggctgtgatgaaagctgatgatgggggagatttgaagggaaaatttgatcctgagaaacacattgatgctcatttgcctgttcgggtcaatgagcaaagagtgagcaacctcttgcagtcgcttcttgtgggagtctcaatattgggaatagccgcaatcaaaatgatacctacctcagttttgtggggatactttgcctatatggcaattgatagtctcccaggtagtcagttctttgagaggattttgctgctcttcatcagccctagtcgccgttacaaggtcttggaaggttctcatgcttcattcgtggagttagtaccatacaagtacattgttgggttcacgctcttccaagtggtttactttttgatgtgtttcggggtgacatggatacctatagccggaatattgttcccattgccattcttccttcttatcagcataaggcaacatgtgctacccaggttctttcaccctgcccatcttcaagaacttgattcttgtgagtgggaagaatgtcctggtgctccacaagaaaaaccacatgaagctggcggtgacgaggagggtacagaatcgttctttgatgctgagatattggatgagatgacaaccagcagaggcgagttgaagcttaggaccagcttcagtagtactgaagacaggtgcatcccgacgatgctccccgaatatgacaagacagtggattctgattag

Protein Analysis

670

Amino Acids

74.94

Weight (kDa)

5.82

Isoelectric Point (pI)

53.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010733)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1133
AasI GACNNNNNNGTC 1 cut(s) 770
Acc36I ACCTGC 2 cut(s) 927, 1133
AccB7I CCANNNNNTGG 1 cut(s) 1086
AclWI GGATC 2 cut(s) 1142, 1335
AcoI YGGCCR 1 cut(s) 31
AcsI RAATTY 2 cut(s) 555, 1335
AcuI CTGAAG 2 cut(s) 1928, 1975
AfaI GTAC 7 cut(s) 330, 342, 855, 1615, 1626, 1868, 1952
AfiI CCNNNNNNNGG 7 cut(s) 29, 33, 369, 736, 1086, 1574, 1698
AflII CTTAAG 1 cut(s) 669
AflIII ACRYGT 1 cut(s) 1748
AgsI TTSAA 7 cut(s) 449, 606, 1002, 1289, 1328, 1785, 1928
AjnI CCWGG 3 cut(s) 1514, 1758, 1817
Alw21I GWGCWC 3 cut(s) 225, 520, 1826
Alw26I GTCTC 4 cut(s) 3, 225, 1433, 1515
AlwI GGATC 2 cut(s) 1142, 1335
AlwNI CAGNNNCTG 1 cut(s) 290
AoxI GGCC 3 cut(s) 31, 360, 532
ApeKI GCWGC 2 cut(s) 909, 1544
ApoI RAATTY 2 cut(s) 555, 1335
AspA2I CCTAGG 1 cut(s) 810
AspLEI GCGC 1 cut(s) 167
AspS9I GGNCC 4 cut(s) 373, 887, 1091, 1936
AsuC2I CCSGG 1 cut(s) 30
AsuHPI GGTGA 6 cut(s) 185, 1157, 1175, 1691, 1761, 1866
AvaII GGWCC 4 cut(s) 373, 887, 1091, 1936
AvrII CCTAGG 1 cut(s) 810
BbsI GAAGAC 1 cut(s) 1963
Bbv12I GWGCWC 3 cut(s) 225, 520, 1826
BbvI GCAGC 2 cut(s) 896, 1531
BccI CCATC 8 cut(s) 204, 543, 1016, 1088, 1154, 1217, 1308, 1786
BceAI ACGGC 1 cut(s) 1552
BciT130I CCWGG 3 cut(s) 1516, 1760, 1819
BciVI GTATCC 2 cut(s) 1476, 1681
BcnI CCSGG 1 cut(s) 30
BcoDI GTCTC 4 cut(s) 3, 225, 1433, 1515
BfaI CTAG 3 cut(s) 387, 811, 1561
BfmI CTRYAG 2 cut(s) 244, 1693
BfrI CTTAAG 1 cut(s) 669
BfuAI ACCTGC 2 cut(s) 927, 1133
BfuI GTATCC 2 cut(s) 1476, 1681
BglI GCCNNNNNGGC 1 cut(s) 1497
BisI GCNGC 7 cut(s) 69, 72, 816, 910, 1253, 1447, 1545
BlnI CCTAGG 1 cut(s) 810
BlsI GCNGC 7 cut(s) 70, 73, 817, 911, 1254, 1448, 1546
BmcAI AGTACT 1 cut(s) 1952
Bme1390I CCNGG 4 cut(s) 30, 1516, 1760, 1819
Bme18I GGWCC 4 cut(s) 373, 887, 1091, 1936
BmgT120I GGNCC 4 cut(s) 373, 887, 1091, 1936
BmiI GGNNCC 4 cut(s) 374, 742, 889, 1092
BmrFI CCNGG 4 cut(s) 30, 1516, 1760, 1819
BmrI ACTGGG 1 cut(s) 781
BmsI GCATC 4 cut(s) 1349, 1874, 1966, 1975
BmuI ACTGGG 1 cut(s) 781
BpiI GAAGAC 1 cut(s) 1963
Bpu10I CCTNAGC 1 cut(s) 1932
BpuEI CTTGAG 1 cut(s) 239
BpuMI CCSGG 1 cut(s) 30
BsaI GGTCTC 1 cut(s) 3
BsaJI CCNNGG 7 cut(s) 28, 810, 834, 1174, 1270, 1514, 1758
BsaWI WCCGGW 1 cut(s) 170
BsaXI ACNNNNNCTCC 2 cut(s) 1218, 1248
Bsc4I CCNNNNNNNGG 7 cut(s) 29, 33, 369, 736, 1086, 1574, 1698
Bse118I RCCGGY 1 cut(s) 74
Bse1I ACTGG 3 cut(s) 401, 787, 864
Bse3DI GCAATG 2 cut(s) 775, 1713
BseBI CCWGG 3 cut(s) 1516, 1760, 1819
BseDI CCNNGG 7 cut(s) 28, 810, 834, 1174, 1270, 1514, 1758
BseGI GGATG 7 cut(s) 62, 81, 262, 523, 1228, 1904, 1966
BseLI CCNNNNNNNGG 7 cut(s) 29, 33, 369, 736, 1086, 1574, 1698
BseMI GCAATG 2 cut(s) 775, 1713
BseMII CTCAG 6 cut(s) 565, 705, 1198, 1336, 1483, 1879
BseNI ACTGG 3 cut(s) 401, 787, 864
BseRI GAGGAG 3 cut(s) 606, 1249, 1875
BseX3I CGGCCG 1 cut(s) 31
BseXI GCAGC 2 cut(s) 896, 1531
BseYI CCCAGC 1 cut(s) 1037
Bsh1285I CGRYCG 1 cut(s) 34
BshFI GGCC 3 cut(s) 33, 362, 534
BsiEI CGRYCG 1 cut(s) 34
BsiHKAI GWGCWC 3 cut(s) 225, 520, 1826
BsiSI CCGG 7 cut(s) 16, 30, 34, 75, 171, 363, 1699
BslFI GGGAC 4 cut(s) 386, 852, 873, 1088
BslI CCNNNNNNNGG 7 cut(s) 29, 33, 369, 736, 1086, 1574, 1698
BsmAI GTCTC 4 cut(s) 3, 225, 1433, 1515
BsmFI GGGAC 4 cut(s) 386, 852, 873, 1088
BsnI GGCC 3 cut(s) 33, 362, 534
Bso31I GGTCTC 1 cut(s) 3
Bsp1286I GDGCHC 3 cut(s) 225, 520, 1826
Bsp1407I TGTACA 2 cut(s) 328, 340
Bsp143I GATC 4 cut(s) 175, 687, 1147, 1340
Bsp19I CCATGG 1 cut(s) 834
BspANI GGCC 3 cut(s) 33, 362, 534
BspCNI CTCAG 6 cut(s) 566, 706, 1199, 1337, 1482, 1880
BspLI GGNNCC 4 cut(s) 374, 742, 889, 1092
BspMI ACCTGC 2 cut(s) 927, 1133
BspPI GGATC 2 cut(s) 1142, 1335
BspQI GCTCTTC 3 cut(s) 525, 1554, 1650
BspTI CTTAAG 1 cut(s) 669
BspTNI GGTCTC 1 cut(s) 3
BsrDI GCAATG 2 cut(s) 775, 1713
BsrFI RCCGGY 1 cut(s) 74
BsrGI TGTACA 2 cut(s) 328, 340
BsrI ACTGG 3 cut(s) 401, 787, 864
BssAI RCCGGY 1 cut(s) 74
BssECI CCNNGG 7 cut(s) 28, 810, 834, 1174, 1270, 1514, 1758
BssMI GATC 4 cut(s) 175, 687, 1147, 1340
BssT1I CCWWGG 4 cut(s) 810, 834, 1174, 1270
Bst2UI CCWGG 3 cut(s) 1516, 1760, 1819
Bst4CI ACNGT 8 cut(s) 227, 320, 424, 853, 866, 960, 1102, 2000
Bst6I CTCTTC 4 cut(s) 525, 1161, 1554, 1650
BstAFI CTTAAG 1 cut(s) 669
BstAPI GCANNNNNTGC 1 cut(s) 1751
BstAUI TGTACA 2 cut(s) 328, 340
BstC8I GCNNGC 5 cut(s) 631, 711, 976, 1199, 1850
BstDSI CCRYGG 1 cut(s) 834
BstF5I GGATG 7 cut(s) 62, 81, 262, 523, 1228, 1904, 1966
BstHHI GCGC 1 cut(s) 167
BstKTI GATC 4 cut(s) 178, 690, 1150, 1343
BstMAI GTCTC 4 cut(s) 3, 225, 1433, 1515
BstMBI GATC 4 cut(s) 175, 687, 1147, 1340
BstMCI CGRYCG 1 cut(s) 34
BstMWI GCNNNNNNNGC 4 cut(s) 246, 1497, 1564, 1751
BstNI CCWGG 3 cut(s) 1516, 1760, 1819
BstNSI RCATGY 4 cut(s) 457, 506, 804, 1752
BstSCI CCNGG 4 cut(s) 28, 1514, 1758, 1817
BstSFI CTRYAG 2 cut(s) 244, 1693
BstV1I GCAGC 2 cut(s) 896, 1531
BstV2I GAAGAC 1 cut(s) 1963
BstXI CCANNNNNNTGG 2 cut(s) 835, 1277
BstZI CGGCCG 1 cut(s) 31
BsuI GTATCC 2 cut(s) 1476, 1681
BsuRI GGCC 3 cut(s) 33, 362, 534
BtgI CCRYGG 1 cut(s) 834
BtsCI GGATG 7 cut(s) 62, 81, 262, 523, 1228, 1904, 1966
BtsIMutI CAGTG 8 cut(s) 232, 420, 520, 794, 849, 857, 965, 2005
BveI ACCTGC 2 cut(s) 927, 1133
Cac8I GCNNGC 5 cut(s) 631, 711, 976, 1199, 1850
CaiI CAGNNNCTG 1 cut(s) 290
CfoI GCGC 1 cut(s) 167
Cfr10I RCCGGY 1 cut(s) 74
Cfr13I GGNCC 4 cut(s) 373, 887, 1091, 1936
Csp6I GTAC 7 cut(s) 329, 341, 854, 1614, 1625, 1867, 1951
CviQI GTAC 7 cut(s) 329, 341, 854, 1614, 1625, 1867, 1951
DpnI GATC 4 cut(s) 177, 689, 1149, 1342
DpnII GATC 4 cut(s) 175, 687, 1147, 1340
DrdI GACNNNNNNGTC 1 cut(s) 770
DseDI GACNNNNNNGTC 1 cut(s) 770
EaeI YGGCCR 1 cut(s) 31
EagI CGGCCG 1 cut(s) 31
Eam1104I CTCTTC 4 cut(s) 525, 1161, 1554, 1650
EarI CTCTTC 4 cut(s) 525, 1161, 1554, 1650
EciI GGCGGA 3 cut(s) 55, 295, 1066
EclXI CGGCCG 1 cut(s) 31
Eco130I CCWWGG 4 cut(s) 810, 834, 1174, 1270
Eco31I GGTCTC 1 cut(s) 3
Eco47I GGWCC 4 cut(s) 373, 887, 1091, 1936
Eco52I CGGCCG 1 cut(s) 31
Eco57I CTGAAG 2 cut(s) 1928, 1975
EcoO109I RGGNCCY 2 cut(s) 887, 1091
EcoRII CCWGG 3 cut(s) 1514, 1758, 1817
EcoT14I CCWWGG 4 cut(s) 810, 834, 1174, 1270
EcoT22I ATGCAT 1 cut(s) 455
ErhI CCWWGG 4 cut(s) 810, 834, 1174, 1270
FaqI GGGAC 4 cut(s) 386, 852, 873, 1088
Fnu4HI GCNGC 7 cut(s) 69, 72, 816, 910, 1253, 1447, 1545
FokI GGATG 7 cut(s) 49, 68, 249, 510, 1235, 1911, 1953
Fsp4HI GCNGC 7 cut(s) 69, 72, 816, 910, 1253, 1447, 1545
FspBI CTAG 3 cut(s) 387, 811, 1561
GlaI GCGC 1 cut(s) 166
GluI GCNGC 7 cut(s) 69, 72, 816, 910, 1253, 1447, 1545
GsaI CCCAGC 1 cut(s) 1041
HaeIII GGCC 3 cut(s) 33, 362, 534
HapII CCGG 7 cut(s) 16, 30, 34, 75, 171, 363, 1699
HhaI GCGC 1 cut(s) 167
Hin6I GCGC 1 cut(s) 165
HinP1I GCGC 1 cut(s) 165
HindIII AAGCTT 3 cut(s) 215, 719, 1929
HinfI GANTC 8 cut(s) 431, 578, 846, 1121, 1426, 1794, 1872, 2004
HpaII CCGG 7 cut(s) 16, 30, 34, 75, 171, 363, 1699
HphI GGTGA 6 cut(s) 185, 1157, 1175, 1691, 1761, 1866
Hpy166II GTNNAC 4 cut(s) 343, 899, 1639, 1658
Hpy188I TCNGA 6 cut(s) 8, 554, 600, 1152, 1208, 2009
Hpy188III TCNNGA 6 cut(s) 413, 469, 582, 1344, 1785, 1970
Hpy8I GTNNAC 4 cut(s) 343, 899, 1639, 1658
Hpy99I CGWCG 1 cut(s) 1976
HpyCH4III ACNGT 8 cut(s) 227, 320, 424, 853, 866, 960, 1102, 2000
HpyF10VI GCNNNNNNNGC 4 cut(s) 246, 1497, 1564, 1751
HspAI GCGC 1 cut(s) 165
Kzo9I GATC 4 cut(s) 175, 687, 1147, 1340
LguI GCTCTTC 3 cut(s) 525, 1554, 1650
LmnI GCTCC 4 cut(s) 140, 188, 1829, 1984
Lsp1109I GCAGC 2 cut(s) 896, 1531
LweI GCATC 4 cut(s) 1349, 1874, 1966, 1975
MaeI CTAG 3 cut(s) 387, 811, 1561
MaeIII GTNAC 6 cut(s) 77, 456, 1030, 1569, 1679, 1854
MalI GATC 4 cut(s) 177, 689, 1149, 1342
MboI GATC 4 cut(s) 175, 687, 1147, 1340
MfeI CAATTG 2 cut(s) 192, 1501
MhlI GDGCHC 3 cut(s) 225, 520, 1826
MluCI AATT 6 cut(s) 192, 332, 442, 555, 1335, 1501
MlyI GAGTC 3 cut(s) 587, 1130, 1435
MmeI TCCRAC 1 cut(s) 162
Mph1103I ATGCAT 1 cut(s) 455
MseI TTAA 4 cut(s) 123, 670, 756, 994
MslI CAYNNNNRTG 2 cut(s) 833, 1357
MspA1I CMGCKG 1 cut(s) 974
MspCI CTTAAG 1 cut(s) 669
MspI CCGG 7 cut(s) 16, 30, 34, 75, 171, 363, 1699
MspR9I CCNGG 4 cut(s) 30, 1516, 1760, 1819
MunI CAATTG 2 cut(s) 192, 1501
MvaI CCWGG 3 cut(s) 1516, 1760, 1819
MwoI GCNNNNNNNGC 4 cut(s) 246, 1497, 1564, 1751
NciI CCSGG 1 cut(s) 30
NcoI CCATGG 1 cut(s) 834
NdeII GATC 4 cut(s) 175, 687, 1147, 1340
NlaIV GGNNCC 4 cut(s) 374, 742, 889, 1092
NmuCI GTSAC 3 cut(s) 77, 1679, 1854
NsiI ATGCAT 1 cut(s) 455
NspI RCATGY 4 cut(s) 457, 506, 804, 1752
PaqCI CACCTGC 1 cut(s) 1133
PciI ACATGT 1 cut(s) 1748
PciSI GCTCTTC 3 cut(s) 525, 1554, 1650
PfeI GAWTC 5 cut(s) 431, 846, 1794, 1872, 2004
PflMI CCANNNNNTGG 1 cut(s) 1086
PkrI GCNGC 7 cut(s) 70, 73, 817, 911, 1254, 1448, 1546
PleI GAGTC 3 cut(s) 586, 1129, 1434
PpsI GAGTC 3 cut(s) 586, 1129, 1434
PpuMI RGGWCCY 2 cut(s) 887, 1091
PscI ACATGT 1 cut(s) 1748
Psp5II RGGWCCY 2 cut(s) 887, 1091
Psp6I CCWGG 3 cut(s) 1514, 1758, 1817
PspFI CCCAGC 1 cut(s) 1037
PspGI CCWGG 3 cut(s) 1514, 1758, 1817
PspN4I GGNNCC 4 cut(s) 374, 742, 889, 1092
PspPI GGNCC 4 cut(s) 373, 887, 1091, 1936
PspPPI RGGWCCY 2 cut(s) 887, 1091
PstNI CAGNNNCTG 1 cut(s) 290
PvuII CAGCTG 1 cut(s) 974
RsaI GTAC 7 cut(s) 330, 342, 855, 1615, 1626, 1868, 1952
RsaNI GTAC 7 cut(s) 329, 341, 854, 1614, 1625, 1867, 1951
RseI CAYNNNNRTG 2 cut(s) 833, 1357
SapI GCTCTTC 3 cut(s) 525, 1554, 1650
SaqAI TTAA 4 cut(s) 123, 670, 756, 994
SatI GCNGC 7 cut(s) 69, 72, 816, 910, 1253, 1447, 1545
Sau3AI GATC 4 cut(s) 175, 687, 1147, 1340
Sau96I GGNCC 4 cut(s) 373, 887, 1091, 1936
ScaI AGTACT 1 cut(s) 1952
SchI GAGTC 3 cut(s) 587, 1130, 1435
ScrFI CCNGG 4 cut(s) 30, 1516, 1760, 1819
SduI GDGCHC 3 cut(s) 225, 520, 1826
SfaNI GCATC 4 cut(s) 1349, 1874, 1966, 1975
SfcI CTRYAG 2 cut(s) 244, 1693
SinI GGWCC 4 cut(s) 373, 887, 1091, 1936
SmiMI CAYNNNNRTG 2 cut(s) 833, 1357
SmlI CTYRAG 2 cut(s) 218, 669
SmoI CTYRAG 2 cut(s) 218, 669
Sse9I AATT 6 cut(s) 192, 332, 442, 555, 1335, 1501
SspI AATATT 2 cut(s) 1435, 1705
SspMI CTAG 3 cut(s) 387, 811, 1561
StyD4I CCNGG 4 cut(s) 28, 1514, 1758, 1817
StyI CCWWGG 4 cut(s) 810, 834, 1174, 1270
TaaI ACNGT 8 cut(s) 227, 320, 424, 853, 866, 960, 1102, 2000
TaqI TCGA 1 cut(s) 952
TasI AATT 6 cut(s) 192, 332, 442, 555, 1335, 1501
TatI WGTACW 4 cut(s) 328, 340, 1624, 1950
TauI GCSGC 5 cut(s) 71, 74, 818, 1255, 1449
TfiI GAWTC 5 cut(s) 431, 846, 1794, 1872, 2004
Tru1I TTAA 4 cut(s) 123, 670, 756, 994
Tru9I TTAA 4 cut(s) 123, 670, 756, 994
TscAI CASTG 8 cut(s) 232, 427, 520, 794, 856, 864, 965, 2005
TseFI GTSAC 3 cut(s) 77, 1679, 1854
TseI GCWGC 2 cut(s) 909, 1544
Tsp45I GTSAC 3 cut(s) 77, 1679, 1854
TspDTI ATGAA 8 cut(s) 51, 84, 512, 1200, 1317, 1541, 1588, 1858
TspRI CASTG 8 cut(s) 232, 427, 520, 794, 856, 864, 965, 2005
Van91I CCANNNNNTGG 1 cut(s) 1086
Vha464I CTTAAG 1 cut(s) 669
VpaK11BI GGWCC 4 cut(s) 373, 887, 1091, 1936
XapI RAATTY 2 cut(s) 555, 1335
XceI RCATGY 4 cut(s) 457, 506, 804, 1752
XmaJI CCTAGG 1 cut(s) 810
XspI CTAG 3 cut(s) 387, 811, 1561
ZrmI AGTACT 1 cut(s) 1952
Zsp2I ATGCAT 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.